EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_WSBEiJ_G0034347 (Gene tree)
Gene ID: -
Gene Symbol: Pcbp4
Alias: 1200003L19Rik|AlphaCP-4
Full Name: poly(rC) binding protein 4
Gene Type: protein_coding
Species: Mus_musculus_wsbeij
Status: putative
Strand: Plus strand
Length: 10531 bases
Position: chr9:107095849-107106379
Accession: 1890471
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_WSBEiJ_P0092720	KH_1	PF00013.29	3.3e-50	1	3
MGP_WSBEiJ_P0092720	KH_1	PF00013.29	3.3e-50	2	3
MGP_WSBEiJ_P0092720	KH_1	PF00013.29	3.3e-50	3	3
MGP_WSBEiJ_P0092722	KH_1	PF00013.29	2.7e-32	1	2
MGP_WSBEiJ_P0092722	KH_1	PF00013.29	2.7e-32	2	2
MGP_WSBEiJ_P0092729	KH_1	PF00013.29	1.5e-21	1	1
MGP_WSBEiJ_P0092717	KH_1	PF00013.29	1.3e-18	1	1
MGP_WSBEiJ_P0092724	KH_1	PF00013.29	2.3e-15	1	1
MGP_WSBEiJ_P0092726	KH_1	PF00013.29	1.2e-13	1	1
MGP_WSBEiJ_P0092731	KH_1	PF00013.29	5.2e-09	1	1
MGP_WSBEiJ_P0092722	KH_2	PF07650.17	8.2e-12	1	1
MGP_WSBEiJ_P0092717	KH_2	PF07650.17	2.3e-06	1	1
MGP_WSBEiJ_P0092724	KH_2	PF07650.17	0.00014	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_WSBEiJ_T0092718	-	387	-	-	- (aa)	-	-
MGP_WSBEiJ_T0092732	-	450	-	-	- (aa)	-	-
MGP_WSBEiJ_T0092731	-	924	-	MGP_WSBEiJ_P0092731	215 (aa)	-	-
MGP_WSBEiJ_T0092719	-	610	-	-	- (aa)	-	-
MGP_WSBEiJ_T0092730	-	314	-	-	- (aa)	-	-
MGP_WSBEiJ_T0092727	-	846	-	MGP_WSBEiJ_P0092727	150 (aa)	-	-
MGP_WSBEiJ_T0092726	-	232	-	MGP_WSBEiJ_P0092726	77 (aa)	-	-
MGP_WSBEiJ_T0092725	-	253	-	-	- (aa)	-	-
MGP_WSBEiJ_T0092724	-	752	-	MGP_WSBEiJ_P0092724	113 (aa)	-	-
MGP_WSBEiJ_T0092723	-	477	-	-	- (aa)	-	-
MGP_WSBEiJ_T0092722	-	893	-	MGP_WSBEiJ_P0092722	197 (aa)	-	-
MGP_WSBEiJ_T0092721	-	378	-	-	- (aa)	-	-
MGP_WSBEiJ_T0092720	-	1987	-	MGP_WSBEiJ_P0092720	403 (aa)	-	-
MGP_WSBEiJ_T0092717	-	651	XM_006511779	MGP_WSBEiJ_P0092717	119 (aa)	XP_006511842	A0A087WP16
MGP_WSBEiJ_T0092729	-	765	-	MGP_WSBEiJ_P0092729	168 (aa)	-	-
MGP_WSBEiJ_T0092728	-	289	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_WSBEiJ_G0034347's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_WSBEiJ_G0034347's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_WSBEiJ_G0034347	Pcbp4	86	33.728	MGP_WSBEiJ_G0019958	Hnrnpk	78	32.414
MGP_WSBEiJ_G0034347	Pcbp4	76	32.323	MGP_WSBEiJ_G0023220	Khsrp	54	34.091
MGP_WSBEiJ_G0034347	Pcbp4	97	67.826	MGP_WSBEiJ_G0030147	Pcbp1	98	53.541
MGP_WSBEiJ_G0034347	Pcbp4	51	37.363	MGP_WSBEiJ_G0019063	Nova1	52	37.363
MGP_WSBEiJ_G0034347	Pcbp4	84	32.039	MGP_WSBEiJ_G0018351	Igf2bp1	59	30.597
MGP_WSBEiJ_G0034347	Pcbp4	83	36.000	MGP_WSBEiJ_G0024851	Fubp3	70	36.000
MGP_WSBEiJ_G0034347	Pcbp4	76	41.538	MGP_WSBEiJ_G0030895	Nova2	54	41.538
MGP_WSBEiJ_G0034347	Pcbp4	85	31.731	MGP_WSBEiJ_G0021970	Igf2bp2	62	31.111
MGP_WSBEiJ_G0034347	Pcbp4	98	66.321	MGP_WSBEiJ_G0021724	Pcbp2	97	59.877
MGP_WSBEiJ_G0034347	Pcbp4	93	70.652	MGP_WSBEiJ_G0016784	Pcbp3	85	69.811
MGP_WSBEiJ_G0034347	Pcbp4	76	33.684	MGP_WSBEiJ_G0027222	Fubp1	72	34.524