EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00003078 (Gene tree)
Gene ID: -
Gene Symbol: lsm-4
Alias: -
Full Name: Probable U6 snRNA-associated Sm-like protein LSm4
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Minus strand
Length: 993 bases
Position: chrII:7252230-7253222
Accession: Q19952
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
F32A5	LSM	PF01423.22	9.2e-18	1	1
F32A5	LSM	PF01423.22	9.2e-18	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
F32A5.7.1	-	668	-	F32A5.7.1	123 (aa)	NP_495514	Q19952
F32A5.7.2	-	611	-	F32A5.7.2	123 (aa)	NP_495514	Q19952

Gene Model

Click here to download WBGene00003078's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00003078's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00003078	lsm-4	63	31.250	WBGene00001808	gut-2	80	31.250

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00003078	lsm-4	67	75.904	ENSG00000130520	LSM4	99	58.824	Homo_sapiens
WBGene00003078	lsm-4	83	66.667	ENSAPOG00000005643	lsm4	55	75.904	Acanthochromis_polyacanthus
WBGene00003078	lsm-4	67	76.829	ENSAMEG00000011162	LSM4	56	76.829	Ailuropoda_melanoleuca
WBGene00003078	lsm-4	83	66.667	ENSAOCG00000006414	lsm4	56	75.904	Amphiprion_ocellaris
WBGene00003078	lsm-4	83	66.667	ENSAPEG00000006238	lsm4	56	75.904	Amphiprion_percula
WBGene00003078	lsm-4	81	68.000	ENSATEG00000016559	lsm4	55	75.904	Anabas_testudineus
WBGene00003078	lsm-4	67	75.904	ENSANAG00000034659	LSM4	60	75.904	Aotus_nancymaae
WBGene00003078	lsm-4	83	66.667	ENSACLG00000022738	lsm4	56	75.904	Astatotilapia_calliptera
WBGene00003078	lsm-4	81	68.000	ENSAMXG00000016932	lsm4	58	75.904	Astyanax_mexicanus
WBGene00003078	lsm-4	67	76.829	ENSBTAG00000008578	LSM4	60	75.904	Bos_taurus
WBGene00003078	lsm-4	67	75.904	ENSCJAG00000014171	LSM4	60	75.904	Callithrix_jacchus
WBGene00003078	lsm-4	67	75.904	ENSCAFG00000014900	LSM4	54	75.904	Canis_familiaris
WBGene00003078	lsm-4	67	75.904	ENSCAFG00020012137	LSM4	60	75.904	Canis_lupus_dingo
WBGene00003078	lsm-4	67	76.829	ENSCHIG00000010928	LSM4	54	76.829	Capra_hircus
WBGene00003078	lsm-4	67	75.610	ENSTSYG00000030906	LSM4	60	74.699	Carlito_syrichta
WBGene00003078	lsm-4	67	75.610	ENSCAPG00000014140	LSM4	60	74.699	Cavia_aperea
WBGene00003078	lsm-4	67	75.610	ENSCPOG00000024117	LSM4	60	74.699	Cavia_porcellus
WBGene00003078	lsm-4	67	75.904	ENSCCAG00000036308	LSM4	60	75.904	Cebus_capucinus
WBGene00003078	lsm-4	67	76.829	ENSCATG00000029311	LSM4	97	59.701	Cercocebus_atys
WBGene00003078	lsm-4	67	75.904	ENSCLAG00000010828	LSM4	60	75.904	Chinchilla_lanigera
WBGene00003078	lsm-4	67	75.904	ENSCSAG00000005370	LSM4	60	75.904	Chlorocebus_sabaeus
WBGene00003078	lsm-4	67	75.904	ENSCPBG00000012925	LSM4	60	75.904	Chrysemys_picta_bellii
WBGene00003078	lsm-4	67	73.171	ENSCING00000007519	-	65	73.171	Ciona_intestinalis
