EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00001423 (Gene tree)
Gene ID: -
Gene Symbol: fib-1
Alias: -
Full Name: rRNA 2'-O-methyltransferase fibrillarin
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Minus strand
Length: 1621 bases
Position: chrV:15000653-15002273
Accession: Q22053
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
T01C3	Fibrillarin	PF01269.17	1.6e-107	1	1
T01C3	Fibrillarin	PF01269.17	1.6e-107	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
T01C3.7.1	-	1423	NM_074290	T01C3.7.1	352 (aa)	NP_506691	Q22053
T01C3.7.2	-	1175	NM_074290	T01C3.7.2	352 (aa)	NP_506691	Q22053

Gene Model

Click here to download WBGene00001423's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00001423's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00001423	fib-1	67	72.458	ENSG00000188573	FBLL1	69	73.593	Homo_sapiens
WBGene00001423	fib-1	67	75.745	ENSG00000105202	FBL	100	76.419	Homo_sapiens
WBGene00001423	fib-1	74	73.077	ENSAPOG00000015135	fbl	72	78.448	Acanthochromis_polyacanthus
WBGene00001423	fib-1	72	69.048	ENSAMEG00000007104	FBLL1	91	73.593	Ailuropoda_melanoleuca
WBGene00001423	fib-1	71	77.200	ENSACIG00000010958	fbl	80	78.788	Amphilophus_citrinellus
WBGene00001423	fib-1	83	64.646	ENSAOCG00000008806	fbl	74	80.090	Amphiprion_ocellaris
WBGene00001423	fib-1	74	73.462	ENSAPEG00000011843	fbl	74	80.090	Amphiprion_percula
WBGene00001423	fib-1	77	74.444	ENSATEG00000000569	fbl	74	79.310	Anabas_testudineus
WBGene00001423	fib-1	78	70.545	ENSACAG00000016787	-	76	75.949	Anolis_carolinensis
WBGene00001423	fib-1	78	58.333	ENSANAG00000019689	-	69	69.159	Aotus_nancymaae
WBGene00001423	fib-1	79	68.459	ENSANAG00000029424	-	81	75.862	Aotus_nancymaae
WBGene00001423	fib-1	82	71.528	ENSACLG00000005227	fbl	74	78.879	Astatotilapia_calliptera
WBGene00001423	fib-1	80	68.440	ENSAMXG00000037402	fbl	62	79.545	Astyanax_mexicanus
WBGene00001423	fib-1	66	73.707	ENSBTAG00000004657	FBLL1	79	73.707	Bos_taurus
WBGene00001423	fib-1	67	72.458	ENSCJAG00000015548	FBLL1	69	73.593	Callithrix_jacchus
WBGene00001423	fib-1	67	75.319	ENSCJAG00000040785	FBL	58	75.862	Callithrix_jacchus
WBGene00001423	fib-1	83	67.235	ENSCAFG00000005412	FBL	74	76.293	Canis_familiaris
WBGene00001423	fib-1	83	67.577	ENSCAFG00020015639	FBL	66	76.293	Canis_lupus_dingo
WBGene00001423	fib-1	67	71.186	ENSCAFG00020003509	FBLL1	76	71.983	Canis_lupus_dingo
WBGene00001423	fib-1	72	64.138	ENSCHIG00000021562	FBL	70	76.293	Capra_hircus
WBGene00001423	fib-1	77	65.926	ENSCHIG00000005751	FBLL1	73	73.707	Capra_hircus
