EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00003076 (Gene tree)
Gene ID: -
Gene Symbol: lsm-1
Alias: -
Full Name: LSM Sm-like protein
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 599 bases
Position: chrII:11126932-11127530
Accession: Q20229
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
F40F8	LSM	PF01423.22	2.9e-16	1	1
F40F8	LSM	PF01423.22	2.9e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
F40F8.9.1	-	548	-	F40F8.9.1	125 (aa)	-	Q20229
F40F8.9.2	-	528	NM_063984	F40F8.9.2	125 (aa)	NP_496385	Q20229

Gene Model

Click here to download WBGene00003076's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00003076's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00003076	lsm-1	59	38.667	WBGene00003082	lsm-8	77	38.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00003076	lsm-1	73	58.065	ENSG00000175324	LSM1	86	71.053	Homo_sapiens
WBGene00003076	lsm-1	73	55.914	ENSAPOG00000010833	lsm1	70	55.914	Acanthochromis_polyacanthus
WBGene00003076	lsm-1	73	58.065	ENSAMEG00000011141	LSM1	70	58.065	Ailuropoda_melanoleuca
WBGene00003076	lsm-1	60	58.667	ENSACIG00000019593	lsm1	63	58.667	Amphilophus_citrinellus
WBGene00003076	lsm-1	73	55.914	ENSAOCG00000017997	-	70	55.914	Amphiprion_ocellaris
WBGene00003076	lsm-1	73	55.914	ENSAOCG00000017096	lsm1	70	55.914	Amphiprion_ocellaris
WBGene00003076	lsm-1	73	55.914	ENSAPEG00000011669	lsm1	70	55.914	Amphiprion_percula
WBGene00003076	lsm-1	90	50.000	ENSATEG00000022266	lsm1	87	50.000	Anabas_testudineus
WBGene00003076	lsm-1	73	58.065	ENSANAG00000027785	LSM1	84	72.973	Aotus_nancymaae
WBGene00003076	lsm-1	90	50.000	ENSACLG00000011400	lsm1	87	50.000	Astatotilapia_calliptera
WBGene00003076	lsm-1	90	50.847	ENSAMXG00000005441	lsm1	87	50.847	Astyanax_mexicanus
WBGene00003076	lsm-1	73	58.065	ENSBTAG00000001612	LSM1	70	58.065	Bos_taurus
WBGene00003076	lsm-1	73	58.065	ENSCJAG00000048015	LSM1	84	72.973	Callithrix_jacchus
WBGene00003076	lsm-1	73	58.065	ENSCAFG00000006113	LSM1	70	58.065	Canis_familiaris
WBGene00003076	lsm-1	73	58.065	ENSCAFG00020001822	LSM1	70	58.065	Canis_lupus_dingo
WBGene00003076	lsm-1	73	58.065	ENSCHIG00000013194	LSM1	70	58.065	Capra_hircus
WBGene00003076	lsm-1	73	58.065	ENSTSYG00000010394	LSM1	84	72.973	Carlito_syrichta
WBGene00003076	lsm-1	73	58.065	ENSCPOG00000032671	LSM1	70	58.065	Cavia_porcellus
WBGene00003076	lsm-1	73	58.065	ENSCCAG00000037171	LSM1	84	72.973	Cebus_capucinus
WBGene00003076	lsm-1	73	58.065	ENSCATG00000020377	LSM1	84	72.973	Cercocebus_atys
WBGene00003076	lsm-1	73	58.065	ENSCLAG00000001137	LSM1	70	58.065	Chinchilla_lanigera
WBGene00003076	lsm-1	73	58.065	ENSCSAG00000015485	LSM1	70	58.065	Chlorocebus_sabaeus
