EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_WSBEiJ_G0035146 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc5
Alias: C820015E17
Full Name: poly(A) binding protein%2C cytoplasmic 5
Gene Type: protein_coding
Species: Mus_musculus_wsbeij
Status: putative
Strand: Plus strand
Length: 4066 bases
Position: chrX:114941771-114945836
Accession: 2136401
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_WSBEiJ_P0095831	RRM_5	PF13893.6	7.1e-12	1	2
MGP_WSBEiJ_P0095831	RRM_5	PF13893.6	7.1e-12	2	2
MGP_WSBEiJ_P0095832	RRM_5	PF13893.6	7.1e-12	1	2
MGP_WSBEiJ_P0095832	RRM_5	PF13893.6	7.1e-12	2	2
MGP_WSBEiJ_P0095831	RRM_1	PF00076.22	1.1e-77	1	4
MGP_WSBEiJ_P0095831	RRM_1	PF00076.22	1.1e-77	2	4
MGP_WSBEiJ_P0095831	RRM_1	PF00076.22	1.1e-77	3	4
MGP_WSBEiJ_P0095831	RRM_1	PF00076.22	1.1e-77	4	4
MGP_WSBEiJ_P0095832	RRM_1	PF00076.22	1.1e-77	1	4
MGP_WSBEiJ_P0095832	RRM_1	PF00076.22	1.1e-77	2	4
MGP_WSBEiJ_P0095832	RRM_1	PF00076.22	1.1e-77	3	4
MGP_WSBEiJ_P0095832	RRM_1	PF00076.22	1.1e-77	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_WSBEiJ_T0095832	-	2243	-	MGP_WSBEiJ_P0095832	381 (aa)	-	-
MGP_WSBEiJ_T0095831	-	2434	-	MGP_WSBEiJ_P0095831	381 (aa)	-	Q8C7D3

Gene Model

Click here to download MGP_WSBEiJ_G0035146's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_WSBEiJ_G0035146's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_WSBEiJ_G0035146	Pabpc5	96	61.111	MGP_WSBEiJ_G0023640	Pabpc2	62	60.955
MGP_WSBEiJ_G0035146	Pabpc5	96	56.944	MGP_WSBEiJ_G0026082	Pabpc1l	64	57.022
MGP_WSBEiJ_G0035146	Pabpc5	94	37.037	MGP_WSBEiJ_G0027657	Elavl2	89	37.037
MGP_WSBEiJ_G0035146	Pabpc5	96	63.636	MGP_WSBEiJ_G0021110	Pabpc1	87	63.782
MGP_WSBEiJ_G0035146	Pabpc5	70	35.955	MGP_WSBEiJ_G0016950	Celf5	56	35.955
MGP_WSBEiJ_G0035146	Pabpc5	95	58.445	MGP_WSBEiJ_G0022441	Pabpc6	59	58.470
MGP_WSBEiJ_G0035146	Pabpc5	95	63.636	MGP_WSBEiJ_G0017782	-	85	63.510
MGP_WSBEiJ_G0035146	Pabpc5	88	68.794	MGP_WSBEiJ_G0027947	-	100	68.794
MGP_WSBEiJ_G0035146	Pabpc5	93	33.333	MGP_WSBEiJ_G0030144	Tia1	84	34.247
MGP_WSBEiJ_G0035146	Pabpc5	63	34.483	MGP_WSBEiJ_G0034019	Celf6	51	34.483
MGP_WSBEiJ_G0035146	Pabpc5	96	57.967	MGP_WSBEiJ_G0026432	Pabpc4l	97	57.865