WBGene00001423	fib-1	78	64.599	ENSTSYG00000030585	FBLL1	87	73.568	Carlito_syrichta
WBGene00001423	fib-1	67	75.745	ENSTSYG00000036873	FBL	72	76.293	Carlito_syrichta
WBGene00001423	fib-1	54	73.822	ENSCAPG00000009974	FBL	65	74.468	Cavia_aperea
WBGene00001423	fib-1	63	63.801	ENSCAPG00000008751	FBLL1	100	63.801	Cavia_aperea
WBGene00001423	fib-1	67	75.319	ENSCPOG00000010192	FBL	74	75.862	Cavia_porcellus
WBGene00001423	fib-1	68	64.167	ENSCPOG00000025737	FBLL1	69	65.801	Cavia_porcellus
WBGene00001423	fib-1	67	75.319	ENSCCAG00000004830	FBL	72	75.862	Cebus_capucinus
WBGene00001423	fib-1	67	75.745	ENSCATG00000039255	FBL	72	76.293	Cercocebus_atys
WBGene00001423	fib-1	72	68.235	ENSCLAG00000018056	FBLL1	91	71.489	Chinchilla_lanigera
WBGene00001423	fib-1	82	67.586	ENSCLAG00000001639	FBL	73	76.293	Chinchilla_lanigera
WBGene00001423	fib-1	67	75.745	ENSCSAG00000003783	FBL	73	76.293	Chlorocebus_sabaeus
WBGene00001423	fib-1	90	60.248	ENSCSAG00000010153	FBLL1	73	73.593	Chlorocebus_sabaeus
WBGene00001423	fib-1	69	76.033	ENSCPBG00000024047	-	75	75.949	Chrysemys_picta_bellii
WBGene00001423	fib-1	79	67.986	ENSCING00000005048	-	75	73.593	Ciona_intestinalis
WBGene00001423	fib-1	83	66.781	ENSCSAVG00000002367	-	100	74.074	Ciona_savignyi
WBGene00001423	fib-1	67	75.745	ENSCANG00000042053	FBL	72	76.293	Colobus_angolensis_palliatus
WBGene00001423	fib-1	83	64.846	ENSCANG00000043304	FBLL1	78	73.593	Colobus_angolensis_palliatus
WBGene00001423	fib-1	53	63.158	ENSCGRG00001024532	-	62	63.158	Cricetulus_griseus_chok1gshd
WBGene00001423	fib-1	70	64.085	ENSCGRG00000012705	Fbl	74	76.190	Cricetulus_griseus_crigri
WBGene00001423	fib-1	67	78.298	ENSCSEG00000010310	fbl	75	78.879	Cynoglossus_semilaevis
WBGene00001423	fib-1	67	77.215	ENSCVAG00000015561	fbl	74	78.448	Cyprinodon_variegatus
WBGene00001423	fib-1	69	77.778	ENSDARG00000053912	fbl	74	78.390	Danio_rerio
WBGene00001423	fib-1	83	68.942	ENSDORG00000005756	Fbl	75	76.293	Dipodomys_ordii
WBGene00001423	fib-1	64	44.541	FBgn0038090	CG10909	66	44.541	Drosophila_melanogaster
WBGene00001423	fib-1	66	76.293	FBgn0003062	Fib	67	76.293	Drosophila_melanogaster
WBGene00001423	fib-1	67	53.617	ENSETEG00000003164	FBL	72	53.879	Echinops_telfairi
WBGene00001423	fib-1	68	75.519	ENSEBUG00000016084	fbl	98	75.527	Eptatretus_burgeri
WBGene00001423	fib-1	90	65.723	ENSEASG00005011787	FBL	56	76.293	Equus_asinus_asinus
WBGene00001423	fib-1	67	77.966	ENSELUG00000022537	fbl	78	77.729	Esox_lucius
WBGene00001423	fib-1	83	67.918	ENSFCAG00000003026	FBL	74	76.293	Felis_catus