WBGene00003076	lsm-1	73	58.065	ENSCHOG00000006030	LSM1	70	58.065	Choloepus_hoffmanni
WBGene00003076	lsm-1	82	51.402	ENSCPBG00000006569	LSM1	71	51.402	Chrysemys_picta_bellii
WBGene00003076	lsm-1	61	57.895	ENSCING00000013536	-	81	47.414	Ciona_intestinalis
WBGene00003076	lsm-1	73	58.065	ENSCANG00000019173	LSM1	84	72.973	Colobus_angolensis_palliatus
WBGene00003076	lsm-1	73	58.065	ENSCGRG00001024560	-	70	58.065	Cricetulus_griseus_chok1gshd
WBGene00003076	lsm-1	55	57.971	ENSCGRG00001002259	-	60	57.971	Cricetulus_griseus_chok1gshd
WBGene00003076	lsm-1	55	57.971	ENSCGRG00000013603	-	60	57.971	Cricetulus_griseus_crigri
WBGene00003076	lsm-1	73	58.065	ENSCGRG00000006554	-	70	58.065	Cricetulus_griseus_crigri
WBGene00003076	lsm-1	90	50.000	ENSCSEG00000008319	lsm1	80	50.000	Cynoglossus_semilaevis
WBGene00003076	lsm-1	90	50.000	ENSCSEG00000010570	lsm1	80	50.000	Cynoglossus_semilaevis
WBGene00003076	lsm-1	90	49.153	ENSCVAG00000003871	lsm1	87	49.153	Cyprinodon_variegatus
WBGene00003076	lsm-1	90	51.695	ENSDARG00000043177	lsm1	87	51.695	Danio_rerio
WBGene00003076	lsm-1	73	58.065	ENSDNOG00000046387	-	70	58.065	Dasypus_novemcinctus
WBGene00003076	lsm-1	73	56.989	ENSDNOG00000030989	-	69	56.989	Dasypus_novemcinctus
WBGene00003076	lsm-1	61	48.684	ENSDNOG00000046620	-	64	48.684	Dasypus_novemcinctus
WBGene00003076	lsm-1	73	56.989	ENSDNOG00000032911	-	70	56.989	Dasypus_novemcinctus
WBGene00003076	lsm-1	73	58.065	ENSDORG00000028172	Lsm1	70	58.065	Dipodomys_ordii
WBGene00003076	lsm-1	66	54.878	FBgn0261067	LSm1	59	54.878	Drosophila_melanogaster
WBGene00003076	lsm-1	73	58.065	ENSEASG00005016677	LSM1	70	58.065	Equus_asinus_asinus
WBGene00003076	lsm-1	73	58.065	ENSECAG00000010461	LSM1	70	58.065	Equus_caballus
WBGene00003076	lsm-1	60	61.333	ENSEEUG00000015181	LSM1	76	61.333	Erinaceus_europaeus
WBGene00003076	lsm-1	73	56.989	ENSELUG00000023374	lsm1	70	56.989	Esox_lucius
WBGene00003076	lsm-1	73	56.989	ENSELUG00000002322	lsm1	70	56.989	Esox_lucius
WBGene00003076	lsm-1	73	58.065	ENSFCAG00000039335	LSM1	84	72.973	Felis_catus
WBGene00003076	lsm-1	79	52.885	ENSFALG00000006723	LSM1	86	52.885	Ficedula_albicollis
WBGene00003076	lsm-1	73	58.065	ENSFDAG00000007658	LSM1	70	58.065	Fukomys_damarensis
WBGene00003076	lsm-1	90	49.153	ENSFHEG00000009556	lsm1	87	49.153	Fundulus_heteroclitus
WBGene00003076	lsm-1	90	49.153	ENSGMOG00000016651	lsm1	85	49.153	Gadus_morhua
WBGene00003076	lsm-1	90	52.542	ENSGALG00000003245	LSM1	87	52.542	Gallus_gallus
WBGene00003076	lsm-1	90	49.153	ENSGAFG00000011355	lsm1	87	49.153	Gambusia_affinis
