EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00000040 (Gene tree)
Gene ID: -
Gene Symbol: aco-1
Alias: gei-22
Full Name: Probable cytoplasmic aconitate hydratase
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Plus strand
Length: 3695 bases
Position: chrX:11339874-11343568
Accession: Q23500
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ZK455	Aconitase	PF00330.20	6.3e-181	1	1
ZK455	Aconitase	PF00330.20	6.3e-181	1	1
ZK455	Aconitase_C	PF00694.19	2.6e-40	1	1
ZK455	Aconitase_C	PF00694.19	2.6e-40	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ZK455.1.1	-	2831	NM_077497	ZK455.1.1	887 (aa)	NP_509898	Q23500
ZK455.1.2	-	3072	NM_077497	ZK455.1.2	887 (aa)	NP_509898	Q23500

Gene Model

Click here to download WBGene00000040's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00000040's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00000040	aco-1	99	61.425	ENSCING00000009541	-	99	61.425	Ciona_intestinalis
WBGene00000040	aco-1	94	65.657	ENSCSAVG00000011708	-	99	61.208	Ciona_savignyi
WBGene00000040	aco-1	98	64.553	FBgn0024958	Irp-1A	98	64.553	Drosophila_melanogaster
WBGene00000040	aco-1	99	64.430	FBgn0024957	Irp-1B	99	64.430	Drosophila_melanogaster
WBGene00000040	aco-1	98	63.949	ENSEBUG00000003892	-	97	63.949	Eptatretus_burgeri