EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00001999 (Gene tree)
Gene ID: -
Gene Symbol: hrp-1
Alias: rbp-1
Full Name: Heterogeneous nuclear ribonucleoprotein A1
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Minus strand
Length: 1941 bases
Position: chrIV:3336927-3338867
Accession: Q22037
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
F42A6	RRM_1	PF00076.22	1.8e-32	1	2
F42A6	RRM_1	PF00076.22	1.8e-32	2	2
F42A6	RRM_1	PF00076.22	1.8e-32	1	2
F42A6	RRM_1	PF00076.22	1.8e-32	2	2
F42A6	RRM_1	PF00076.22	1.8e-32	1	2
F42A6	RRM_1	PF00076.22	1.8e-32	2	2
F42A6	RRM_1	PF00076.22	1.8e-32	1	2
F42A6	RRM_1	PF00076.22	1.8e-32	2	2
F42A6	RRM_1	PF00076.22	4.6e-26	1	2
F42A6	RRM_1	PF00076.22	4.6e-26	2	2
F42A6	RRM_1	PF00076.22	4.6e-26	1	2
F42A6	RRM_1	PF00076.22	4.6e-26	2	2
F42A6	RRM_1	PF00076.22	4.6e-26	1	2
F42A6	RRM_1	PF00076.22	4.6e-26	2	2
F42A6	RRM_1	PF00076.22	4.6e-26	1	2
F42A6	RRM_1	PF00076.22	4.6e-26	2	2
F42A6	RRM_1	PF00076.22	4.6e-26	1	2
F42A6	RRM_1	PF00076.22	4.6e-26	2	2
F42A6	RRM_1	PF00076.22	4.6e-26	1	2
F42A6	RRM_1	PF00076.22	4.6e-26	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
F42A6.7a.1	-	1548	-	F42A6.7a.1	346 (aa)	-	Q22037
F42A6.7a.2	-	1486	NM_067925	F42A6.7a.2	346 (aa)	NP_500326	Q22037
F42A6.7c.3	-	1645	-	F42A6.7c.3	308 (aa)	NP_001040944	UPI000052D05C
F42A6.7c.2	-	1513	-	F42A6.7c.2	308 (aa)	NP_001040944	UPI000052D05C
F42A6.7c.1	-	1378	-	F42A6.7c.1	308 (aa)	NP_001040944	UPI000052D05C
F42A6.7b.2	-	1516	-	F42A6.7b.2	309 (aa)	NP_001023199	UPI000007E726
F42A6.7b.3	-	1648	-	F42A6.7b.3	309 (aa)	NP_001023199	UPI000007E726
F42A6.7b.1	-	1381	-	F42A6.7b.1	309 (aa)	NP_001023199	UPI000007E726
F42A6.7d.1	-	1551	-	F42A6.7d.1	347 (aa)	-	UPI00005DC32A
F42A6.7d.2	-	1489	NM_001047480	F42A6.7d.2	347 (aa)	NP_001040945	UPI00005DC32A

Gene Model

Click here to download WBGene00001999's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00001999's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00001999	hrp-1	51	41.341	WBGene00019249	H28G03.1	55	41.341
WBGene00001999	hrp-1	80	33.766	WBGene00006331	sup-26	57	32.051
WBGene00001999	hrp-1	82	30.769	WBGene00003423	msi-1	62	37.500
WBGene00001999	hrp-1	50	30.921	WBGene00022235	sqd-1	59	30.366

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00001999	hrp-1	66	37.391	ENSG00000071626	DAZAP1	55	37.173	Homo_sapiens
WBGene00001999	hrp-1	66	36.364	ENSANAG00000036160	DAZAP1	54	36.453	Aotus_nancymaae
WBGene00001999	hrp-1	64	31.609	ENSACLG00000023187	dazap1	52	36.000	Astatotilapia_calliptera
WBGene00001999	hrp-1	84	41.463	ENSAMXG00000019066	dazap1	52	35.676	Astyanax_mexicanus