WBGene00003078	lsm-4	67	74.390	ENSCSAVG00000008596	-	66	74.390	Ciona_savignyi
WBGene00003078	lsm-4	67	75.904	ENSCANG00000043686	LSM4	97	60.870	Colobus_angolensis_palliatus
WBGene00003078	lsm-4	67	73.494	ENSCGRG00001014436	Lsm4	60	73.494	Cricetulus_griseus_chok1gshd
WBGene00003078	lsm-4	67	74.390	ENSCGRG00000009398	Lsm4	60	74.390	Cricetulus_griseus_crigri
WBGene00003078	lsm-4	85	64.762	ENSCSEG00000016127	lsm4	58	75.904	Cynoglossus_semilaevis
WBGene00003078	lsm-4	83	66.667	ENSCVAG00000010601	lsm4	58	75.904	Cyprinodon_variegatus
WBGene00003078	lsm-4	71	62.069	ENSCVAG00000021828	lsm4	53	71.014	Cyprinodon_variegatus
WBGene00003078	lsm-4	81	68.000	ENSDARG00000023852	lsm4	58	75.904	Danio_rerio
WBGene00003078	lsm-4	67	75.904	ENSDORG00000024225	Lsm4	60	75.904	Dipodomys_ordii
WBGene00003078	lsm-4	81	67.000	FBgn0032240	CG17768	54	75.904	Drosophila_melanogaster
WBGene00003078	lsm-4	55	72.059	ENSETEG00000007762	-	55	72.059	Echinops_telfairi
WBGene00003078	lsm-4	70	68.605	ENSEBUG00000003639	-	57	68.605	Eptatretus_burgeri
WBGene00003078	lsm-4	80	68.687	ENSELUG00000012821	lsm4	62	76.829	Esox_lucius
WBGene00003078	lsm-4	67	75.904	ENSFCAG00000040580	LSM4	60	75.904	Felis_catus
WBGene00003078	lsm-4	67	76.829	ENSFALG00000009478	LSM4	59	76.829	Ficedula_albicollis
WBGene00003078	lsm-4	67	76.829	ENSFDAG00000010124	LSM4	59	76.829	Fukomys_damarensis
WBGene00003078	lsm-4	80	68.687	ENSGMOG00000007729	lsm4	56	76.829	Gadus_morhua
WBGene00003078	lsm-4	67	75.904	ENSGALG00000003385	LSM4	60	75.904	Gallus_gallus
WBGene00003078	lsm-4	84	66.019	ENSGAFG00000004903	lsm4	52	69.118	Gambusia_affinis
WBGene00003078	lsm-4	81	68.000	ENSGACG00000008140	lsm4	55	75.904	Gasterosteus_aculeatus
WBGene00003078	lsm-4	67	75.904	ENSGAGG00000017812	LSM4	60	75.904	Gopherus_agassizii
WBGene00003078	lsm-4	67	75.904	ENSGGOG00000012914	-	97	59.701	Gorilla_gorilla
WBGene00003078	lsm-4	67	75.904	ENSHGLG00000006568	LSM4	60	75.904	Heterocephalus_glaber_female
WBGene00003078	lsm-4	81	68.000	ENSHGLG00100007894	LSM4	89	75.904	Heterocephalus_glaber_male
WBGene00003078	lsm-4	83	66.667	ENSHCOG00000008819	lsm4	58	75.904	Hippocampus_comes
WBGene00003078	lsm-4	81	68.000	ENSIPUG00000005368	Lsm4	58	75.904	Ictalurus_punctatus
WBGene00003078	lsm-4	67	75.904	ENSSTOG00000016494	LSM4	60	75.904	Ictidomys_tridecemlineatus
WBGene00003078	lsm-4	67	74.390	ENSJJAG00000017420	Lsm4	60	73.494	Jaculus_jaculus
WBGene00003078	lsm-4	67	75.904	ENSKMAG00000005073	lsm4	58	75.904	Kryptolebias_marmoratus
WBGene00003078	lsm-4	83	66.667	ENSLBEG00000027930	lsm4	56	75.904	Labrus_bergylta
WBGene00003078	lsm-4	67	75.904	ENSLACG00000015861	LSM4	59	75.904	Latimeria_chalumnae
WBGene00003078	lsm-4	81	68.000	ENSLOCG00000002025	lsm4	59	75.904	Lepisosteus_oculatus
