EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00001169 (Gene tree)
Gene ID: -
Gene Symbol: eef-1A.2
Alias: -
Full Name: Elongation factor 1-alpha
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Plus strand
Length: 2118 bases
Position: chrX:7823652-7825769
Accession: P53013
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
R03G5	GTP_EFTU	PF00009.27	6.8e-56	1	1
R03G5	GTP_EFTU	PF00009.27	6.8e-56	1	1
R03G5	GTP_EFTU	PF00009.27	6.8e-56	1	1
R03G5	GTP_EFTU	PF00009.27	6.8e-56	1	1
R03G5	GTP_EFTU	PF00009.27	3.2e-44	1	1
R03G5	GTP_EFTU	PF00009.27	3.2e-44	1	1
R03G5	GTP_EFTU	PF00009.27	3.2e-44	1	1
R03G5	GTP_EFTU	PF00009.27	3.2e-44	1	1
R03G5	GTP_EFTU	PF00009.27	1.8e-43	1	1
R03G5	GTP_EFTU	PF00009.27	8.4e-12	1	1
R03G5	GTP_EFTU	PF00009.27	8.4e-12	1	1
R03G5	GTP_EFTU_D2	PF03144.25	1e-15	1	1
R03G5	GTP_EFTU_D2	PF03144.25	1e-15	1	1
R03G5	GTP_EFTU_D2	PF03144.25	1e-15	1	1
R03G5	GTP_EFTU_D2	PF03144.25	1e-15	1	1
R03G5	GTP_EFTU_D2	PF03144.25	1.2e-15	1	1
R03G5	GTP_EFTU_D2	PF03144.25	1.2e-15	1	1
R03G5	GTP_EFTU_D2	PF03144.25	1.2e-15	1	1
R03G5	GTP_EFTU_D2	PF03144.25	1.2e-15	1	1
R03G5	GTP_EFTU_D3	PF03143.17	5.4e-40	1	1
R03G5	GTP_EFTU_D3	PF03143.17	5.4e-40	1	1
R03G5	GTP_EFTU_D3	PF03143.17	5.4e-40	1	1
R03G5	GTP_EFTU_D3	PF03143.17	5.4e-40	1	1
R03G5	GTP_EFTU_D3	PF03143.17	6.2e-40	1	1
R03G5	GTP_EFTU_D3	PF03143.17	6.2e-40	1	1
R03G5	GTP_EFTU_D3	PF03143.17	6.2e-40	1	1
R03G5	GTP_EFTU_D3	PF03143.17	6.2e-40	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
R03G5.1d.4	-	1815	NM_182444	R03G5.1d.4	429 (aa)	NP_872244	G8JY74
R03G5.1a.4	-	1917	NM_076922	R03G5.1a.4	463 (aa)	NP_509323	P53013
R03G5.1a.3	-	1632	NM_076922	R03G5.1a.3	463 (aa)	NP_509323	P53013
R03G5.1a.2	-	1726	NM_076922	R03G5.1a.2	463 (aa)	NP_509323	P53013
R03G5.1a.1	-	1624	NM_076922	R03G5.1a.1	463 (aa)	NP_509323	P53013
R03G5.1d.1	-	1522	NM_182444	R03G5.1d.1	429 (aa)	NP_872244	G8JY74
R03G5.1b.1	-	752	-	R03G5.1b.1	77 (aa)	NP_872242	Q86NF4
R03G5.1b.2	-	750	-	R03G5.1b.2	77 (aa)	NP_872242	Q86NF4
R03G5.1c	-	1821	-	R03G5.1c	267 (aa)	NP_872243	Q86NF3
R03G5.1d.2	-	1624	NM_182444	R03G5.1d.2	429 (aa)	NP_872244	G8JY74
R03G5.1d.3	-	1530	NM_182444	R03G5.1d.3	429 (aa)	NP_872244	G8JY74

Gene Model

Click here to download WBGene00001169's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00001169's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00001169	eef-1A.2	77	55.932	WBGene00010622	K07A12.4	71	37.868
WBGene00001169	eef-1A.2	69	31.692	WBGene00007001	tufm-2	63	31.692
WBGene00001169	eef-1A.2	100	100.000	WBGene00001168	eef-1A.1	100	100.000
WBGene00001169	eef-1A.2	95	36.854	WBGene00010405	erfa-3	81	36.854