WBGene00003076	lsm-1	90	50.847	ENSGACG00000011763	lsm1	85	50.847	Gasterosteus_aculeatus
WBGene00003076	lsm-1	90	51.695	ENSGAGG00000024065	LSM1	87	51.695	Gopherus_agassizii
WBGene00003076	lsm-1	73	58.065	ENSGGOG00000022658	LSM1	84	72.973	Gorilla_gorilla
WBGene00003076	lsm-1	90	50.000	ENSHBUG00000010897	lsm1	87	50.000	Haplochromis_burtoni
WBGene00003076	lsm-1	73	58.065	ENSHGLG00000005711	LSM1	70	58.065	Heterocephalus_glaber_female
WBGene00003076	lsm-1	74	48.936	ENSHGLG00000017574	-	79	48.936	Heterocephalus_glaber_female
WBGene00003076	lsm-1	73	58.065	ENSHGLG00100017660	LSM1	70	58.065	Heterocephalus_glaber_male
WBGene00003076	lsm-1	74	48.936	ENSHGLG00100012152	-	79	48.936	Heterocephalus_glaber_male
WBGene00003076	lsm-1	73	55.914	ENSHCOG00000017233	lsm1	70	55.914	Hippocampus_comes
WBGene00003076	lsm-1	90	50.847	ENSIPUG00000002312	LSM1	87	50.847	Ictalurus_punctatus
WBGene00003076	lsm-1	60	61.333	ENSSTOG00000026870	LSM1	91	61.333	Ictidomys_tridecemlineatus
WBGene00003076	lsm-1	73	58.065	ENSJJAG00000014605	-	70	58.065	Jaculus_jaculus
WBGene00003076	lsm-1	90	50.000	ENSKMAG00000003016	lsm1	87	50.000	Kryptolebias_marmoratus
WBGene00003076	lsm-1	90	50.000	ENSLBEG00000022352	lsm1	87	50.000	Labrus_bergylta
WBGene00003076	lsm-1	82	52.778	ENSLACG00000010947	LSM1	88	52.778	Latimeria_chalumnae
WBGene00003076	lsm-1	70	57.303	ENSLOCG00000015149	lsm1	87	52.586	Lepisosteus_oculatus
WBGene00003076	lsm-1	73	58.065	ENSLAFG00000003534	LSM1	70	58.065	Loxodonta_africana
WBGene00003076	lsm-1	73	58.065	ENSMFAG00000032661	LSM1	84	72.973	Macaca_fascicularis
WBGene00003076	lsm-1	73	58.065	ENSMLEG00000034535	LSM1	84	72.973	Mandrillus_leucophaeus
WBGene00003076	lsm-1	90	50.000	ENSMAMG00000007464	lsm1	87	50.000	Mastacembelus_armatus
WBGene00003076	lsm-1	90	50.000	ENSMZEG00005010321	lsm1	87	50.000	Maylandia_zebra
WBGene00003076	lsm-1	90	52.542	ENSMGAG00000002125	LSM1	87	52.542	Meleagris_gallopavo
WBGene00003076	lsm-1	73	59.140	ENSMICG00000030726	LSM1	84	72.973	Microcebus_murinus
WBGene00003076	lsm-1	73	58.065	ENSMOCG00000022817	Lsm1	70	58.065	Microtus_ochrogaster
WBGene00003076	lsm-1	90	50.000	ENSMMOG00000015466	lsm1	87	50.000	Mola_mola
WBGene00003076	lsm-1	90	51.695	ENSMODG00000010732	-	87	51.695	Monodelphis_domestica
WBGene00003076	lsm-1	60	58.667	ENSMALG00000001478	lsm1	80	58.667	Monopterus_albus
WBGene00003076	lsm-1	73	58.065	MGP_CAROLIEiJ_G0030930	Lsm1	70	58.065	Mus_caroli
WBGene00003076	lsm-1	73	58.065	ENSMUSG00000037296	Lsm1	86	72.973	Mus_musculus
WBGene00003076	lsm-1	73	58.065	MGP_PahariEiJ_G0021400	Lsm1	70	58.065	Mus_pahari
WBGene00003076	lsm-1	73	58.065	MGP_SPRETEiJ_G0032049	Lsm1	70	58.065	Mus_spretus