WBGene00001999	hrp-1	66	36.777	ENSBTAG00000019714	DAZAP1	54	36.946	Bos_taurus
WBGene00001999	hrp-1	76	33.333	ENSCJAG00000005609	DAZAP1	54	36.453	Callithrix_jacchus
WBGene00001999	hrp-1	51	42.373	ENSCAFG00000019528	DAZAP1	69	42.373	Canis_familiaris
WBGene00001999	hrp-1	66	42.857	ENSCAFG00020017166	DAZAP1	50	36.946	Canis_lupus_dingo
WBGene00001999	hrp-1	67	37.143	ENSCHIG00000024694	DAZAP1	50	38.119	Capra_hircus
WBGene00001999	hrp-1	51	39.474	ENSTSYG00000027054	DAZAP1	55	38.119	Carlito_syrichta
WBGene00001999	hrp-1	76	34.694	ENSCAPG00000008229	DAZAP1	50	39.196	Cavia_aperea
WBGene00001999	hrp-1	69	42.857	ENSCPOG00000020185	DAZAP1	97	41.379	Cavia_porcellus
WBGene00001999	hrp-1	69	34.802	ENSCCAG00000023519	DAZAP1	54	36.453	Cebus_capucinus
WBGene00001999	hrp-1	66	36.777	ENSCATG00000029559	DAZAP1	54	36.946	Cercocebus_atys
WBGene00001999	hrp-1	51	40.838	ENSCLAG00000009221	DAZAP1	100	42.353	Chinchilla_lanigera
WBGene00001999	hrp-1	51	39.037	ENSCSAG00000012126	DAZAP1	50	36.946	Chlorocebus_sabaeus
WBGene00001999	hrp-1	51	42.857	ENSCPBG00000022951	DAZAP1	54	36.453	Chrysemys_picta_bellii
WBGene00001999	hrp-1	54	37.963	ENSCSAVG00000004457	-	90	37.963	Ciona_savignyi
WBGene00001999	hrp-1	50	37.079	ENSCSAVG00000001118	-	50	35.385	Ciona_savignyi
WBGene00001999	hrp-1	51	39.474	ENSCANG00000040380	DAZAP1	54	38.119	Colobus_angolensis_palliatus
WBGene00001999	hrp-1	80	37.143	ENSCGRG00001021763	Cirbp	54	38.824	Cricetulus_griseus_chok1gshd
WBGene00001999	hrp-1	76	34.286	ENSCGRG00000017446	Dazap1	52	38.049	Cricetulus_griseus_crigri
WBGene00001999	hrp-1	83	34.615	ENSDARG00000070846	dazap1	99	38.028	Danio_rerio
WBGene00001999	hrp-1	51	39.037	ENSDORG00000010038	Dazap1	50	37.688	Dipodomys_ordii
WBGene00001999	hrp-1	76	33.878	ENSETEG00000008636	DAZAP1	50	37.438	Echinops_telfairi
WBGene00001999	hrp-1	51	39.037	ENSEASG00005021718	DAZAP1	50	36.946	Equus_asinus_asinus
WBGene00001999	hrp-1	51	39.037	ENSECAG00000011805	DAZAP1	50	36.946	Equus_caballus
WBGene00001999	hrp-1	84	41.463	ENSELUG00000010286	dazap1	55	37.113	Esox_lucius
WBGene00001999	hrp-1	76	35.616	ENSFCAG00000010767	DAZAP1	54	36.946	Felis_catus
WBGene00001999	hrp-1	76	34.553	ENSFDAG00000001283	DAZAP1	51	39.409	Fukomys_damarensis
WBGene00001999	hrp-1	64	37.356	ENSFHEG00000016786	dazap1	51	41.463	Fundulus_heteroclitus
WBGene00001999	hrp-1	51	41.463	ENSGMOG00000001142	dazap1	56	36.548	Gadus_morhua
WBGene00001999	hrp-1	52	39.583	ENSGALG00000015200	DAZAP1	54	37.745	Gallus_gallus
WBGene00001999	hrp-1	58	37.356	ENSGACG00000008259	dazap1	54	38.021	Gasterosteus_aculeatus
WBGene00001999	hrp-1	52	42.029	ENSGAGG00000014290	DAZAP1	50	42.353	Gopherus_agassizii