WBGene00001423	fib-1	83	66.212	ENSFDAG00000021499	FBL	72	75.862	Fukomys_damarensis
WBGene00001423	fib-1	68	70.833	ENSFDAG00000018404	FBLL1	81	71.915	Fukomys_damarensis
WBGene00001423	fib-1	70	77.143	ENSFHEG00000010854	fbl	73	78.879	Fundulus_heteroclitus
WBGene00001423	fib-1	70	76.423	ENSGMOG00000007678	fbl	75	78.261	Gadus_morhua
WBGene00001423	fib-1	60	78.095	ENSGAFG00000008992	fbl	97	79.512	Gambusia_affinis
WBGene00001423	fib-1	67	77.872	ENSGACG00000004194	fbl	98	78.855	Gasterosteus_aculeatus
WBGene00001423	fib-1	66	72.065	ENSGAGG00000003006	-	62	72.065	Gopherus_agassizii
WBGene00001423	fib-1	67	75.745	ENSGGOG00000013076	FBL	73	76.293	Gorilla_gorilla
WBGene00001423	fib-1	86	69.767	ENSHBUG00000011229	fbl	74	78.879	Haplochromis_burtoni
WBGene00001423	fib-1	77	66.790	ENSHGLG00000015259	FBLL1	75	73.160	Heterocephalus_glaber_female
WBGene00001423	fib-1	67	75.319	ENSHGLG00000009686	FBL	72	75.862	Heterocephalus_glaber_female
WBGene00001423	fib-1	67	75.319	ENSHGLG00100015471	FBL	72	75.862	Heterocephalus_glaber_male
WBGene00001423	fib-1	68	71.250	ENSHGLG00100021287	FBLL1	93	72.340	Heterocephalus_glaber_male
WBGene00001423	fib-1	81	69.366	ENSHCOG00000021211	fbl	75	78.879	Hippocampus_comes
WBGene00001423	fib-1	74	68.817	ENSIPUG00000009464	fbl	72	79.741	Ictalurus_punctatus
WBGene00001423	fib-1	67	75.319	ENSSTOG00000012486	FBL	73	75.862	Ictidomys_tridecemlineatus
WBGene00001423	fib-1	56	73.232	ENSSTOG00000031046	FBLL1	95	73.232	Ictidomys_tridecemlineatus
WBGene00001423	fib-1	77	65.683	ENSJJAG00000000811	Fbll1	81	72.414	Jaculus_jaculus
WBGene00001423	fib-1	67	75.319	ENSJJAG00000018359	Fbl	72	75.862	Jaculus_jaculus
WBGene00001423	fib-1	67	76.793	ENSKMAG00000003716	fbl	75	78.017	Kryptolebias_marmoratus
WBGene00001423	fib-1	65	78.261	ENSLBEG00000017315	fbl	80	77.586	Labrus_bergylta
WBGene00001423	fib-1	65	72.609	ENSLAFG00000032132	FBLL1	97	72.609	Loxodonta_africana
WBGene00001423	fib-1	67	75.319	ENSLAFG00000000171	FBL	73	75.862	Loxodonta_africana
WBGene00001423	fib-1	67	72.458	ENSMFAG00000036422	FBLL1	82	73.593	Macaca_fascicularis
WBGene00001423	fib-1	67	75.745	ENSMFAG00000043908	FBL	72	76.293	Macaca_fascicularis
WBGene00001423	fib-1	67	72.458	ENSMMUG00000012520	FBLL1	77	73.593	Macaca_mulatta
WBGene00001423	fib-1	67	75.745	ENSMMUG00000022725	FBL	80	76.374	Macaca_mulatta
WBGene00001423	fib-1	67	75.745	ENSMNEG00000040045	FBL	73	76.293	Macaca_nemestrina
WBGene00001423	fib-1	67	75.745	ENSMLEG00000042975	FBL	73	76.293	Mandrillus_leucophaeus