WBGene00003076	lsm-1	90	52.174	ENSMPUG00000009883	LSM1	82	52.174	Mustela_putorius_furo
WBGene00003076	lsm-1	90	52.542	ENSMLUG00000003734	LSM1	87	52.542	Myotis_lucifugus
WBGene00003076	lsm-1	73	56.989	ENSNGAG00000003753	Lsm1	70	56.989	Nannospalax_galili
WBGene00003076	lsm-1	84	47.706	ENSNBRG00000017370	lsm1	93	47.706	Neolamprologus_brichardi
WBGene00003076	lsm-1	73	58.065	ENSNLEG00000029390	LSM1	84	72.973	Nomascus_leucogenys
WBGene00003076	lsm-1	90	51.695	ENSMEUG00000014077	LSM1	87	51.695	Notamacropus_eugenii
WBGene00003076	lsm-1	79	52.885	ENSOPRG00000000333	LSM1	87	52.885	Ochotona_princeps
WBGene00003076	lsm-1	73	58.065	ENSODEG00000004834	LSM1	70	58.065	Octodon_degus
WBGene00003076	lsm-1	90	50.000	ENSONIG00000010782	lsm1	87	50.000	Oreochromis_niloticus
WBGene00003076	lsm-1	90	51.695	ENSOANG00000003256	LSM1	87	51.695	Ornithorhynchus_anatinus
WBGene00003076	lsm-1	73	58.065	ENSOCUG00000015399	LSM1	70	58.065	Oryctolagus_cuniculus
WBGene00003076	lsm-1	90	50.847	ENSORLG00000030288	lsm1	87	50.847	Oryzias_latipes
WBGene00003076	lsm-1	90	50.847	ENSORLG00020006213	-	75	50.847	Oryzias_latipes_hni
WBGene00003076	lsm-1	90	50.847	ENSORLG00020003941	lsm1	87	50.847	Oryzias_latipes_hni
WBGene00003076	lsm-1	90	50.847	ENSORLG00015018350	lsm1	87	50.847	Oryzias_latipes_hsok
WBGene00003076	lsm-1	90	50.000	ENSOMEG00000012454	lsm1	87	50.000	Oryzias_melastigma
WBGene00003076	lsm-1	73	58.065	ENSOGAG00000015161	LSM1	70	58.065	Otolemur_garnettii
WBGene00003076	lsm-1	73	58.065	ENSOARG00000001317	LSM1	70	58.065	Ovis_aries
WBGene00003076	lsm-1	73	58.065	ENSPPAG00000032279	LSM1	84	72.973	Pan_paniscus
WBGene00003076	lsm-1	73	58.065	ENSPPRG00000014172	-	84	72.973	Panthera_pardus
WBGene00003076	lsm-1	73	58.065	ENSPTIG00000010289	LSM1	84	72.973	Panthera_tigris_altaica
WBGene00003076	lsm-1	73	58.065	ENSPTRG00000020169	LSM1	84	72.973	Pan_troglodytes
WBGene00003076	lsm-1	73	58.065	ENSPANG00000008814	LSM1	84	72.973	Papio_anubis
WBGene00003076	lsm-1	92	52.137	ENSPKIG00000019409	LSM1	83	52.137	Paramormyrops_kingsleyae
WBGene00003076	lsm-1	90	53.390	ENSPKIG00000001839	lsm1	87	53.390	Paramormyrops_kingsleyae
WBGene00003076	lsm-1	82	51.402	ENSPSIG00000012563	LSM1	81	51.402	Pelodiscus_sinensis
WBGene00003076	lsm-1	60	58.667	ENSPMGG00000022999	lsm1	71	58.667	Periophthalmus_magnuspinnatus
WBGene00003076	lsm-1	57	56.164	ENSPMAG00000002671	lsm1	65	56.164	Petromyzon_marinus
WBGene00003076	lsm-1	90	51.695	ENSPCIG00000008880	LSM1	87	51.695	Phascolarctos_cinereus
WBGene00003076	lsm-1	90	49.153	ENSPFOG00000016029	lsm1	87	49.153	Poecilia_formosa
WBGene00003076	lsm-1	90	49.153	ENSPLAG00000007879	lsm1	87	49.153	Poecilia_latipinna
