EuRBPDB

Description

Ensembl ID: MGP_WSBEiJ_G0034225 (Gene tree)
Gene ID: -
Gene Symbol: Syncrip
Alias: 2610109K23Rik|4632417O19Rik|GRY-RBP|Hnrpq|Nsap1|Nsap1l|RRM RNA binding protein GRY-RBP|hnRNP Q|pp68
Full Name: synaptotagmin binding%2C cytoplasmic RNA interacting protein
Gene Type: protein_coding
Species: Mus_musculus_wsbeij
Status: putative
Strand: Minus strand
Length: 35891 bases
Position: chr9:88400597-88436487
Accession: 1891690
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_WSBEiJ_P0092134	RRM_5	PF13893.6	2.4e-06	1	1
MGP_WSBEiJ_P0092132	RRM_5	PF13893.6	2.9e-06	1	1
MGP_WSBEiJ_P0092138	RRM_5	PF13893.6	3.2e-06	1	1
MGP_WSBEiJ_P0092135	RRM_5	PF13893.6	4.7e-06	1	1
MGP_WSBEiJ_P0092131	RRM_5	PF13893.6	4.7e-06	1	1
MGP_WSBEiJ_P0092137	RRM_5	PF13893.6	6.1e-06	1	1
MGP_WSBEiJ_P0092132	RRM_1	PF00076.22	1.7e-44	1	3
MGP_WSBEiJ_P0092132	RRM_1	PF00076.22	1.7e-44	2	3
MGP_WSBEiJ_P0092132	RRM_1	PF00076.22	1.7e-44	3	3
MGP_WSBEiJ_P0092135	RRM_1	PF00076.22	3e-44	1	3
MGP_WSBEiJ_P0092135	RRM_1	PF00076.22	3e-44	2	3
MGP_WSBEiJ_P0092135	RRM_1	PF00076.22	3e-44	3	3
MGP_WSBEiJ_P0092131	RRM_1	PF00076.22	3e-44	1	3
MGP_WSBEiJ_P0092131	RRM_1	PF00076.22	3e-44	2	3
MGP_WSBEiJ_P0092131	RRM_1	PF00076.22	3e-44	3	3
MGP_WSBEiJ_P0092137	RRM_1	PF00076.22	4.6e-44	1	3
MGP_WSBEiJ_P0092137	RRM_1	PF00076.22	4.6e-44	2	3
MGP_WSBEiJ_P0092137	RRM_1	PF00076.22	4.6e-44	3	3
MGP_WSBEiJ_P0092134	RRM_1	PF00076.22	8.3e-43	1	3
MGP_WSBEiJ_P0092134	RRM_1	PF00076.22	8.3e-43	2	3
MGP_WSBEiJ_P0092134	RRM_1	PF00076.22	8.3e-43	3	3
MGP_WSBEiJ_P0092138	RRM_1	PF00076.22	1.3e-42	1	3
MGP_WSBEiJ_P0092138	RRM_1	PF00076.22	1.3e-42	2	3
MGP_WSBEiJ_P0092138	RRM_1	PF00076.22	1.3e-42	3	3
MGP_WSBEiJ_P0092133	RRM_1	PF00076.22	1.4e-31	1	2
MGP_WSBEiJ_P0092133	RRM_1	PF00076.22	1.4e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_WSBEiJ_T0092142	-	426	-	MGP_WSBEiJ_P0092142	94 (aa)	-	-
MGP_WSBEiJ_T0092141	-	2387	-	-	- (aa)	-	-
MGP_WSBEiJ_T0092140	-	766	-	MGP_WSBEiJ_P0092140	196 (aa)	-	-
MGP_WSBEiJ_T0092136	-	1925	-	MGP_WSBEiJ_P0092136	67 (aa)	-	-
MGP_WSBEiJ_T0092137	-	2921	-	MGP_WSBEiJ_P0092137	623 (aa)	-	-
MGP_WSBEiJ_T0092134	-	3286	-	MGP_WSBEiJ_P0092134	527 (aa)	-	-
MGP_WSBEiJ_T0092135	-	3404	-	MGP_WSBEiJ_P0092135	561 (aa)	-	-
MGP_WSBEiJ_T0092132	-	6256	-	MGP_WSBEiJ_P0092132	464 (aa)	-	-
MGP_WSBEiJ_T0092133	-	3175	-	MGP_WSBEiJ_P0092133	448 (aa)	-	-
MGP_WSBEiJ_T0092131	-	9422	XM_006511293	MGP_WSBEiJ_P0092131	562 (aa)	XP_006511356	Q7TMK9
MGP_WSBEiJ_T0092138	-	1767	-	MGP_WSBEiJ_P0092138	588 (aa)	-	-
MGP_WSBEiJ_T0092139	-	549	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_WSBEiJ_G0034225	Syncrip	64	54.333	MGP_WSBEiJ_G0026571	Rbm46	63	55.000
MGP_WSBEiJ_G0034225	Syncrip	97	80.440	MGP_WSBEiJ_G0028172	Hnrnpr	99	81.716
MGP_WSBEiJ_G0034225	Syncrip	70	52.308	MGP_WSBEiJ_G0024306	A1cf	51	53.398
MGP_WSBEiJ_G0034225	Syncrip	98	46.187	MGP_WSBEiJ_G0028775	Rbm47	88	58.451
MGP_WSBEiJ_G0034225	Syncrip	57	32.143	MGP_WSBEiJ_G0030144	Tia1	94	31.034