EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
WBGene00003077 (Gene tree)
Gene ID
-
Gene Symbol
lsm-3
Alias
-
Full Name
LSM Sm-like protein
Gene Type
protein_coding
Species
Caenorhabditis_elegans
Status
putative
Strand
Plus strand
Length
1741 bases
Position
chrIV:13387469-13389209
Accession
Q9U1W8
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
Y62E10ALSMPF01423.222.1e-2211
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
Y62E10A.12a-417NM_070178Y62E10A.12a102 (aa)NP_502579Q9U1W8
Y62E10A.12b-619-Y62E10A.12b19 (aa)-UPI00049B2434
Gene Model
Click here to download WBGene00003077's gene model file
Protein-Protein Interaction (PPI)

Clik here to download WBGene00003077's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
WBGene00003077lsm-37737.805WBGene00004917snr-46939.024
WBGene00003077lsm-38136.145WBGene00003081lsm-77436.145
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
WBGene00003077lsm-310069.608ENSG00000170860LSM310069.608Homo_sapiens
WBGene00003077lsm-310069.608ENSAPOG00000018947lsm310069.608Acanthochromis_polyacanthus
WBGene00003077lsm-310069.608ENSAMEG00000009405LSM310069.608Ailuropoda_melanoleuca
WBGene00003077lsm-310069.608ENSACIG00000004574lsm37169.608Amphilophus_citrinellus
WBGene00003077lsm-310069.608ENSAOCG00000007658lsm310069.608Amphiprion_ocellaris
WBGene00003077lsm-310069.608ENSAPEG00000018621lsm310069.608Amphiprion_percula
WBGene00003077lsm-310069.608ENSATEG00000005153lsm310069.608Anabas_testudineus
WBGene00003077lsm-39075.000ENSAPLG00000014499LSM39775.000Anas_platyrhynchos
WBGene00003077lsm-310070.588ENSACAG00000013503LSM310070.588Anolis_carolinensis
WBGene00003077lsm-310067.647ENSANAG00000002903-10067.647Aotus_nancymaae
WBGene00003077lsm-310069.608ENSANAG00000034627LSM310069.608Aotus_nancymaae
WBGene00003077lsm-39073.913ENSACLG00000001726-8973.913Astatotilapia_calliptera
WBGene00003077lsm-310070.588ENSAMXG00000041214lsm310070.588Astyanax_mexicanus
WBGene00003077lsm-39075.000ENSBTAG00000007363LSM39675.000Bos_taurus
WBGene00003077lsm-310067.647ENSCAFG00000001760LSM310067.647Canis_familiaris
WBGene00003077lsm-310067.647ENSCAFG00020021584-10067.647Canis_lupus_dingo
WBGene00003077lsm-39866.000ENSCAFG00020016680-9866.000Canis_lupus_dingo
WBGene00003077lsm-310067.647ENSCAFG00020017266-10067.647Canis_lupus_dingo
WBGene00003077lsm-310062.617ENSCAFG00020020950-10062.617Canis_lupus_dingo
WBGene00003077lsm-310066.667ENSCAFG00020026452-10066.667Canis_lupus_dingo
WBGene00003077lsm-310069.608ENSCHIG00000024650LSM310069.608Capra_hircus
WBGene00003077lsm-310069.608ENSTSYG00000005204-10069.608Carlito_syrichta
WBGene00003077lsm-39853.000ENSTSYG00000028528-9853.000Carlito_syrichta
WBGene00003077lsm-39075.000ENSCAPG00000015760LSM39675.000Cavia_aperea
WBGene00003077lsm-310069.608ENSCPOG00000034071LSM310069.608Cavia_porcellus
WBGene00003077lsm-310069.608ENSCCAG00000036499-10069.608Cebus_capucinus
WBGene00003077lsm-39055.435ENSCCAG00000032763-8955.435Cebus_capucinus
WBGene00003077lsm-310069.608ENSCCAG00000019503-10069.608Cebus_capucinus