WBGene00001999	hrp-1	52	42.029	ENSGGOG00000002814	DAZAP1	50	38.710	Gorilla_gorilla
WBGene00001999	hrp-1	64	37.356	ENSHBUG00000014707	dazap1	54	38.743	Haplochromis_burtoni
WBGene00001999	hrp-1	76	34.553	ENSHGLG00000017518	DAZAP1	51	39.409	Heterocephalus_glaber_female
WBGene00001999	hrp-1	51	40.838	ENSHGLG00100002588	DAZAP1	51	39.409	Heterocephalus_glaber_male
WBGene00001999	hrp-1	79	32.710	ENSIPUG00000006899	dazap1	58	36.946	Ictalurus_punctatus
WBGene00001999	hrp-1	51	39.247	ENSSTOG00000006401	DAZAP1	51	37.879	Ictidomys_tridecemlineatus
WBGene00001999	hrp-1	76	34.286	ENSJJAG00000000715	Dazap1	51	38.500	Jaculus_jaculus
WBGene00001999	hrp-1	63	38.356	ENSLACG00000009693	DAZAP1	53	37.838	Latimeria_chalumnae
WBGene00001999	hrp-1	53	36.224	ENSLOCG00000002243	dazap1	51	36.538	Lepisosteus_oculatus
WBGene00001999	hrp-1	51	39.037	ENSLAFG00000018103	DAZAP1	50	36.946	Loxodonta_africana
WBGene00001999	hrp-1	66	36.777	ENSMFAG00000000789	DAZAP1	54	37.688	Macaca_fascicularis
WBGene00001999	hrp-1	67	37.143	ENSMMUG00000003047	DAZAP1	52	38.119	Macaca_mulatta
WBGene00001999	hrp-1	66	36.777	ENSMNEG00000040014	DAZAP1	54	36.946	Macaca_nemestrina
WBGene00001999	hrp-1	66	36.777	ENSMLEG00000035079	DAZAP1	54	37.688	Mandrillus_leucophaeus
WBGene00001999	hrp-1	64	31.034	ENSMZEG00005016739	dazap1	52	36.486	Maylandia_zebra
WBGene00001999	hrp-1	72	44.048	ENSMAUG00000012188	Dazap1	100	41.860	Mesocricetus_auratus
WBGene00001999	hrp-1	66	37.860	ENSMICG00000003579	DAZAP1	54	37.838	Microcebus_murinus
WBGene00001999	hrp-1	76	34.146	ENSMOCG00000016931	Dazap1	100	41.860	Microtus_ochrogaster
WBGene00001999	hrp-1	69	36.123	ENSMODG00000005157	DAZAP1	54	37.745	Monodelphis_domestica
WBGene00001999	hrp-1	76	34.286	MGP_CAROLIEiJ_G0015574	Dazap1	100	41.860	Mus_caroli
WBGene00001999	hrp-1	76	34.286	ENSMUSG00000069565	Dazap1	100	41.860	Mus_musculus
WBGene00001999	hrp-1	76	34.286	MGP_PahariEiJ_G0030987	Dazap1	100	41.860	Mus_pahari
WBGene00001999	hrp-1	76	34.286	MGP_SPRETEiJ_G0016392	Dazap1	100	41.860	Mus_spretus
WBGene00001999	hrp-1	76	34.286	ENSNGAG00000003560	Dazap1	50	37.931	Nannospalax_galili
WBGene00001999	hrp-1	52	38.947	ENSNBRG00000004605	dazap1	54	37.566	Neolamprologus_brichardi
WBGene00001999	hrp-1	51	39.474	ENSNLEG00000001563	DAZAP1	55	38.119	Nomascus_leucogenys
WBGene00001999	hrp-1	76	34.553	ENSODEG00000013797	DAZAP1	51	39.409	Octodon_degus
WBGene00001999	hrp-1	52	38.743	ENSOANG00000014632	DAZAP1	50	38.916	Ornithorhynchus_anatinus
WBGene00001999	hrp-1	52	39.175	ENSOGAG00000000232	DAZAP1	50	37.864	Otolemur_garnettii
WBGene00001999	hrp-1	66	36.777	ENSOARG00000011726	DAZAP1	50	37.313	Ovis_aries
