EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00000479 (Gene tree)
Gene ID: -
Gene Symbol: cgh-1
Alias: -
Full Name: ATP-dependent RNA helicase cgh-1
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Minus strand
Length: 2513 bases
Position: chrIII:7495320-7497832
Accession: Q95YF3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
C07H6	DEAD	PF00270.29	4.8e-43	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
C07H6.5	-	2273	-	C07H6.5	430 (aa)	NP_498646	Q95YF3

Gene Model

Click here to download WBGene00000479's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00000479's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00000479	cgh-1	82	31.551	WBGene00013214	Y54G11A.3	74	31.551
WBGene00000479	cgh-1	85	31.880	WBGene00018997	F57B9.3	91	31.880
WBGene00000479	cgh-1	81	32.123	WBGene00019219	H20J04.4	74	32.044
WBGene00000479	cgh-1	85	38.315	WBGene00018007	F33D11.10	92	38.315
WBGene00000479	cgh-1	87	35.185	WBGene00001840	hel-1	89	35.185
WBGene00000479	cgh-1	81	30.607	WBGene00011580	ddx-19	75	30.239
WBGene00000479	cgh-1	90	32.506	WBGene00022148	ddx-27	53	32.506
WBGene00000479	cgh-1	85	38.587	WBGene00022029	Y65B4A.6	95	39.850
WBGene00000479	cgh-1	80	34.682	WBGene00012059	T26G10.1	76	33.602
WBGene00000479	cgh-1	85	39.402	WBGene00002083	inf-1	92	39.402
WBGene00000479	cgh-1	75	31.212	WBGene00015232	B0511.6	67	30.028
WBGene00000479	cgh-1	76	30.814	WBGene00019245	sacy-1	54	30.814

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00000479	cgh-1	93	72.886	ENSCING00000007421	-	92	72.886	Ciona_intestinalis
WBGene00000479	cgh-1	96	76.399	FBgn0004419	me31B	93	77.750	Drosophila_melanogaster
WBGene00000479	cgh-1	94	67.990	YDL160C	-	80	67.990	Saccharomyces_cerevisiae