EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00000123 (Gene tree)
Gene ID: -
Gene Symbol: ama-1
Alias: rpb-1
Full Name: DNA-directed RNA polymerase II subunit RPB1
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Plus strand
Length: 10154 bases
Position: chrIV:4248020-4258173
Accession: P16356
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
F36A4	RNA_pol_Rpb1_5	PF04998.17	1.2e-103	1	1
F36A4	RNA_pol_Rpb1_5	PF04998.17	1.2e-103	1	1
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	1	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	2	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	3	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	4	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	5	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	6	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	7	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	8	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	9	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	10	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	11	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	12	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	13	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	14	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	15	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	16	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	17	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	18	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	19	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	20	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	1	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	2	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	3	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	4	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	5	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	6	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	7	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	8	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	9	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	10	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	11	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	12	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	13	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	14	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	15	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	16	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	17	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	18	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	19	20
F36A4	RNA_pol_Rpb1_R	PF05001.13	1.1e-10	20	20
F36A4	RNA_pol_Rpb1_4	PF05000.17	1.1e-38	1	1
F36A4	RNA_pol_Rpb1_4	PF05000.17	1.1e-38	1	1
F36A4	RNA_pol_Rpb1_2	PF00623.20	1.3e-74	1	1
F36A4	RNA_pol_Rpb1_2	PF00623.20	1.3e-74	1	1
F36A4	RNA_pol_Rpb1_3	PF04983.18	2.8e-48	1	1
F36A4	RNA_pol_Rpb1_3	PF04983.18	2.8e-48	1	1
F36A4	RNA_pol_Rpb1_1	PF04997.12	1.4e-111	1	1
F36A4	RNA_pol_Rpb1_1	PF04997.12	1.4e-111	1	1
F36A4	RNA_pol_Rpb1_7	PF04990.12	4.3e-52	1	1
F36A4	RNA_pol_Rpb1_7	PF04990.12	4.3e-52	1	1
F36A4	RNA_pol_Rpb1_6	PF04992.14	8.9e-66	1	1
F36A4	RNA_pol_Rpb1_6	PF04992.14	8.9e-66	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
