EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00001599 (Gene tree)
Gene ID: -
Gene Symbol: glh-2
Alias: -
Full Name: ATP-dependent RNA helicase glh-2
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Plus strand
Length: 3580 bases
Position: chrI:6513928-6517507
Accession: Q966L9
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
C55B7	zf-CCHC	PF00098.23	1.5e-38	1	6
C55B7	zf-CCHC	PF00098.23	1.5e-38	2	6
C55B7	zf-CCHC	PF00098.23	1.5e-38	3	6
C55B7	zf-CCHC	PF00098.23	1.5e-38	4	6
C55B7	zf-CCHC	PF00098.23	1.5e-38	5	6
C55B7	zf-CCHC	PF00098.23	1.5e-38	6	6
C55B7	ResIII	PF04851.15	7.3e-07	1	1
C55B7	DEAD	PF00270.29	2.4e-43	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
C55B7.1	-	3218	NM_059475	C55B7.1	974 (aa)	NP_491876	Q966L9

Gene Model

Click here to download WBGene00001599's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00001599's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00001599	glh-2	62	87.356	WBGene00001598	glh-1	98	87.398
WBGene00001599	glh-2	67	57.997	WBGene00001600	glh-3	72	68.774
WBGene00001599	glh-2	66	35.735	WBGene00001601	glh-4	50	34.360

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00001599	glh-2	52	41.499	ENSCING00000001412	-	89	41.176	Ciona_intestinalis
WBGene00001599	glh-2	79	39.213	ENSCSAVG00000004304	-	92	39.206	Ciona_savignyi