WBGene00003076	lsm-1	90	49.153	ENSPMEG00000023550	lsm1	87	49.153	Poecilia_mexicana
WBGene00003076	lsm-1	90	49.153	ENSPREG00000009574	lsm1	87	49.153	Poecilia_reticulata
WBGene00003076	lsm-1	73	58.065	ENSPPYG00000018521	LSM1	70	58.065	Pongo_abelii
WBGene00003076	lsm-1	73	58.065	ENSPCOG00000020901	-	84	72.973	Propithecus_coquereli
WBGene00003076	lsm-1	73	58.065	ENSPVAG00000006016	LSM1	70	58.065	Pteropus_vampyrus
WBGene00003076	lsm-1	90	50.000	ENSPNYG00000018067	lsm1	87	50.000	Pundamilia_nyererei
WBGene00003076	lsm-1	90	50.847	ENSPNAG00000013707	lsm1	87	50.847	Pygocentrus_nattereri
WBGene00003076	lsm-1	73	56.989	ENSRNOG00000015375	Lsm1	70	56.989	Rattus_norvegicus
WBGene00003076	lsm-1	73	58.065	ENSRBIG00000027449	LSM1	84	72.973	Rhinopithecus_bieti
WBGene00003076	lsm-1	73	58.065	ENSRROG00000036074	LSM1	84	72.973	Rhinopithecus_roxellana
WBGene00003076	lsm-1	90	51.695	ENSSHAG00000017260	LSM1	87	51.695	Sarcophilus_harrisii
WBGene00003076	lsm-1	73	59.140	ENSSFOG00015019528	lsm1	70	59.140	Scleropages_formosus
WBGene00003076	lsm-1	90	50.000	ENSSMAG00000004930	lsm1	87	50.000	Scophthalmus_maximus
WBGene00003076	lsm-1	90	50.000	ENSSDUG00000021823	lsm1	87	50.000	Seriola_dumerili
WBGene00003076	lsm-1	90	50.000	ENSSLDG00000012154	lsm1	87	50.000	Seriola_lalandi_dorsalis
WBGene00003076	lsm-1	90	51.695	ENSSPUG00000014878	LSM1	87	51.695	Sphenodon_punctatus
WBGene00003076	lsm-1	73	55.914	ENSSPAG00000020548	lsm1	70	55.914	Stegastes_partitus
WBGene00003076	lsm-1	90	52.542	ENSSSCG00000039058	LSM1	87	52.542	Sus_scrofa
WBGene00003076	lsm-1	90	51.695	ENSTGUG00000004793	LSM1	87	51.695	Taeniopygia_guttata
WBGene00003076	lsm-1	90	50.847	ENSTRUG00000025239	lsm1	87	50.847	Takifugu_rubripes
WBGene00003076	lsm-1	90	50.000	ENSTNIG00000004055	lsm1	87	50.000	Tetraodon_nigroviridis
WBGene00003076	lsm-1	62	56.962	ENSTBEG00000015884	LSM1	68	56.962	Tupaia_belangeri
WBGene00003076	lsm-1	73	58.065	ENSTTRG00000004482	LSM1	70	58.065	Tursiops_truncatus
WBGene00003076	lsm-1	73	58.065	ENSUAMG00000004103	LSM1	70	58.065	Ursus_americanus
WBGene00003076	lsm-1	73	58.065	ENSUMAG00000009132	LSM1	70	58.065	Ursus_maritimus
WBGene00003076	lsm-1	60	61.333	ENSVPAG00000011593	LSM1	97	61.333	Vicugna_pacos
WBGene00003076	lsm-1	61	44.737	ENSVVUG00000014880	-	81	44.737	Vulpes_vulpes
WBGene00003076	lsm-1	73	58.065	ENSVVUG00000020191	LSM1	70	58.065	Vulpes_vulpes
WBGene00003076	lsm-1	90	51.639	ENSXETG00000009004	lsm1	88	51.639	Xenopus_tropicalis
WBGene00003076	lsm-1	73	54.839	ENSXCOG00000015631	lsm1	70	54.839	Xiphophorus_couchianus
WBGene00003076	lsm-1	73	54.839	ENSXMAG00000026637	lsm1	70	54.839	Xiphophorus_maculatus