EuRBPDB

Description

Ensembl ID: MGP_WSBEiJ_G0034792 (Gene tree)
Gene ID: -
Gene Symbol: Smarca1
Alias: 5730494M04Rik|Snf2l
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Mus_musculus_wsbeij
Status: putative
Strand: Minus strand
Length: 78477 bases
Position: chrX:42482442-42560918
Accession: 1935127
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_WSBEiJ_P0094560	ResIII	PF04851.15	4.3e-12	1	1
MGP_WSBEiJ_P0094559	ResIII	PF04851.15	1.1e-11	1	1
MGP_WSBEiJ_P0094557	ResIII	PF04851.15	1.8e-11	1	1
MGP_WSBEiJ_P0094556	ResIII	PF04851.15	1.8e-11	1	1
MGP_WSBEiJ_P0094558	ResIII	PF04851.15	1.8e-11	1	1
MGP_WSBEiJ_P0094556	DEAD	PF00270.29	1.2e-06	1	1
MGP_WSBEiJ_P0094558	DEAD	PF00270.29	1.2e-06	1	1
MGP_WSBEiJ_P0094557	DEAD	PF00270.29	1.3e-06	1	1
MGP_WSBEiJ_P0094560	DEAD	PF00270.29	2.3e-06	1	1
MGP_WSBEiJ_P0094559	DEAD	PF00270.29	3.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_WSBEiJ_T0094558	-	4798	-	MGP_WSBEiJ_P0094558	1046 (aa)	-	-
MGP_WSBEiJ_T0094559	-	2304	-	MGP_WSBEiJ_P0094559	768 (aa)	-	-
MGP_WSBEiJ_T0094562	-	409	-	-	- (aa)	-	-
MGP_WSBEiJ_T0094561	-	360	-	MGP_WSBEiJ_P0094561	117 (aa)	-	-
MGP_WSBEiJ_T0094560	-	1965	-	MGP_WSBEiJ_P0094560	381 (aa)	-	-
MGP_WSBEiJ_T0094556	-	4024	XM_006541563	MGP_WSBEiJ_P0094556	1046 (aa)	XP_006541626	Q6PGB8
MGP_WSBEiJ_T0094557	-	3991	-	MGP_WSBEiJ_P0094557	1062 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_WSBEiJ_G0034792	Smarca1	61	32.031	MGP_WSBEiJ_G0027827	Rad54l	66	32.866
MGP_WSBEiJ_G0034792	Smarca1	72	45.247	MGP_WSBEiJ_G0024363	Hells	65	47.410
MGP_WSBEiJ_G0034792	Smarca1	75	42.930	MGP_WSBEiJ_G0026878	Chd1l	62	43.826
MGP_WSBEiJ_G0034792	Smarca1	71	30.490	MGP_WSBEiJ_G0019995	Ercc6l2	82	30.353
MGP_WSBEiJ_G0034792	Smarca1	90	82.670	MGP_WSBEiJ_G0032948	Smarca5	93	79.218
MGP_WSBEiJ_G0034792	Smarca1	68	31.488	MGP_WSBEiJ_G0027286	Rad54b	66	31.229