EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_WSBEiJ_G0032968 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39
Alias: 2610307C23Rik|BAT1|DDXL|Ddx39a|URH49
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
Gene Type: protein_coding
Species: Mus_musculus_wsbeij
Status: putative
Strand: Plus strand
Length: 12990 bases
Position: chr8:84030037-84043026
Accession: 1915528
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_WSBEiJ_P0088229	ResIII	PF04851.15	3e-05	1	1
MGP_WSBEiJ_P0088232	ResIII	PF04851.15	3e-05	1	1
MGP_WSBEiJ_P0088233	ResIII	PF04851.15	3e-05	1	1
MGP_WSBEiJ_P0088229	DEAD	PF00270.29	4.1e-38	1	1
MGP_WSBEiJ_P0088232	DEAD	PF00270.29	4.1e-38	1	1
MGP_WSBEiJ_P0088233	DEAD	PF00270.29	4.1e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_WSBEiJ_T0088229	-	1656	XM_006531332	MGP_WSBEiJ_P0088229	427 (aa)	XP_006531395	Q8VDW0
MGP_WSBEiJ_T0088234	-	754	-	-	- (aa)	-	-
MGP_WSBEiJ_T0088232	-	3858	-	MGP_WSBEiJ_P0088232	427 (aa)	-	-
MGP_WSBEiJ_T0088233	-	1794	-	MGP_WSBEiJ_P0088233	427 (aa)	-	-
MGP_WSBEiJ_T0088230	-	1927	-	-	- (aa)	-	-
MGP_WSBEiJ_T0088231	-	1551	-	MGP_WSBEiJ_P0088231	208 (aa)	-	-

Gene Model

Click here to download MGP_WSBEiJ_G0032968's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_WSBEiJ_G0032968's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_WSBEiJ_G0032968	Ddx39	90	30.392	MGP_WSBEiJ_G0034686	Ddx3x	56	31.565
MGP_WSBEiJ_G0032968	Ddx39	85	31.183	MGP_WSBEiJ_G0033655	Ddx25	81	31.328
MGP_WSBEiJ_G0032968	Ddx39	86	34.688	MGP_WSBEiJ_G0021982	Eif4a2	89	34.688
MGP_WSBEiJ_G0032968	Ddx39	84	39.655	MGP_WSBEiJ_G0017908	Eif4a1	89	36.612
MGP_WSBEiJ_G0032968	Ddx39	74	34.969	MGP_WSBEiJ_G0017388	Ddx56	61	32.051
MGP_WSBEiJ_G0032968	Ddx39	86	37.197	MGP_WSBEiJ_G0018833	Eif4a3	89	37.197
MGP_WSBEiJ_G0032968	Ddx39	89	32.620	MGP_WSBEiJ_G0030576	Ddx47	90	32.095
MGP_WSBEiJ_G0032968	Ddx39	100	90.888	MGP_WSBEiJ_G0022920	Ddx39b	100	90.888
MGP_WSBEiJ_G0032968	Ddx39	90	34.074	MGP_WSBEiJ_G0026956	Ddx20	50	34.140
MGP_WSBEiJ_G0032968	Ddx39	90	30.392	MGP_WSBEiJ_G0016327	D1Pas1	57	31.565
MGP_WSBEiJ_G0032968	Ddx39	87	33.156	MGP_WSBEiJ_G0032828	Ddx49	97	33.333
MGP_WSBEiJ_G0032968	Ddx39	90	32.061	MGP_WSBEiJ_G0033260	Ddx19b	81	32.061