WBGene00003078	lsm-4	67	76.829	ENSLAFG00000017459	LSM4	59	76.829	Loxodonta_africana
WBGene00003078	lsm-4	67	75.904	ENSMFAG00000031194	LSM4	97	60.870	Macaca_fascicularis
WBGene00003078	lsm-4	67	75.904	ENSMMUG00000004405	LSM4	60	75.904	Macaca_mulatta
WBGene00003078	lsm-4	67	75.904	ENSMNEG00000042899	LSM4	97	60.870	Macaca_nemestrina
WBGene00003078	lsm-4	67	76.829	ENSMLEG00000027948	LSM4	97	59.701	Mandrillus_leucophaeus
WBGene00003078	lsm-4	83	66.667	ENSMAMG00000006190	lsm4	58	75.904	Mastacembelus_armatus
WBGene00003078	lsm-4	83	66.667	ENSMZEG00005016420	lsm4	57	75.904	Maylandia_zebra
WBGene00003078	lsm-4	67	76.829	ENSMGAG00000004976	LSM4	59	76.829	Meleagris_gallopavo
WBGene00003078	lsm-4	81	68.000	ENSMICG00000000222	LSM4	60	75.904	Microcebus_murinus
WBGene00003078	lsm-4	67	73.494	ENSMOCG00000020861	Lsm4	60	73.494	Microtus_ochrogaster
WBGene00003078	lsm-4	55	72.059	ENSMODG00000015044	-	55	72.059	Monodelphis_domestica
WBGene00003078	lsm-4	81	68.000	ENSMALG00000018159	lsm4	58	75.904	Monopterus_albus
WBGene00003078	lsm-4	67	73.494	MGP_CAROLIEiJ_G0031158	Lsm4	60	73.494	Mus_caroli
WBGene00003078	lsm-4	67	73.494	ENSMUSG00000031848	Lsm4	80	68.675	Mus_musculus
WBGene00003078	lsm-4	67	73.494	MGP_PahariEiJ_G0021623	Lsm4	60	73.494	Mus_pahari
WBGene00003078	lsm-4	67	73.494	MGP_SPRETEiJ_G0032276	Lsm4	60	73.494	Mus_spretus
WBGene00003078	lsm-4	67	75.904	ENSMPUG00000015589	LSM4	60	75.904	Mustela_putorius_furo
WBGene00003078	lsm-4	67	76.829	ENSMLUG00000004010	LSM4	59	76.829	Myotis_lucifugus
WBGene00003078	lsm-4	67	73.494	ENSNGAG00000008644	Lsm4	60	73.494	Nannospalax_galili
WBGene00003078	lsm-4	85	65.385	ENSNBRG00000022150	lsm4	52	75.000	Neolamprologus_brichardi
WBGene00003078	lsm-4	55	72.059	ENSMEUG00000013229	LSM4	55	72.059	Notamacropus_eugenii
WBGene00003078	lsm-4	69	63.529	ENSOPRG00000005575	LSM4	57	72.059	Ochotona_princeps
WBGene00003078	lsm-4	67	75.904	ENSODEG00000020549	-	60	75.904	Octodon_degus
WBGene00003078	lsm-4	63	70.513	ENSODEG00000004519	-	58	70.513	Octodon_degus
WBGene00003078	lsm-4	83	66.667	ENSONIG00000012724	lsm4	56	75.904	Oreochromis_niloticus
WBGene00003078	lsm-4	67	72.093	ENSOANG00000007434	LSM4	74	72.093	Ornithorhynchus_anatinus
WBGene00003078	lsm-4	86	60.484	ENSORLG00000008391	lsm4	58	75.904	Oryzias_latipes
WBGene00003078	lsm-4	86	60.484	ENSORLG00020014829	lsm4	58	75.904	Oryzias_latipes_hni
WBGene00003078	lsm-4	86	60.484	ENSORLG00015010205	lsm4	58	75.904	Oryzias_latipes_hsok
WBGene00003078	lsm-4	86	59.677	ENSOMEG00000003606	lsm4	58	74.699	Oryzias_melastigma
WBGene00003078	lsm-4	80	68.687	ENSOGAG00000027992	LSM4	56	76.829	Otolemur_garnettii
WBGene00003078	lsm-4	67	76.829	ENSOARG00000012553	LSM4	57	76.829	Ovis_aries
WBGene00003078	lsm-4	67	75.904	ENSPPAG00000044045	-	60	75.904	Pan_paniscus