WBGene00001423	fib-1	83	63.918	ENSMLEG00000040259	FBLL1	74	73.593	Mandrillus_leucophaeus
WBGene00001423	fib-1	79	73.022	ENSMAMG00000006804	fbl	75	80.543	Mastacembelus_armatus
WBGene00001423	fib-1	86	69.767	ENSMZEG00005025246	fbl	74	78.879	Maylandia_zebra
WBGene00001423	fib-1	66	73.593	ENSMAUG00000015741	Fbll1	75	73.593	Mesocricetus_auratus
WBGene00001423	fib-1	83	67.918	ENSMICG00000007686	FBL	73	76.293	Microcebus_murinus
WBGene00001423	fib-1	67	72.766	ENSMOCG00000022683	Fbll1	77	73.913	Microtus_ochrogaster
WBGene00001423	fib-1	66	78.355	ENSMMOG00000006454	fbl	81	78.355	Mola_mola
WBGene00001423	fib-1	67	76.793	ENSMODG00000013702	-	72	78.017	Monodelphis_domestica
WBGene00001423	fib-1	77	71.852	ENSMALG00000015601	fbl	81	77.215	Monopterus_albus
WBGene00001423	fib-1	79	69.675	MGP_CAROLIEiJ_G0029434	Fbl	72	76.190	Mus_caroli
WBGene00001423	fib-1	88	61.812	MGP_CAROLIEiJ_G0016207	Fbll1	74	74.026	Mus_caroli
WBGene00001423	fib-1	88	62.136	ENSMUSG00000051062	Fbll1	74	74.026	Mus_musculus
WBGene00001423	fib-1	79	69.314	ENSMUSG00000046865	Fbl	71	76.293	Mus_musculus
WBGene00001423	fib-1	79	68.953	MGP_PahariEiJ_G0012670	Fbl	72	76.190	Mus_pahari
WBGene00001423	fib-1	88	63.754	MGP_PahariEiJ_G0017343	Fbll1	73	74.026	Mus_pahari
WBGene00001423	fib-1	79	69.314	MGP_SPRETEiJ_G0030532	Fbl	71	76.293	Mus_spretus
WBGene00001423	fib-1	88	62.136	MGP_SPRETEiJ_G0017048	Fbll1	74	74.026	Mus_spretus
WBGene00001423	fib-1	67	72.458	ENSMPUG00000013045	FBLL1	87	73.707	Mustela_putorius_furo
WBGene00001423	fib-1	54	76.720	ENSMLUG00000030525	FBL	97	76.720	Myotis_lucifugus
WBGene00001423	fib-1	79	64.621	ENSMLUG00000011858	FBLL1	74	72.222	Myotis_lucifugus
WBGene00001423	fib-1	67	72.881	ENSNGAG00000012285	Fbll1	74	73.593	Nannospalax_galili
WBGene00001423	fib-1	67	75.745	ENSNGAG00000022243	Fbl	74	76.190	Nannospalax_galili
WBGene00001423	fib-1	81	66.549	ENSNBRG00000024409	fbl	79	78.448	Neolamprologus_brichardi
WBGene00001423	fib-1	67	72.458	ENSNLEG00000031565	FBLL1	69	73.593	Nomascus_leucogenys
WBGene00001423	fib-1	80	66.782	ENSNLEG00000014234	FBL	72	76.293	Nomascus_leucogenys
WBGene00001423	fib-1	84	70.270	ENSMEUG00000014684	-	75	77.586	Notamacropus_eugenii
WBGene00001423	fib-1	67	75.319	ENSODEG00000001001	FBL	72	75.862	Octodon_degus
WBGene00001423	fib-1	90	66.139	ENSONIG00000008042	fbl	71	78.879	Oreochromis_niloticus
WBGene00001423	fib-1	64	77.974	ENSOANG00000014658	-	89	77.974	Ornithorhynchus_anatinus
WBGene00001423	fib-1	67	75.745	ENSOCUG00000009027	FBL	89	76.293	Oryctolagus_cuniculus