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00001169	eef-1A.2	62	55.515	ENSAPOG00000004685	-	80	56.419	Acanthochromis_polyacanthus
WBGene00001169	eef-1A.2	98	80.752	ENSAPOG00000004714	-	100	80.303	Acanthochromis_polyacanthus
WBGene00001169	eef-1A.2	90	81.687	ENSACIG00000001219	-	100	81.687	Amphilophus_citrinellus
WBGene00001169	eef-1A.2	87	82.178	ENSAOCG00000022002	-	100	81.643	Amphiprion_ocellaris
WBGene00001169	eef-1A.2	99	82.900	ENSAOCG00000022039	-	100	82.900	Amphiprion_ocellaris
WBGene00001169	eef-1A.2	99	82.251	ENSAPEG00000016361	-	100	82.251	Amphiprion_percula
WBGene00001169	eef-1A.2	98	83.628	ENSATEG00000003244	-	97	83.117	Anabas_testudineus
WBGene00001169	eef-1A.2	100	83.369	ENSACLG00000022560	-	100	83.369	Astatotilapia_calliptera
WBGene00001169	eef-1A.2	70	87.037	ENSCHIG00000013320	-	57	87.037	Capra_hircus
WBGene00001169	eef-1A.2	99	79.303	ENSCING00000021478	-	99	79.303	Ciona_intestinalis
WBGene00001169	eef-1A.2	87	89.552	ENSCING00000007703	-	99	77.468	Ciona_intestinalis
WBGene00001169	eef-1A.2	98	79.075	ENSCING00000018894	-	99	79.095	Ciona_intestinalis
WBGene00001169	eef-1A.2	87	89.552	ENSCING00000005126	-	100	77.897	Ciona_intestinalis
WBGene00001169	eef-1A.2	98	76.471	ENSCSAVG00000003196	-	100	76.333	Ciona_savignyi
WBGene00001169	eef-1A.2	98	80.000	ENSCSAVG00000009663	-	100	79.785	Ciona_savignyi
WBGene00001169	eef-1A.2	99	74.728	ENSCSAVG00000001085	-	91	74.728	Ciona_savignyi
WBGene00001169	eef-1A.2	100	79.914	ENSCSAVG00000006357	-	100	92.667	Ciona_savignyi
WBGene00001169	eef-1A.2	89	83.092	ENSCSEG00000007972	-	100	83.092	Cynoglossus_semilaevis
WBGene00001169	eef-1A.2	98	83.407	ENSCSEG00000008011	-	100	82.900	Cynoglossus_semilaevis
WBGene00001169	eef-1A.2	90	80.723	ENSCSEG00000007992	-	99	80.723	Cynoglossus_semilaevis
WBGene00001169	eef-1A.2	98	83.850	ENSCVAG00000019356	-	100	83.333	Cyprinodon_variegatus
WBGene00001169	eef-1A.2	87	94.030	FBgn0000557	eEF1alpha2	100	81.602	Drosophila_melanogaster
WBGene00001169	eef-1A.2	100	82.505	FBgn0284245	eEF1alpha1	100	82.505	Drosophila_melanogaster
WBGene00001169	eef-1A.2	99	78.308	ENSEBUG00000015814	-	100	78.308	Eptatretus_burgeri
WBGene00001169	eef-1A.2	99	84.416	ENSFHEG00000015054	-	100	84.416	Fundulus_heteroclitus
WBGene00001169	eef-1A.2	98	82.743	ENSGAFG00000014646	-	100	82.251	Gambusia_affinis
WBGene00001169	eef-1A.2	99	82.684	ENSGACG00000002143	-	100	82.684	Gasterosteus_aculeatus
WBGene00001169	eef-1A.2	98	82.965	ENSGACG00000002182	-	100	82.468	Gasterosteus_aculeatus
WBGene00001169	eef-1A.2	59	79.528	ENSHBUG00000017166	-	95	79.528	Haplochromis_burtoni
WBGene00001169	eef-1A.2	98	82.743	ENSHCOG00000008468	-	100	82.251	Hippocampus_comes