F36A4.7.1	-	6074	NM_068122	F36A4.7.1	1856 (aa)	NP_500523	P16356
F36A4.7.2	-	6024	NM_068122	F36A4.7.2	1856 (aa)	NP_500523	P16356

Gene Model

Click here to download WBGene00000123's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00000123's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00000123	ama-1	68	37.892	WBGene00004411	rpc-1	87	37.892
WBGene00000123	ama-1	54	45.455	WBGene00012999	rpoa-1	81	40.816

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00000123	ama-1	92	69.908	ENSAPOG00000006552	polr2a	94	70.209	Acanthochromis_polyacanthus
WBGene00000123	ama-1	99	72.727	ENSAMEG00000016265	-	94	69.712	Ailuropoda_melanoleuca
WBGene00000123	ama-1	99	79.612	ENSAOCG00000004255	polr2a	95	70.123	Amphiprion_ocellaris
WBGene00000123	ama-1	99	79.612	ENSAPEG00000012623	polr2a	98	71.429	Amphiprion_percula
WBGene00000123	ama-1	99	79.612	ENSATEG00000019644	polr2a	98	71.429	Anabas_testudineus
WBGene00000123	ama-1	99	72.727	ENSACAG00000014561	POLR2A	94	70.332	Anolis_carolinensis
WBGene00000123	ama-1	99	72.727	ENSANAG00000020093	-	94	70.025	Aotus_nancymaae
WBGene00000123	ama-1	99	79.612	ENSACLG00000006735	polr2a	98	71.429	Astatotilapia_calliptera
WBGene00000123	ama-1	99	79.612	ENSAMXG00000020046	polr2a	98	71.429	Astyanax_mexicanus
WBGene00000123	ama-1	99	72.727	ENSBTAG00000046765	POLR2A	94	70.025	Bos_taurus
WBGene00000123	ama-1	99	72.727	ENSCAFG00020007929	-	94	69.186	Canis_lupus_dingo
WBGene00000123	ama-1	99	72.727	ENSCHIG00000027173	-	94	70.025	Capra_hircus
WBGene00000123	ama-1	98	69.291	ENSCAPG00000001882	-	99	70.729	Cavia_aperea
WBGene00000123	ama-1	99	69.291	ENSCPOG00000014812	-	99	70.167	Cavia_porcellus
WBGene00000123	ama-1	99	72.727	ENSCCAG00000020938	-	94	70.025	Cebus_capucinus
WBGene00000123	ama-1	99	72.727	ENSCATG00000013680	-	94	70.025	Cercocebus_atys
WBGene00000123	ama-1	99	72.727	ENSCLAG00000012196	-	94	70.025	Chinchilla_lanigera
WBGene00000123	ama-1	99	72.727	ENSCSAG00000011644	-	94	69.186	Chlorocebus_sabaeus
WBGene00000123	ama-1	96	80.000	ENSCPBG00000012697	POLR2A	99	66.474	Chrysemys_picta_bellii
WBGene00000123	ama-1	96	67.089	ENSCING00000007884	-	98	68.859	Ciona_intestinalis
WBGene00000123	ama-1	99	67.278	ENSCSAVG00000008334	-	99	72.581	Ciona_savignyi
WBGene00000123	ama-1	99	72.727	ENSCANG00000010622	-	94	69.287	Colobus_angolensis_palliatus
WBGene00000123	ama-1	99	79.612	ENSCSEG00000002635	polr2a	99	71.429	Cynoglossus_semilaevis
WBGene00000123	ama-1	99	79.612	ENSCVAG00000005156	polr2a	98	71.429	Cyprinodon_variegatus
WBGene00000123	ama-1	99	79.612	ENSDARG00000099966	polr2a	98	71.429	Danio_rerio
WBGene00000123	ama-1	99	72.727	ENSDNOG00000016482	-	94	69.737	Dasypus_novemcinctus
WBGene00000123	ama-1	99	72.727	ENSDORG00000008667	Polr2a	94	70.025	Dipodomys_ordii
WBGene00000123	ama-1	90	68.506	ENSETEG00000002540	-	86	69.160	Echinops_telfairi
WBGene00000123	ama-1	99	74.194	ENSEASG00005019114	-	97	68.605	Equus_asinus_asinus
WBGene00000123	ama-1	99	72.727	ENSECAG00000018485	POLR2A	94	70.025	Equus_caballus
WBGene00000123	ama-1	80	72.151	ENSEEUG00000001154	-	94	73.810	Erinaceus_europaeus
WBGene00000123	ama-1	99	72.727	ENSFDAG00000008287	-	94	70.086	Fukomys_damarensis
WBGene00000123	ama-1	96	76.389	ENSFHEG00000001768	polr2a	99	70.202	Fundulus_heteroclitus