WBGene00003077lsm-310069.608ENSCATG00000039421LSM310069.608Cercocebus_atys
WBGene00003077lsm-38860.000ENSCATG00000031630-8760.000Cercocebus_atys
WBGene00003077lsm-310069.608ENSCLAG00000015997LSM310069.608Chinchilla_lanigera
WBGene00003077lsm-310064.706ENSCSAG00000019525-10064.706Chlorocebus_sabaeus
WBGene00003077lsm-310070.588ENSCPBG00000014531LSM310070.588Chrysemys_picta_bellii
WBGene00003077lsm-39773.737ENSCSAVG00000009542-9573.737Ciona_savignyi
WBGene00003077lsm-310066.667ENSCANG00000018782-10066.667Colobus_angolensis_palliatus
WBGene00003077lsm-310068.627ENSCANG00000038037-10068.627Colobus_angolensis_palliatus
WBGene00003077lsm-310069.608ENSCANG00000033944-10069.608Colobus_angolensis_palliatus
WBGene00003077lsm-310069.608ENSCGRG00001017598Lsm310069.608Cricetulus_griseus_chok1gshd
WBGene00003077lsm-39063.043ENSCGRG00001011396-9163.043Cricetulus_griseus_chok1gshd
WBGene00003077lsm-39059.140ENSCGRG00001008639-9459.140Cricetulus_griseus_chok1gshd
WBGene00003077lsm-39063.043ENSCGRG00000012129-9763.043Cricetulus_griseus_crigri
WBGene00003077lsm-310069.608ENSCGRG00000016159Lsm310069.608Cricetulus_griseus_crigri
WBGene00003077lsm-310069.608ENSCSEG00000015071lsm37769.608Cynoglossus_semilaevis
WBGene00003077lsm-310069.608ENSCVAG00000006933lsm310069.608Cyprinodon_variegatus
WBGene00003077lsm-310069.608ENSDARG00000089663lsm310069.608Danio_rerio
WBGene00003077lsm-310069.608ENSDNOG00000030808LSM310069.608Dasypus_novemcinctus
WBGene00003077lsm-38759.551ENSDORG00000024490-8559.551Dipodomys_ordii
WBGene00003077lsm-310069.608ENSDORG00000006894-10069.608Dipodomys_ordii
WBGene00003077lsm-38775.281FBgn0051184LSm38675.281Drosophila_melanogaster
WBGene00003077lsm-310069.608ENSETEG00000016207LSM310069.608Echinops_telfairi
WBGene00003077lsm-39077.174ENSEBUG00000004943lsm39077.174Eptatretus_burgeri
WBGene00003077lsm-310069.608ENSEASG00005015443LSM310069.608Equus_asinus_asinus
WBGene00003077lsm-310069.608ENSECAG00000007803LSM310069.608Equus_caballus
WBGene00003077lsm-310071.569ENSELUG00000018922lsm310071.569Esox_lucius
WBGene00003077lsm-310069.608ENSFCAG00000038453LSM310069.608Felis_catus
WBGene00003077lsm-39754.545ENSFCAG00000044344-9754.545Felis_catus
WBGene00003077lsm-310070.588ENSFALG00000012644LSM310070.588Ficedula_albicollis
WBGene00003077lsm-310069.608ENSFDAG00000011470LSM310069.608Fukomys_damarensis
WBGene00003077lsm-310069.608ENSFHEG00000000876lsm310069.608Fundulus_heteroclitus
WBGene00003077lsm-39073.913ENSGMOG00000011024lsm39773.913Gadus_morhua
WBGene00003077lsm-310069.608ENSGAFG00000013965lsm310069.608Gambusia_affinis
WBGene00003077lsm-310069.608ENSGACG00000003488lsm310069.608Gasterosteus_aculeatus
WBGene00003077lsm-310070.588ENSGAGG00000025707LSM310070.588Gopherus_agassizii
WBGene00003077lsm-310069.608ENSGGOG00000010006LSM310069.608Gorilla_gorilla
WBGene00003077lsm-310069.608ENSHBUG00000022399lsm310069.608Haplochromis_burtoni
WBGene00003077lsm-310069.608ENSHGLG00000000651LSM310069.608Heterocephalus_glaber_female
WBGene00003077lsm-310052.941ENSHGLG00000015564-10052.941Heterocephalus_glaber_female