WBGene00001999	hrp-1	66	36.777	ENSPPAG00000033205	DAZAP1	54	37.688	Pan_paniscus
WBGene00001999	hrp-1	76	35.616	ENSPPRG00000012584	DAZAP1	54	36.946	Panthera_pardus
WBGene00001999	hrp-1	51	39.037	ENSPTIG00000012046	DAZAP1	55	37.688	Panthera_tigris_altaica
WBGene00001999	hrp-1	66	36.777	ENSPTRG00000010199	DAZAP1	54	36.946	Pan_troglodytes
WBGene00001999	hrp-1	51	39.474	ENSPANG00000004638	DAZAP1	54	38.119	Papio_anubis
WBGene00001999	hrp-1	87	42.683	ENSPKIG00000007696	dazap1	52	42.683	Paramormyrops_kingsleyae
WBGene00001999	hrp-1	52	42.029	ENSPSIG00000002760	DAZAP1	50	37.374	Pelodiscus_sinensis
WBGene00001999	hrp-1	76	34.146	ENSPEMG00000022548	Dazap1	50	38.500	Peromyscus_maniculatus_bairdii
WBGene00001999	hrp-1	69	36.123	ENSPCIG00000011156	DAZAP1	54	37.745	Phascolarctos_cinereus
WBGene00001999	hrp-1	66	36.777	ENSPPYG00000009316	DAZAP1	54	36.946	Pongo_abelii
WBGene00001999	hrp-1	51	42.857	ENSPCAG00000006539	DAZAP1	74	42.857	Procavia_capensis
WBGene00001999	hrp-1	53	40.704	ENSPCOG00000028522	DAZAP1	54	39.151	Propithecus_coquereli
WBGene00001999	hrp-1	51	39.247	ENSPVAG00000003169	DAZAP1	50	37.129	Pteropus_vampyrus
WBGene00001999	hrp-1	64	37.356	ENSPNYG00000017318	dazap1	54	38.743	Pundamilia_nyererei
WBGene00001999	hrp-1	98	33.636	ENSPNAG00000011639	dazap1	59	37.500	Pygocentrus_nattereri
WBGene00001999	hrp-1	76	34.286	ENSRNOG00000031387	Dazap1	50	37.931	Rattus_norvegicus
WBGene00001999	hrp-1	66	36.777	ENSRBIG00000032485	DAZAP1	54	37.688	Rhinopithecus_bieti
WBGene00001999	hrp-1	52	42.029	ENSRROG00000037347	DAZAP1	50	38.710	Rhinopithecus_roxellana
WBGene00001999	hrp-1	67	36.475	ENSSBOG00000021919	DAZAP1	55	37.313	Saimiri_boliviensis_boliviensis
WBGene00001999	hrp-1	68	37.247	ENSSHAG00000013511	DAZAP1	50	38.537	Sarcophilus_harrisii
WBGene00001999	hrp-1	73	42.683	ENSSFOG00015020338	dazap1	50	38.220	Scleropages_formosus
WBGene00001999	hrp-1	88	37.097	ENSSMAG00000021047	dazap1	54	41.463	Scophthalmus_maximus
WBGene00001999	hrp-1	51	38.172	ENSSPUG00000006680	DAZAP1	54	36.139	Sphenodon_punctatus
WBGene00001999	hrp-1	51	41.463	ENSSPAG00000002402	dazap1	54	38.743	Stegastes_partitus
WBGene00001999	hrp-1	66	36.777	ENSSSCG00000022528	DAZAP1	54	36.946	Sus_scrofa
WBGene00001999	hrp-1	51	39.894	ENSTGUG00000000869	-	50	37.297	Taeniopygia_guttata
WBGene00001999	hrp-1	51	39.037	ENSTTRG00000014336	DAZAP1	50	37.688	Tursiops_truncatus
WBGene00001999	hrp-1	57	37.915	ENSUMAG00000005845	DAZAP1	61	37.915	Ursus_maritimus
WBGene00001999	hrp-1	67	37.143	ENSVVUG00000022865	DAZAP1	52	38.119	Vulpes_vulpes
WBGene00001999	hrp-1	52	43.333	ENSXETG00000003704	dazap1	59	39.394	Xenopus_tropicalis