EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00002169 (Gene tree)
Gene ID: -
Gene Symbol: isw-1
Alias: -
Full Name: Chromatin-remodeling complex ATPase chain isw-1
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Minus strand
Length: 6092 bases
Position: chrIII:6703993-6710084
Accession: P41877
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
F37A4	ResIII	PF04851.15	4.1e-11	1	1
F37A4	DEAD	PF00270.29	7.3e-09	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
F37A4.8	-	3337	NM_066067	F37A4.8	1009 (aa)	NP_498468	P41877

Gene Model

Click here to download WBGene00002169's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00002169's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00002169	isw-1	97	63.673	ENSG00000102038	SMARCA1	93	63.673	Homo_sapiens
WBGene00002169	isw-1	95	64.087	ENSAPOG00000016035	smarca5	98	66.521	Acanthochromis_polyacanthus
WBGene00002169	isw-1	97	62.575	ENSAMEG00000015218	SMARCA1	93	62.575	Ailuropoda_melanoleuca
WBGene00002169	isw-1	89	65.111	ENSACIG00000016982	smarca5	99	65.856	Amphilophus_citrinellus
WBGene00002169	isw-1	95	64.087	ENSAOCG00000015578	smarca5	96	63.142	Amphiprion_ocellaris
WBGene00002169	isw-1	95	64.087	ENSAPEG00000011117	smarca5	99	66.824	Amphiprion_percula
WBGene00002169	isw-1	95	63.983	ENSATEG00000012894	smarca5	97	62.919	Anabas_testudineus
WBGene00002169	isw-1	97	63.545	ENSAPLG00000013149	SMARCA1	99	63.545	Anas_platyrhynchos
WBGene00002169	isw-1	99	62.303	ENSACAG00000011376	SMARCA1	96	62.660	Anolis_carolinensis
WBGene00002169	isw-1	97	59.394	ENSANAG00000023098	SMARCA1	93	59.394	Aotus_nancymaae
WBGene00002169	isw-1	95	63.777	ENSACLG00000025356	smarca5	96	62.747	Astatotilapia_calliptera
WBGene00002169	isw-1	99	61.820	ENSAMXG00000005709	smarca5	96	62.402	Astyanax_mexicanus
WBGene00002169	isw-1	88	66.073	ENSAMXG00000011227	smarca1	99	66.786	Astyanax_mexicanus
WBGene00002169	isw-1	97	62.802	ENSBTAG00000002292	SMARCA1	92	63.099	Bos_taurus
WBGene00002169	isw-1	97	63.655	ENSCJAG00000002868	SMARCA1	93	63.655	Callithrix_jacchus
WBGene00002169	isw-1	97	55.611	ENSCAFG00000018673	SMARCA1	99	58.440	Canis_familiaris
WBGene00002169	isw-1	97	63.434	ENSCAFG00020001751	SMARCA1	93	63.434	Canis_lupus_dingo
WBGene00002169	isw-1	97	63.030	ENSCHIG00000009837	SMARCA1	92	63.030	Capra_hircus
WBGene00002169	isw-1	97	63.370	ENSTSYG00000004240	SMARCA1	94	64.546	Carlito_syrichta
WBGene00002169	isw-1	96	63.432	ENSCPOG00000013601	SMARCA1	92	63.432	Cavia_porcellus
WBGene00002169	isw-1	97	60.949	ENSCCAG00000030817	SMARCA1	93	60.949	Cebus_capucinus