WBGene00003077lsm-310069.608ENSHGLG00100011343LSM310069.608Heterocephalus_glaber_male
WBGene00003077lsm-310052.941ENSHGLG00100010658-10052.941Heterocephalus_glaber_male
WBGene00003077lsm-310069.608ENSHCOG00000013481lsm310069.608Hippocampus_comes
WBGene00003077lsm-310069.608ENSIPUG00000009207lsm310069.608Ictalurus_punctatus
WBGene00003077lsm-310069.608ENSSTOG00000006842LSM310069.608Ictidomys_tridecemlineatus
WBGene00003077lsm-310064.706ENSJJAG00000012797-10064.706Jaculus_jaculus
WBGene00003077lsm-310069.608ENSJJAG00000017351Lsm310069.608Jaculus_jaculus
WBGene00003077lsm-39357.895ENSJJAG00000018311-9257.895Jaculus_jaculus
WBGene00003077lsm-310069.608ENSKMAG00000015182lsm310069.608Kryptolebias_marmoratus
WBGene00003077lsm-39073.913ENSLBEG00000021292lsm39473.913Labrus_bergylta
WBGene00003077lsm-310070.588ENSLOCG00000013560lsm310070.588Lepisosteus_oculatus
WBGene00003077lsm-39075.000ENSLAFG00000023308LSM38975.000Loxodonta_africana
WBGene00003077lsm-310069.608ENSMFAG00000003185LSM310069.608Macaca_fascicularis
WBGene00003077lsm-38761.798ENSMMUG00000002294-8561.798Macaca_mulatta
WBGene00003077lsm-39057.609ENSMMUG00000043596-8957.609Macaca_mulatta
WBGene00003077lsm-310069.608ENSMMUG00000023126LSM310069.608Macaca_mulatta
WBGene00003077lsm-39857.000ENSMNEG00000037686-9857.000Macaca_nemestrina
WBGene00003077lsm-310069.608ENSMNEG00000043632LSM310069.608Macaca_nemestrina
WBGene00003077lsm-310069.608ENSMLEG00000036162LSM310069.608Mandrillus_leucophaeus
WBGene00003077lsm-310069.608ENSMAMG00000012807lsm310069.608Mastacembelus_armatus
WBGene00003077lsm-310069.608ENSMZEG00005016682lsm37369.608Maylandia_zebra
WBGene00003077lsm-39075.000ENSMGAG00000007776LSM39675.000Meleagris_gallopavo
WBGene00003077lsm-310069.608ENSMICG00000032361-10069.608Microcebus_murinus
WBGene00003077lsm-310056.863ENSMICG00000027821-10056.863Microcebus_murinus
WBGene00003077lsm-310069.608ENSMOCG00000014269Lsm310069.608Microtus_ochrogaster
WBGene00003077lsm-310069.608ENSMMOG00000020715lsm310069.608Mola_mola
WBGene00003077lsm-310069.608ENSMODG00000007275LSM310069.608Monodelphis_domestica
WBGene00003077lsm-310069.608ENSMALG00000006485lsm310069.608Monopterus_albus
WBGene00003077lsm-310069.608ENSMUSG00000034192Lsm310069.608Mus_musculus
WBGene00003077lsm-310069.608MGP_PahariEiJ_G0022402Lsm310069.608Mus_pahari
WBGene00003077lsm-310069.608MGP_SPRETEiJ_G0029681Lsm310069.608Mus_spretus
WBGene00003077lsm-38367.059ENSMPUG00000017256-10067.059Mustela_putorius_furo
WBGene00003077lsm-39963.366ENSMPUG00000019120-9963.366Mustela_putorius_furo
WBGene00003077lsm-310069.608ENSMLUG00000010677LSM310069.608Myotis_lucifugus
WBGene00003077lsm-39069.565ENSMLUG00000024700-9069.565Myotis_lucifugus
WBGene00003077lsm-37667.949ENSNGAG00000010207-8167.949Nannospalax_galili
WBGene00003077lsm-310069.608ENSNGAG00000022450Lsm310069.608Nannospalax_galili
WBGene00003077lsm-310050.000ENSNGAG00000013716-10050.000Nannospalax_galili
WBGene00003077lsm-310069.608ENSNBRG00000014318lsm310069.608Neolamprologus_brichardi