WBGene00000123	ama-1	96	68.592	ENSGMOG00000007725	polr2a	99	68.418	Gadus_morhua
WBGene00000123	ama-1	99	78.947	ENSGAFG00000005389	polr2a	99	70.264	Gambusia_affinis
WBGene00000123	ama-1	99	68.332	ENSGACG00000019366	polr2a	99	68.267	Gasterosteus_aculeatus
WBGene00000123	ama-1	99	72.727	ENSGGOG00000014800	-	95	70.113	Gorilla_gorilla
WBGene00000123	ama-1	93	81.132	ENSHBUG00000018937	polr2a	99	69.693	Haplochromis_burtoni
WBGene00000123	ama-1	99	72.727	ENSHGLG00000012381	POLR2A	94	70.086	Heterocephalus_glaber_female
WBGene00000123	ama-1	99	72.727	ENSHGLG00100014843	POLR2A	94	70.086	Heterocephalus_glaber_male
WBGene00000123	ama-1	99	78.641	ENSHCOG00000011874	polr2a	98	70.238	Hippocampus_comes
WBGene00000123	ama-1	99	79.612	ENSIPUG00000002613	Polr2a	98	71.429	Ictalurus_punctatus
WBGene00000123	ama-1	99	72.727	ENSSTOG00000001304	-	94	70.025	Ictidomys_tridecemlineatus
WBGene00000123	ama-1	99	72.727	ENSJJAG00000013049	Polr2a	94	70.086	Jaculus_jaculus
WBGene00000123	ama-1	84	63.579	ENSKMAG00000016343	polr2a	84	63.516	Kryptolebias_marmoratus
WBGene00000123	ama-1	99	79.612	ENSLBEG00000027652	polr2a	99	71.429	Labrus_bergylta
WBGene00000123	ama-1	98	75.833	ENSLACG00000012071	POLR2A	94	67.442	Latimeria_chalumnae
WBGene00000123	ama-1	99	72.727	ENSLAFG00000008626	-	94	70.025	Loxodonta_africana
WBGene00000123	ama-1	52	70.340	ENSMFAG00000007042	-	99	70.237	Macaca_fascicularis
WBGene00000123	ama-1	99	72.727	ENSMMUG00000023620	-	98	70.025	Macaca_mulatta
WBGene00000123	ama-1	99	72.727	ENSMNEG00000040407	-	98	69.717	Macaca_nemestrina
WBGene00000123	ama-1	98	72.727	ENSMLEG00000030263	-	99	70.237	Mandrillus_leucophaeus
WBGene00000123	ama-1	99	79.612	ENSMAMG00000003351	polr2a	98	71.429	Mastacembelus_armatus
WBGene00000123	ama-1	99	79.612	ENSMZEG00005021429	polr2a	98	71.429	Maylandia_zebra
WBGene00000123	ama-1	53	71.690	ENSMAUG00000021055	-	99	71.589	Mesocricetus_auratus
WBGene00000123	ama-1	99	72.727	ENSMICG00000013372	-	97	70.898	Microcebus_murinus
WBGene00000123	ama-1	99	69.291	ENSMOCG00000018279	Polr2a	99	68.552	Microtus_ochrogaster
WBGene00000123	ama-1	99	72.727	ENSMODG00000007009	-	94	69.840	Monodelphis_domestica
WBGene00000123	ama-1	94	81.081	ENSMALG00000008716	polr2a	99	70.006	Monopterus_albus
WBGene00000123	ama-1	99	71.901	MGP_CAROLIEiJ_G0016587	Polr2a	94	70.025	Mus_caroli
WBGene00000123	ama-1	99	71.901	ENSMUSG00000005198	Polr2a	94	70.025	Mus_musculus
WBGene00000123	ama-1	99	72.727	MGP_PahariEiJ_G0017718	Polr2a	94	69.186	Mus_pahari
WBGene00000123	ama-1	99	71.901	MGP_SPRETEiJ_G0017423	Polr2a	94	70.025	Mus_spretus
WBGene00000123	ama-1	99	72.727	ENSMPUG00000009648	-	94	69.902	Mustela_putorius_furo
WBGene00000123	ama-1	99	72.727	ENSMLUG00000009088	-	94	69.693	Myotis_lucifugus
WBGene00000123	ama-1	99	72.727	ENSNGAG00000002543	Polr2a	94	70.025	Nannospalax_galili
WBGene00000123	ama-1	93	73.736	ENSMEUG00000008611	-	92	73.626	Notamacropus_eugenii
WBGene00000123	ama-1	83	70.716	ENSOPRG00000015116	-	99	70.279	Ochotona_princeps
WBGene00000123	ama-1	99	79.612	ENSONIG00000009231	polr2a	98	71.429	Oreochromis_niloticus
WBGene00000123	ama-1	50	72.354	ENSOANG00000003303	-	97	72.246	Ornithorhynchus_anatinus
WBGene00000123	ama-1	99	68.075	ENSOCUG00000017929	-	99	69.859	Oryctolagus_cuniculus