WBGene00002169	isw-1	97	62.911	ENSCATG00000015921	SMARCA1	92	64.536	Cercocebus_atys
WBGene00002169	isw-1	97	63.068	ENSCLAG00000002171	SMARCA1	93	63.068	Chinchilla_lanigera
WBGene00002169	isw-1	97	63.673	ENSCSAG00000008460	SMARCA1	93	63.673	Chlorocebus_sabaeus
WBGene00002169	isw-1	99	62.685	ENSCPBG00000001146	SMARCA1	94	62.685	Chrysemys_picta_bellii
WBGene00002169	isw-1	94	61.163	ENSCING00000004110	swi/snf	95	61.722	Ciona_intestinalis
WBGene00002169	isw-1	95	60.615	ENSCSAVG00000004620	-	100	62.848	Ciona_savignyi
WBGene00002169	isw-1	97	63.774	ENSCANG00000007183	SMARCA1	93	63.774	Colobus_angolensis_palliatus
WBGene00002169	isw-1	97	63.068	ENSCGRG00001010776	Smarca1	93	63.068	Cricetulus_griseus_chok1gshd
WBGene00002169	isw-1	94	64.025	ENSCGRG00000015301	Smarca1	96	62.933	Cricetulus_griseus_crigri
WBGene00002169	isw-1	95	63.880	ENSCSEG00000000328	smarca5	97	62.734	Cynoglossus_semilaevis
WBGene00002169	isw-1	95	63.777	ENSCVAG00000008668	smarca5	99	66.392	Cyprinodon_variegatus
WBGene00002169	isw-1	99	61.994	ENSDARG00000052348	smarca5	97	62.574	Danio_rerio
WBGene00002169	isw-1	95	61.919	ENSDARG00000012776	smarca1	94	62.563	Danio_rerio
WBGene00002169	isw-1	95	63.120	ENSDNOG00000004315	SMARCA1	92	63.674	Dasypus_novemcinctus
WBGene00002169	isw-1	95	63.505	ENSDORG00000009270	Smarca1	92	63.505	Dipodomys_ordii
WBGene00002169	isw-1	96	61.617	FBgn0011604	Iswi	97	60.588	Drosophila_melanogaster
WBGene00002169	isw-1	76	62.330	ENSETEG00000017426	SMARCA1	79	63.142	Echinops_telfairi
WBGene00002169	isw-1	94	62.229	ENSEBUG00000001239	smarca5	95	62.717	Eptatretus_burgeri
WBGene00002169	isw-1	97	60.826	ENSEASG00005008218	SMARCA1	99	60.887	Equus_asinus_asinus
WBGene00002169	isw-1	97	63.232	ENSECAG00000012106	SMARCA1	92	63.232	Equus_caballus
WBGene00002169	isw-1	79	58.609	ENSEEUG00000014927	SMARCA1	82	58.609	Erinaceus_europaeus
WBGene00002169	isw-1	95	62.652	ENSELUG00000010515	smarca1	98	62.500	Esox_lucius
WBGene00002169	isw-1	97	63.333	ENSFCAG00000018496	SMARCA1	93	63.333	Felis_catus
WBGene00002169	isw-1	90	64.891	ENSFALG00000000209	SMARCA1	98	64.962	Ficedula_albicollis
WBGene00002169	isw-1	95	63.303	ENSFDAG00000009818	SMARCA1	95	63.303	Fukomys_damarensis
WBGene00002169	isw-1	95	63.261	ENSFHEG00000007687	smarca5	91	66.589	Fundulus_heteroclitus
WBGene00002169	isw-1	96	63.934	ENSGALG00000008431	SMARCA1	97	63.417	Gallus_gallus
WBGene00002169	isw-1	95	63.777	ENSGAFG00000017731	smarca5	95	63.174	Gambusia_affinis
WBGene00002169	isw-1	96	63.812	ENSGAGG00000023575	SMARCA1	99	63.812	Gopherus_agassizii
WBGene00002169	isw-1	69	61.714	ENSGGOG00000012841	-	93	61.803	Gorilla_gorilla