WBGene00001423	fib-1	73	69.202	ENSOCUG00000007557	FBLL1	86	73.160	Oryctolagus_cuniculus
WBGene00001423	fib-1	84	69.967	ENSORLG00000003405	fbl	67	79.310	Oryzias_latipes
WBGene00001423	fib-1	69	77.778	ENSORLG00020022508	fbl	73	79.310	Oryzias_latipes_hni
WBGene00001423	fib-1	84	69.492	ENSORLG00015011532	fbl	72	79.310	Oryzias_latipes_hsok
WBGene00001423	fib-1	87	66.124	ENSOMEG00000019309	fbl	75	79.821	Oryzias_melastigma
WBGene00001423	fib-1	83	67.918	ENSOGAG00000006463	FBL	66	76.293	Otolemur_garnettii
WBGene00001423	fib-1	90	61.371	ENSOARG00000006339	FBL	67	76.293	Ovis_aries
WBGene00001423	fib-1	65	71.491	ENSOARG00000014603	FBLL1	88	71.491	Ovis_aries
WBGene00001423	fib-1	67	75.745	ENSPPAG00000034630	FBL	72	76.293	Pan_paniscus
WBGene00001423	fib-1	70	70.325	ENSPPAG00000015519	-	90	73.593	Pan_paniscus
WBGene00001423	fib-1	83	67.918	ENSPPRG00000002187	FBL	74	76.293	Panthera_pardus
WBGene00001423	fib-1	67	71.610	ENSPPRG00000020963	FBLL1	51	72.414	Panthera_pardus
WBGene00001423	fib-1	67	75.745	ENSPTIG00000008381	FBL	80	76.293	Panthera_tigris_altaica
WBGene00001423	fib-1	62	73.059	ENSPTRG00000040021	-	72	73.611	Pan_troglodytes
WBGene00001423	fib-1	67	72.458	ENSPTRG00000046755	FBLL1	70	73.593	Pan_troglodytes
WBGene00001423	fib-1	67	75.745	ENSPTRG00000010982	FBL	72	76.293	Pan_troglodytes
WBGene00001423	fib-1	67	75.745	ENSPANG00000004118	FBL	72	76.293	Papio_anubis
WBGene00001423	fib-1	84	69.831	ENSPKIG00000018971	fbl	73	78.879	Paramormyrops_kingsleyae
WBGene00001423	fib-1	67	77.021	ENSPSIG00000004704	-	91	78.017	Pelodiscus_sinensis
WBGene00001423	fib-1	81	66.667	ENSPMGG00000003564	fbl	74	80.543	Periophthalmus_magnuspinnatus
WBGene00001423	fib-1	82	64.605	ENSPEMG00000020325	Fbll1	73	73.593	Peromyscus_maniculatus_bairdii
WBGene00001423	fib-1	77	70.849	ENSPEMG00000015440	-	73	76.190	Peromyscus_maniculatus_bairdii
WBGene00001423	fib-1	68	69.710	ENSPMAG00000007777	fbl	70	71.121	Petromyzon_marinus
WBGene00001423	fib-1	67	76.793	ENSPCIG00000014607	-	72	78.017	Phascolarctos_cinereus
WBGene00001423	fib-1	77	71.956	ENSPFOG00000000133	fbl	75	78.879	Poecilia_formosa
WBGene00001423	fib-1	75	73.106	ENSPLAG00000021499	fbl	87	78.788	Poecilia_latipinna
WBGene00001423	fib-1	67	77.872	ENSPMEG00000001897	fbl	75	78.879	Poecilia_mexicana
WBGene00001423	fib-1	67	77.872	ENSPREG00000018169	fbl	75	78.879	Poecilia_reticulata
WBGene00001423	fib-1	67	75.745	ENSPPYG00000009979	FBL	72	76.293	Pongo_abelii
WBGene00001423	fib-1	77	57.721	ENSPCAG00000011523	FBL	73	62.500	Procavia_capensis