WBGene00001169	eef-1A.2	99	79.610	ENSHCOG00000008489	-	100	79.610	Hippocampus_comes
WBGene00001169	eef-1A.2	99	80.911	ENSLBEG00000002955	-	100	80.911	Labrus_bergylta
WBGene00001169	eef-1A.2	98	82.522	ENSLBEG00000002759	-	100	82.035	Labrus_bergylta
WBGene00001169	eef-1A.2	98	83.628	ENSMAMG00000007715	-	100	83.117	Mastacembelus_armatus
WBGene00001169	eef-1A.2	99	81.562	ENSMMOG00000001106	-	99	81.562	Mola_mola
WBGene00001169	eef-1A.2	99	73.742	ENSMMOG00000018160	-	100	88.043	Mola_mola
WBGene00001169	eef-1A.2	98	83.407	ENSMMOG00000001165	-	100	92.045	Mola_mola
WBGene00001169	eef-1A.2	100	72.414	ENSNBRG00000017346	-	100	72.414	Neolamprologus_brichardi
WBGene00001169	eef-1A.2	87	89.552	ENSONIG00000017760	-	98	82.955	Oreochromis_niloticus
WBGene00001169	eef-1A.2	98	83.186	ENSORLG00000007614	eef1a	100	82.684	Oryzias_latipes
WBGene00001169	eef-1A.2	99	83.801	ENSORLG00015002397	-	100	83.801	Oryzias_latipes_hsok
WBGene00001169	eef-1A.2	98	83.407	ENSOMEG00000018226	-	100	82.900	Oryzias_melastigma
WBGene00001169	eef-1A.2	69	83.019	ENSPPRG00000005836	-	69	86.275	Panthera_pardus
WBGene00001169	eef-1A.2	94	49.083	ENSPMGG00000022427	-	97	60.000	Periophthalmus_magnuspinnatus
WBGene00001169	eef-1A.2	98	83.186	ENSPMGG00000023911	-	100	94.253	Periophthalmus_magnuspinnatus
WBGene00001169	eef-1A.2	98	82.743	ENSPFOG00000003924	-	99	82.251	Poecilia_formosa
WBGene00001169	eef-1A.2	98	82.743	ENSPLAG00000004316	-	100	82.251	Poecilia_latipinna
WBGene00001169	eef-1A.2	98	82.965	ENSPMEG00000001010	-	100	82.468	Poecilia_mexicana
WBGene00001169	eef-1A.2	99	83.550	ENSPREG00000008243	-	100	83.550	Poecilia_reticulata
WBGene00001169	eef-1A.2	100	83.369	ENSPNYG00000007263	-	100	83.369	Pundamilia_nyererei
WBGene00001169	eef-1A.2	87	89.552	YBR118W	TEF2	100	78.091	Saccharomyces_cerevisiae
WBGene00001169	eef-1A.2	87	89.552	YPR080W	TEF1	100	78.091	Saccharomyces_cerevisiae
WBGene00001169	eef-1A.2	57	78.776	ENSSMAG00000016277	-	100	78.039	Scophthalmus_maximus
WBGene00001169	eef-1A.2	87	92.537	ENSSMAG00000018469	-	100	75.000	Scophthalmus_maximus
WBGene00001169	eef-1A.2	98	83.186	ENSSDUG00000008198	-	100	82.684	Seriola_dumerili
WBGene00001169	eef-1A.2	98	82.301	ENSSPAG00000001710	-	100	81.818	Stegastes_partitus
WBGene00001169	eef-1A.2	98	83.850	ENSTRUG00000005727	ef-1a	100	83.333	Takifugu_rubripes
WBGene00001169	eef-1A.2	99	82.430	ENSTRUG00000005066	-	99	82.430	Takifugu_rubripes
WBGene00001169	eef-1A.2	87	92.537	ENSTNIG00000002617	-	94	82.444	Tetraodon_nigroviridis
WBGene00001169	eef-1A.2	98	84.292	ENSTNIG00000002619	-	100	83.766	Tetraodon_nigroviridis
WBGene00001169	eef-1A.2	98	82.743	ENSXCOG00000001542	-	100	94.253	Xiphophorus_couchianus