WBGene00002169	isw-1	97	63.030	ENSHGLG00000003080	SMARCA1	93	63.030	Heterocephalus_glaber_female
WBGene00002169	isw-1	97	62.777	ENSHGLG00100001102	SMARCA1	98	62.777	Heterocephalus_glaber_male
WBGene00002169	isw-1	92	65.139	ENSHCOG00000005458	smarca5	92	64.633	Hippocampus_comes
WBGene00002169	isw-1	93	64.899	ENSIPUG00000016905	Smarca1	98	64.433	Ictalurus_punctatus
WBGene00002169	isw-1	97	62.638	ENSIPUG00000005229	SMARCA5	97	63.226	Ictalurus_punctatus
WBGene00002169	isw-1	97	63.471	ENSSTOG00000014524	SMARCA1	94	63.646	Ictidomys_tridecemlineatus
WBGene00002169	isw-1	96	62.959	ENSJJAG00000002593	Smarca1	92	63.402	Jaculus_jaculus
WBGene00002169	isw-1	95	63.571	ENSKMAG00000003777	smarca5	97	62.426	Kryptolebias_marmoratus
WBGene00002169	isw-1	94	62.866	ENSLBEG00000013295	SMARCA1	100	67.754	Labrus_bergylta
WBGene00002169	isw-1	99	62.264	ENSLBEG00000018112	smarca5	96	62.846	Labrus_bergylta
WBGene00002169	isw-1	99	61.840	ENSLACG00000016697	SMARCA1	99	62.366	Latimeria_chalumnae
WBGene00002169	isw-1	93	65.016	ENSLOCG00000014591	smarca1	93	64.809	Lepisosteus_oculatus
WBGene00002169	isw-1	96	62.755	ENSLAFG00000000896	SMARCA1	97	63.303	Loxodonta_africana
WBGene00002169	isw-1	97	63.673	ENSMFAG00000002117	SMARCA1	95	64.264	Macaca_fascicularis
WBGene00002169	isw-1	97	62.911	ENSMMUG00000008818	SMARCA1	99	64.523	Macaca_mulatta
WBGene00002169	isw-1	97	62.911	ENSMNEG00000041768	SMARCA1	95	64.264	Macaca_nemestrina
WBGene00002169	isw-1	97	63.673	ENSMLEG00000043198	SMARCA1	93	63.673	Mandrillus_leucophaeus
WBGene00002169	isw-1	95	63.880	ENSMAMG00000014294	smarca5	96	63.215	Mastacembelus_armatus
WBGene00002169	isw-1	95	63.777	ENSMZEG00005009369	smarca5	96	62.747	Maylandia_zebra
WBGene00002169	isw-1	99	61.988	ENSMGAG00000007042	SMARCA1	99	61.988	Meleagris_gallopavo
WBGene00002169	isw-1	94	64.405	ENSMAUG00000008133	Smarca1	92	63.303	Mesocricetus_auratus
WBGene00002169	isw-1	97	63.572	ENSMICG00000015768	SMARCA1	93	63.572	Microcebus_murinus
WBGene00002169	isw-1	96	63.330	ENSMOCG00000009464	Smarca1	92	63.099	Microtus_ochrogaster
WBGene00002169	isw-1	98	61.771	ENSMMOG00000005547	smarca5	99	62.462	Mola_mola
WBGene00002169	isw-1	97	62.941	ENSMODG00000013187	-	95	62.800	Monodelphis_domestica
WBGene00002169	isw-1	95	63.880	ENSMALG00000002081	smarca5	99	62.463	Monopterus_albus
WBGene00002169	isw-1	96	63.023	MGP_CAROLIEiJ_G0033034	Smarca1	91	63.023	Mus_caroli
WBGene00002169	isw-1	96	63.023	ENSMUSG00000031099	Smarca1	91	63.023	Mus_musculus
WBGene00002169	isw-1	96	63.126	MGP_PahariEiJ_G0031579	Smarca1	91	63.126	Mus_pahari