WBGene00001423	fib-1	75	67.424	ENSPCOG00000020746	FBLL1	76	73.593	Propithecus_coquereli
WBGene00001423	fib-1	67	75.745	ENSPCOG00000015915	FBL	72	76.293	Propithecus_coquereli
WBGene00001423	fib-1	83	68.493	ENSPVAG00000010849	FBL	73	75.862	Pteropus_vampyrus
WBGene00001423	fib-1	86	69.767	ENSPNYG00000014278	fbl	74	78.879	Pundamilia_nyererei
WBGene00001423	fib-1	67	78.059	ENSPNAG00000020888	fbl	73	79.545	Pygocentrus_nattereri
WBGene00001423	fib-1	67	73.191	ENSRNOG00000015303	Fbll1	72	73.707	Rattus_norvegicus
WBGene00001423	fib-1	79	69.675	ENSRNOG00000019229	Fbl	71	76.293	Rattus_norvegicus
WBGene00001423	fib-1	67	75.745	ENSRBIG00000029089	FBL	73	76.293	Rhinopithecus_bieti
WBGene00001423	fib-1	67	75.745	ENSRROG00000012374	FBL	72	76.293	Rhinopithecus_roxellana
WBGene00001423	fib-1	77	69.118	ENSSBOG00000033498	FBL	73	75.862	Saimiri_boliviensis_boliviensis
WBGene00001423	fib-1	73	69.084	ENSSBOG00000019476	FBLL1	79	73.593	Saimiri_boliviensis_boliviensis
WBGene00001423	fib-1	67	76.793	ENSSHAG00000003274	-	72	78.017	Sarcophilus_harrisii
WBGene00001423	fib-1	69	77.459	ENSSFOG00015019399	fbl	73	78.879	Scleropages_formosus
WBGene00001423	fib-1	75	69.434	ENSSMAG00000011853	fbl	74	79.204	Scophthalmus_maximus
WBGene00001423	fib-1	66	77.922	ENSSLDG00000002539	-	92	77.922	Seriola_lalandi_dorsalis
WBGene00001423	fib-1	67	76.371	ENSSPUG00000004770	-	75	76.371	Sphenodon_punctatus
WBGene00001423	fib-1	69	77.459	ENSSPAG00000019953	fbl	74	79.310	Stegastes_partitus
WBGene00001423	fib-1	78	68.498	ENSSSCG00000030510	FBL	74	76.293	Sus_scrofa
WBGene00001423	fib-1	67	72.458	ENSSSCG00000017013	FBLL1	70	73.593	Sus_scrofa
WBGene00001423	fib-1	77	71.852	ENSTRUG00000004408	fbl	78	79.464	Takifugu_rubripes
WBGene00001423	fib-1	67	78.723	ENSTNIG00000011668	fbl	74	80.000	Tetraodon_nigroviridis
WBGene00001423	fib-1	67	75.745	ENSTBEG00000007755	FBL	72	76.293	Tupaia_belangeri
WBGene00001423	fib-1	67	74.262	ENSTTRG00000003967	FBL	72	75.000	Tursiops_truncatus
WBGene00001423	fib-1	83	67.918	ENSUAMG00000001699	FBL	74	76.293	Ursus_americanus
WBGene00001423	fib-1	63	76.923	ENSUMAG00000019597	FBL	64	76.923	Ursus_maritimus
WBGene00001423	fib-1	83	67.235	ENSVVUG00000006111	FBL	74	76.293	Vulpes_vulpes
WBGene00001423	fib-1	80	65.018	ENSVVUG00000003074	FBLL1	80	72.294	Vulpes_vulpes
WBGene00001423	fib-1	67	76.170	ENSXETG00000017830	fbl	71	76.724	Xenopus_tropicalis
WBGene00001423	fib-1	69	75.820	ENSXCOG00000017201	fbl	69	78.355	Xiphophorus_couchianus
WBGene00001423	fib-1	71	76.400	ENSXMAG00000008522	fbl	74	78.448	Xiphophorus_maculatus