EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00002244 (Gene tree)
Gene ID: -
Gene Symbol: laf-1
Alias: -
Full Name: ATP-dependent RNA helicase laf-1
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Minus strand
Length: 9696 bases
Position: chrIII:2769358-2779053
Accession: D0PV95
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y71H2AM	DEAD	PF00270.29	2.3e-45	1	1
Y71H2AM	DEAD	PF00270.29	2.8e-45	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y71H2AM.19b	-	3655	-	Y71H2AM.19b	708 (aa)	NP_001254859	D0PV95
Y71H2AM.19a	-	1967	NM_001267929	Y71H2AM.19a	643 (aa)	NP_001254858	UPI0000519532

Gene Model

Click here to download WBGene00002244's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00002244's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00002244	laf-1	57	32.075	WBGene00001840	hel-1	82	32.075
WBGene00002244	laf-1	67	41.591	WBGene00010260	ddx-17	91	37.925
WBGene00002244	laf-1	53	30.056	WBGene00013983	ZK512.2	57	30.484
WBGene00002244	laf-1	63	32.143	WBGene00011032	R05D11.4	67	32.854
WBGene00002244	laf-1	52	32.945	WBGene00015232	B0511.6	60	32.948
WBGene00002244	laf-1	67	35.000	WBGene00013214	Y54G11A.3	79	36.029
WBGene00002244	laf-1	67	39.690	WBGene00001600	glh-3	61	39.911
WBGene00002244	laf-1	62	31.078	WBGene00002083	inf-1	93	31.313
WBGene00002244	laf-1	61	31.204	WBGene00019219	H20J04.4	81	31.159
WBGene00002244	laf-1	65	42.105	WBGene00001598	glh-1	56	42.334
WBGene00002244	laf-1	65	31.293	WBGene00012059	T26G10.1	70	33.607
WBGene00002244	laf-1	63	33.002	WBGene00022029	Y65B4A.6	94	35.688
WBGene00002244	laf-1	62	35.294	WBGene00017162	ddx-23	56	35.529
WBGene00002244	laf-1	72	37.342	WBGene00019245	sacy-1	64	39.141
WBGene00002244	laf-1	63	33.002	WBGene00018007	F33D11.10	96	32.771
WBGene00002244	laf-1	76	61.475	WBGene00006888	vbh-1	78	60.437

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00002244	laf-1	89	52.090	ENSCING00000007637	-	87	52.941	Ciona_intestinalis
WBGene00002244	laf-1	75	58.704	FBgn0263231	bel	60	58.551	Drosophila_melanogaster
WBGene00002244	laf-1	73	57.569	ENSEBUG00000014402	-	75	55.268	Eptatretus_burgeri
WBGene00002244	laf-1	73	61.441	ENSPMAG00000003524	-	83	61.915	Petromyzon_marinus
WBGene00002244	laf-1	72	54.158	YOR204W	DED1	83	51.772	Saccharomyces_cerevisiae