WBGene00003077lsm-310069.608ENSNLEG00000005079LSM310069.608Nomascus_leucogenys
WBGene00003077lsm-310061.765ENSNLEG00000030229-10061.765Nomascus_leucogenys
WBGene00003077lsm-310067.647ENSODEG00000019158-10067.647Octodon_degus
WBGene00003077lsm-310066.667ENSODEG00000019403-10066.667Octodon_degus
WBGene00003077lsm-310068.627ENSODEG00000019740-10068.627Octodon_degus
WBGene00003077lsm-310069.608ENSODEG00000001726LSM310069.608Octodon_degus
WBGene00003077lsm-310069.608ENSONIG00000021369-10069.608Oreochromis_niloticus
WBGene00003077lsm-310069.608ENSONIG00000000370lsm310069.608Oreochromis_niloticus
WBGene00003077lsm-310069.608ENSOANG00000012273LSM310069.608Ornithorhynchus_anatinus
WBGene00003077lsm-310069.608ENSOCUG00000027653-10069.608Oryctolagus_cuniculus
WBGene00003077lsm-310069.608ENSOCUG00000011088-10069.608Oryctolagus_cuniculus
WBGene00003077lsm-310069.608ENSORLG00000025900lsm310069.608Oryzias_latipes
WBGene00003077lsm-310069.608ENSORLG00020007125lsm310069.608Oryzias_latipes_hni
WBGene00003077lsm-310069.608ENSORLG00015002944lsm310069.608Oryzias_latipes_hsok
WBGene00003077lsm-310069.608ENSOMEG00000001915lsm310069.608Oryzias_melastigma
WBGene00003077lsm-310069.608ENSOGAG00000007659-10069.608Otolemur_garnettii
WBGene00003077lsm-310061.765ENSOGAG00000033051-10061.765Otolemur_garnettii
WBGene00003077lsm-39073.913ENSOGAG00000028858-9473.913Otolemur_garnettii
WBGene00003077lsm-39075.000ENSOARG00000000600LSM38975.000Ovis_aries
WBGene00003077lsm-310069.608ENSPPAG00000034074LSM310069.608Pan_paniscus
WBGene00003077lsm-39068.478ENSPPRG00000010610-8168.478Panthera_pardus
WBGene00003077lsm-310068.627ENSPPRG00000020953-10068.627Panthera_pardus
WBGene00003077lsm-310069.608ENSPPRG00000012912-10069.608Panthera_pardus
WBGene00003077lsm-310069.608ENSPTIG00000003463-10069.608Panthera_tigris_altaica
WBGene00003077lsm-310069.608ENSPTIG00000013072-10069.608Panthera_tigris_altaica
WBGene00003077lsm-310069.608ENSPTRG00000014650LSM310069.608Pan_troglodytes
WBGene00003077lsm-310069.608ENSPANG00000009378LSM310069.608Papio_anubis
WBGene00003077lsm-310055.882ENSPANG00000032192-10055.882Papio_anubis
WBGene00003077lsm-310070.588ENSPKIG00000008037lsm39170.588Paramormyrops_kingsleyae
WBGene00003077lsm-310070.588ENSPSIG00000015720LSM310070.588Pelodiscus_sinensis
WBGene00003077lsm-38874.444ENSPMGG00000012103lsm39174.444Periophthalmus_magnuspinnatus
WBGene00003077lsm-310069.608ENSPEMG00000015797Lsm310069.608Peromyscus_maniculatus_bairdii
WBGene00003077lsm-310054.902ENSPEMG00000020213-10054.902Peromyscus_maniculatus_bairdii
WBGene00003077lsm-310069.608ENSPFOG00000008372lsm310069.608Poecilia_formosa
WBGene00003077lsm-310069.608ENSPLAG00000000563lsm310069.608Poecilia_latipinna
WBGene00003077lsm-310069.608ENSPMEG00000022052lsm310069.608Poecilia_mexicana
WBGene00003077lsm-310069.608ENSPREG00000022485lsm310069.608Poecilia_reticulata
WBGene00003077lsm-310069.608ENSPPYG00000013402LSM310069.608Pongo_abelii
WBGene00003077lsm-310069.608ENSPCAG00000017077LSM310069.608Procavia_capensis