WBGene00002169	isw-1	96	63.023	MGP_SPRETEiJ_G0034192	Smarca1	91	63.023	Mus_spretus
WBGene00002169	isw-1	97	62.475	ENSMPUG00000017423	SMARCA1	88	62.475	Mustela_putorius_furo
WBGene00002169	isw-1	97	62.450	ENSMLUG00000029614	SMARCA1	93	62.450	Myotis_lucifugus
WBGene00002169	isw-1	94	64.196	ENSNGAG00000006492	Smarca1	92	63.099	Nannospalax_galili
WBGene00002169	isw-1	95	63.880	ENSNBRG00000004463	smarca5	99	63.819	Neolamprologus_brichardi
WBGene00002169	isw-1	97	62.313	ENSNLEG00000015179	SMARCA1	97	63.136	Nomascus_leucogenys
WBGene00002169	isw-1	93	56.594	ENSMEUG00000008819	SMARCA1	99	56.594	Notamacropus_eugenii
WBGene00002169	isw-1	95	63.136	ENSODEG00000012163	SMARCA1	92	63.136	Octodon_degus
WBGene00002169	isw-1	95	63.880	ENSONIG00000009993	smarca5	96	62.846	Oreochromis_niloticus
WBGene00002169	isw-1	96	63.636	ENSOANG00000002862	SMARCA1	99	63.739	Ornithorhynchus_anatinus
WBGene00002169	isw-1	97	63.131	ENSOCUG00000001047	SMARCA1	93	63.131	Oryctolagus_cuniculus
WBGene00002169	isw-1	92	65.352	ENSORLG00000021998	smarca5	96	62.562	Oryzias_latipes
WBGene00002169	isw-1	92	65.352	ENSORLG00020017679	smarca5	96	62.562	Oryzias_latipes_hni
WBGene00002169	isw-1	92	65.352	ENSORLG00015017210	smarca5	96	62.562	Oryzias_latipes_hsok
WBGene00002169	isw-1	92	65.245	ENSOMEG00000000086	smarca5	96	62.463	Oryzias_melastigma
WBGene00002169	isw-1	95	63.951	ENSOGAG00000004399	SMARCA1	92	63.951	Otolemur_garnettii
WBGene00002169	isw-1	97	62.993	ENSOARG00000014638	SMARCA1	100	62.993	Ovis_aries
WBGene00002169	isw-1	97	63.673	ENSPPAG00000034647	SMARCA1	93	63.673	Pan_paniscus
WBGene00002169	isw-1	97	63.333	ENSPPRG00000008929	SMARCA1	93	63.333	Panthera_pardus
WBGene00002169	isw-1	97	61.768	ENSPTIG00000000915	SMARCA1	96	61.768	Panthera_tigris_altaica
WBGene00002169	isw-1	97	63.673	ENSPTRG00000049876	SMARCA1	92	64.536	Pan_troglodytes
WBGene00002169	isw-1	97	63.673	ENSPANG00000003871	SMARCA1	93	63.673	Papio_anubis
WBGene00002169	isw-1	94	63.466	ENSPKIG00000013411	smarca1	99	62.918	Paramormyrops_kingsleyae
WBGene00002169	isw-1	96	63.710	ENSPSIG00000010101	SMARCA1	99	63.710	Pelodiscus_sinensis
WBGene00002169	isw-1	94	64.301	ENSPEMG00000017503	Smarca1	92	63.201	Peromyscus_maniculatus_bairdii
WBGene00002169	isw-1	99	62.413	ENSPCIG00000015460	SMARCA1	98	62.512	Phascolarctos_cinereus
WBGene00002169	isw-1	95	63.674	ENSPFOG00000007649	smarca5	96	62.402	Poecilia_formosa
WBGene00002169	isw-1	95	63.674	ENSPLAG00000003363	smarca5	96	62.402	Poecilia_latipinna
WBGene00002169	isw-1	95	63.777	ENSPMEG00000019849	smarca5	96	62.500	Poecilia_mexicana
WBGene00002169	isw-1	95	63.777	ENSPREG00000023250	smarca5	96	62.500	Poecilia_reticulata