WBGene00000123	ama-1	99	79.612	ENSORLG00000006431	polr2a	98	71.429	Oryzias_latipes
WBGene00000123	ama-1	99	79.612	ENSORLG00020010235	polr2a	98	71.429	Oryzias_latipes_hni
WBGene00000123	ama-1	99	79.612	ENSORLG00015007075	polr2a	98	71.429	Oryzias_latipes_hsok
WBGene00000123	ama-1	99	70.025	ENSOMEG00000010713	polr2a	99	71.149	Oryzias_melastigma
WBGene00000123	ama-1	99	72.727	ENSOGAG00000033608	-	94	70.123	Otolemur_garnettii
WBGene00000123	ama-1	95	72.727	ENSPPAG00000043734	-	89	69.957	Pan_paniscus
WBGene00000123	ama-1	99	72.727	ENSPANG00000024099	-	94	69.287	Papio_anubis
WBGene00000123	ama-1	81	70.167	ENSPKIG00000005727	polr2a	84	70.260	Paramormyrops_kingsleyae
WBGene00000123	ama-1	97	68.690	ENSPSIG00000014006	POLR2A	99	68.689	Pelodiscus_sinensis
WBGene00000123	ama-1	99	69.946	ENSPMGG00000019734	polr2a	90	85.882	Periophthalmus_magnuspinnatus
WBGene00000123	ama-1	99	72.727	ENSPEMG00000012521	Polr2a	94	70.025	Peromyscus_maniculatus_bairdii
WBGene00000123	ama-1	87	69.444	ENSPCIG00000028851	-	81	69.522	Phascolarctos_cinereus
WBGene00000123	ama-1	99	79.612	ENSPREG00000013122	polr2a	98	71.429	Poecilia_reticulata
WBGene00000123	ama-1	99	72.727	ENSPPYG00000007924	-	97	70.025	Pongo_abelii
WBGene00000123	ama-1	91	72.727	ENSPCAG00000006951	-	86	71.277	Procavia_capensis
WBGene00000123	ama-1	99	72.727	ENSPCOG00000025260	-	94	69.186	Propithecus_coquereli
WBGene00000123	ama-1	99	72.727	ENSPVAG00000005069	-	94	69.840	Pteropus_vampyrus
WBGene00000123	ama-1	99	79.612	ENSPNYG00000022340	polr2a	98	71.429	Pundamilia_nyererei
WBGene00000123	ama-1	99	79.612	ENSPNAG00000011237	polr2a	98	71.429	Pygocentrus_nattereri
WBGene00000123	ama-1	99	72.727	ENSRNOG00000028834	Polr2a	94	69.963	Rattus_norvegicus
WBGene00000123	ama-1	98	72.727	ENSRBIG00000002471	-	99	69.822	Rhinopithecus_bieti
WBGene00000123	ama-1	99	72.727	ENSRROG00000029583	-	99	69.858	Rhinopithecus_roxellana
WBGene00000123	ama-1	86	49.442	YDL140C	RPO21	99	68.786	Saccharomyces_cerevisiae
WBGene00000123	ama-1	99	72.727	ENSSBOG00000000808	-	94	70.025	Saimiri_boliviensis_boliviensis
WBGene00000123	ama-1	99	73.554	ENSSFOG00015023275	polr2a	98	70.245	Scleropages_formosus
WBGene00000123	ama-1	99	79.612	ENSSMAG00000009137	polr2a	94	71.429	Scophthalmus_maximus
WBGene00000123	ama-1	99	79.612	ENSSDUG00000020466	polr2a	98	70.238	Seriola_dumerili
WBGene00000123	ama-1	99	79.612	ENSSLDG00000020613	polr2a	98	70.238	Seriola_lalandi_dorsalis
WBGene00000123	ama-1	98	67.143	ENSSARG00000005875	-	99	67.649	Sorex_araneus
WBGene00000123	ama-1	99	79.612	ENSSPAG00000016741	polr2a	94	70.123	Stegastes_partitus
WBGene00000123	ama-1	99	72.727	ENSSSCG00000028278	-	94	69.410	Sus_scrofa
WBGene00000123	ama-1	96	70.568	ENSTRUG00000012320	polr2a	81	70.929	Takifugu_rubripes
WBGene00000123	ama-1	72	75.269	ENSTBEG00000013294	-	57	74.474	Tupaia_belangeri
WBGene00000123	ama-1	99	72.727	ENSTTRG00000014273	-	94	69.186	Tursiops_truncatus
WBGene00000123	ama-1	98	69.076	ENSUAMG00000014866	-	99	69.137	Ursus_americanus
WBGene00000123	ama-1	92	72.727	ENSUMAG00000015732	-	91	71.242	Ursus_maritimus
WBGene00000123	ama-1	62	75.748	ENSVPAG00000008842	-	76	75.748	Vicugna_pacos
WBGene00000123	ama-1	99	72.727	ENSXETG00000012465	polr2a	99	70.155	Xenopus_tropicalis
WBGene00000123	ama-1	99	79.612	ENSXMAG00000015687	polr2a	98	71.429	Xiphophorus_maculatus