WBGene00003078	lsm-4	67	75.904	ENSPPRG00000018264	LSM4	60	75.904	Panthera_pardus
WBGene00003078	lsm-4	67	76.829	ENSPTIG00000006306	LSM4	59	76.829	Panthera_tigris_altaica
WBGene00003078	lsm-4	67	75.904	ENSPTRG00000031470	LSM4	60	75.904	Pan_troglodytes
WBGene00003078	lsm-4	67	76.829	ENSPANG00000014399	LSM4	97	59.701	Papio_anubis
WBGene00003078	lsm-4	81	68.000	ENSPKIG00000006154	lsm4	59	75.904	Paramormyrops_kingsleyae
WBGene00003078	lsm-4	67	76.829	ENSPSIG00000012358	LSM4	60	76.829	Pelodiscus_sinensis
WBGene00003078	lsm-4	67	74.390	ENSPEMG00000001358	Lsm4	60	73.494	Peromyscus_maniculatus_bairdii
WBGene00003078	lsm-4	81	67.619	ENSPLAG00000016267	lsm4	58	75.904	Poecilia_latipinna
WBGene00003078	lsm-4	83	66.667	ENSPMEG00000016378	lsm4	59	76.829	Poecilia_mexicana
WBGene00003078	lsm-4	67	75.904	ENSPPYG00000009736	LSM4	60	75.904	Pongo_abelii
WBGene00003078	lsm-4	55	72.059	ENSPCAG00000008513	LSM4	55	72.059	Procavia_capensis
WBGene00003078	lsm-4	81	68.000	ENSPCOG00000019837	LSM4	60	75.904	Propithecus_coquereli
WBGene00003078	lsm-4	67	75.904	ENSPVAG00000015383	LSM4	60	75.904	Pteropus_vampyrus
WBGene00003078	lsm-4	83	66.667	ENSPNYG00000016794	lsm4	57	75.904	Pundamilia_nyererei
WBGene00003078	lsm-4	80	68.687	ENSPNAG00000016598	lsm4	61	76.829	Pygocentrus_nattereri
WBGene00003078	lsm-4	67	73.494	ENSRNOG00000019572	Lsm4	60	73.494	Rattus_norvegicus
WBGene00003078	lsm-4	67	75.904	ENSRBIG00000024717	LSM4	97	59.420	Rhinopithecus_bieti
WBGene00003078	lsm-4	67	76.829	ENSRROG00000045706	LSM4	97	59.420	Rhinopithecus_roxellana
WBGene00003078	lsm-4	67	35.484	YER112W	LSM4	50	37.234	Saccharomyces_cerevisiae
WBGene00003078	lsm-4	56	72.464	ENSSBOG00000022455	LSM4	55	72.464	Saimiri_boliviensis_boliviensis
WBGene00003078	lsm-4	67	75.904	ENSSHAG00000011559	LSM4	60	75.904	Sarcophilus_harrisii
WBGene00003078	lsm-4	81	68.000	ENSSFOG00015021067	lsm4	59	75.904	Scleropages_formosus
WBGene00003078	lsm-4	82	67.327	ENSSMAG00000021020	lsm4	55	75.904	Scophthalmus_maximus
WBGene00003078	lsm-4	83	66.667	ENSSDUG00000009588	lsm4	50	75.904	Seriola_dumerili
WBGene00003078	lsm-4	67	76.829	ENSSPUG00000010166	LSM4	53	76.829	Sphenodon_punctatus
WBGene00003078	lsm-4	83	66.667	ENSSPAG00000011615	lsm4	55	75.904	Stegastes_partitus
WBGene00003078	lsm-4	67	75.904	ENSSSCG00000034314	LSM4	60	75.904	Sus_scrofa
WBGene00003078	lsm-4	83	65.686	ENSTRUG00000021737	lsm4	58	74.699	Takifugu_rubripes
WBGene00003078	lsm-4	83	66.667	ENSTNIG00000010191	lsm4	58	75.904	Tetraodon_nigroviridis
WBGene00003078	lsm-4	67	76.829	ENSUAMG00000000665	LSM4	69	75.904	Ursus_americanus
WBGene00003078	lsm-4	68	76.190	ENSUMAG00000009013	LSM4	60	76.190	Ursus_maritimus
WBGene00003078	lsm-4	81	68.000	ENSXETG00000024933	lsm4	60	75.904	Xenopus_tropicalis