WBGene00003077lsm-310069.608ENSPCOG00000016217-10069.608Propithecus_coquereli
WBGene00003077lsm-38462.791ENSPCOG00000014435-8662.791Propithecus_coquereli
WBGene00003077lsm-310069.608ENSPVAG00000016795LSM310069.608Pteropus_vampyrus
WBGene00003077lsm-310069.608ENSPNYG00000009552lsm37369.608Pundamilia_nyererei
WBGene00003077lsm-310070.588ENSPNAG00000023467lsm310070.588Pygocentrus_nattereri
WBGene00003077lsm-310069.608ENSRNOG00000008733Lsm310069.608Rattus_norvegicus
WBGene00003077lsm-310069.608ENSRBIG00000034399LSM310069.608Rhinopithecus_bieti
WBGene00003077lsm-310058.824ENSRBIG00000043783-10058.824Rhinopithecus_bieti
WBGene00003077lsm-310059.804ENSRROG00000039868-10059.804Rhinopithecus_roxellana
WBGene00003077lsm-310069.608ENSRROG00000033276-10069.608Rhinopithecus_roxellana
WBGene00003077lsm-310058.824ENSRROG00000044047-10058.824Rhinopithecus_roxellana
WBGene00003077lsm-310056.863ENSRROG00000044056-10056.863Rhinopithecus_roxellana
WBGene00003077lsm-310069.608ENSSBOG00000024310LSM310069.608Saimiri_boliviensis_boliviensis
WBGene00003077lsm-310070.588ENSSFOG00015007071lsm310070.588Scleropages_formosus
WBGene00003077lsm-310069.608ENSSMAG00000001818lsm310069.608Scophthalmus_maximus
WBGene00003077lsm-310069.608ENSSDUG00000006040lsm310069.608Seriola_dumerili
WBGene00003077lsm-310069.608ENSSLDG00000006399lsm310069.608Seriola_lalandi_dorsalis
WBGene00003077lsm-35768.966ENSSARG00000005275-10068.966Sorex_araneus
WBGene00003077lsm-39075.000ENSSPUG00000017047-9675.000Sphenodon_punctatus
WBGene00003077lsm-310062.745ENSSPUG00000005394LSM310062.745Sphenodon_punctatus
WBGene00003077lsm-310062.745ENSSPAG00000000934lsm310062.745Stegastes_partitus
WBGene00003077lsm-39552.577ENSSSCG00000023718-9952.577Sus_scrofa
WBGene00003077lsm-310069.608ENSSSCG00000011601LSM310069.608Sus_scrofa
WBGene00003077lsm-310070.588ENSTGUG00000008327LSM310070.588Taeniopygia_guttata
WBGene00003077lsm-310069.608ENSTRUG00000023175lsm310069.608Takifugu_rubripes
WBGene00003077lsm-310069.608ENSTNIG00000005589lsm310069.608Tetraodon_nigroviridis
WBGene00003077lsm-39865.000ENSTBEG00000001050-9765.000Tupaia_belangeri
WBGene00003077lsm-310069.608ENSTTRG00000011197LSM310069.608Tursiops_truncatus
WBGene00003077lsm-310069.608ENSUAMG00000017250-10069.608Ursus_americanus
WBGene00003077lsm-310069.608ENSUMAG00000015905LSM310069.608Ursus_maritimus
WBGene00003077lsm-39075.000ENSVPAG00000010709LSM39775.000Vicugna_pacos
WBGene00003077lsm-310065.686ENSVVUG00000006481-10065.686Vulpes_vulpes
WBGene00003077lsm-310066.667ENSVVUG00000005684-10066.667Vulpes_vulpes
WBGene00003077lsm-38875.556ENSVVUG00000007332-8075.556Vulpes_vulpes
WBGene00003077lsm-310067.647ENSVVUG00000029294-10067.647Vulpes_vulpes
WBGene00003077lsm-39067.391ENSVVUG00000024228-9067.391Vulpes_vulpes
WBGene00003077lsm-310069.608ENSXETG00000011534lsm310069.608Xenopus_tropicalis
WBGene00003077lsm-310069.608ENSXCOG00000017432LSM310069.608Xiphophorus_couchianus
WBGene00003077lsm-310069.608ENSXMAG00000009151lsm310069.608Xiphophorus_maculatus

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