WBGene00002169	isw-1	97	61.049	ENSPPYG00000020703	SMARCA1	93	61.049	Pongo_abelii
WBGene00002169	isw-1	74	58.124	ENSPCOG00000020722	SMARCA1	94	61.103	Propithecus_coquereli
WBGene00002169	isw-1	89	66.156	ENSPVAG00000003805	SMARCA1	86	66.156	Pteropus_vampyrus
WBGene00002169	isw-1	59	63.755	ENSPNYG00000012299	smarca5	95	63.755	Pundamilia_nyererei
WBGene00002169	isw-1	97	62.828	ENSRNOG00000003762	Smarca1	93	62.828	Rattus_norvegicus
WBGene00002169	isw-1	97	63.774	ENSRROG00000034167	SMARCA1	93	63.774	Rhinopithecus_roxellana
WBGene00002169	isw-1	97	63.535	ENSSBOG00000020641	SMARCA1	100	63.535	Saimiri_boliviensis_boliviensis
WBGene00002169	isw-1	96	60.674	ENSSHAG00000013518	SMARCA1	99	61.224	Sarcophilus_harrisii
WBGene00002169	isw-1	92	65.745	ENSSFOG00015016794	smarca5	98	64.410	Scleropages_formosus
WBGene00002169	isw-1	99	62.327	ENSSFOG00015009043	smarca1	97	63.573	Scleropages_formosus
WBGene00002169	isw-1	97	62.903	ENSSMAG00000004801	smarca5	95	63.591	Scophthalmus_maximus
WBGene00002169	isw-1	95	63.674	ENSSDUG00000020690	smarca5	95	63.454	Seriola_dumerili
WBGene00002169	isw-1	95	63.674	ENSSLDG00000025190	smarca5	95	63.454	Seriola_lalandi_dorsalis
WBGene00002169	isw-1	82	63.830	ENSSARG00000000842	SMARCA1	83	63.830	Sorex_araneus
WBGene00002169	isw-1	93	64.632	ENSSPUG00000000590	SMARCA1	92	64.087	Sphenodon_punctatus
WBGene00002169	isw-1	95	63.983	ENSSPAG00000002894	smarca5	96	66.412	Stegastes_partitus
WBGene00002169	isw-1	96	63.432	ENSSSCG00000012649	SMARCA1	94	63.303	Sus_scrofa
WBGene00002169	isw-1	97	63.746	ENSTGUG00000003899	-	99	63.746	Taeniopygia_guttata
WBGene00002169	isw-1	95	63.169	ENSTRUG00000014094	smarca5	96	62.451	Takifugu_rubripes
WBGene00002169	isw-1	95	63.440	ENSTNIG00000017717	smarca5	95	62.710	Tetraodon_nigroviridis
WBGene00002169	isw-1	89	63.895	ENSTBEG00000014973	SMARCA1	90	63.895	Tupaia_belangeri
WBGene00002169	isw-1	95	60.776	ENSTTRG00000006168	SMARCA1	98	60.776	Tursiops_truncatus
WBGene00002169	isw-1	97	63.434	ENSUAMG00000020201	SMARCA1	93	63.434	Ursus_americanus
WBGene00002169	isw-1	97	59.880	ENSUMAG00000004073	SMARCA1	96	62.439	Ursus_maritimus
WBGene00002169	isw-1	75	63.855	ENSVPAG00000010492	-	78	63.855	Vicugna_pacos
WBGene00002169	isw-1	97	63.434	ENSVVUG00000008878	SMARCA1	99	64.256	Vulpes_vulpes
WBGene00002169	isw-1	97	63.508	ENSXETG00000001526	smarca1	98	63.407	Xenopus_tropicalis
WBGene00002169	isw-1	95	63.880	ENSXCOG00000011170	smarca5	98	63.300	Xiphophorus_couchianus
WBGene00002169	isw-1	95	63.880	ENSXMAG00000009678	smarca5	98	66.091	Xiphophorus_maculatus