EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
WBGene00003079 (Gene tree)
Gene ID
-
Gene Symbol
lsm-5
Alias
-
Full Name
LSM Sm-like protein
Gene Type
protein_coding
Species
Caenorhabditis_elegans
Status
putative
Strand
Plus strand
Length
808 bases
Position
chrV:15569935-15570742
Accession
O18694
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
F28F8LSMPF01423.222.1e-2111
F28F8LSMPF01423.222.1e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
F28F8.3.1-457-F28F8.3.191 (aa)NP_506870O18694
F28F8.3.2-717-F28F8.3.291 (aa)NP_506870O18694
Gene Model
Click here to download WBGene00003079's gene model file
Protein-Protein Interaction (PPI)

Clik here to download WBGene00003079's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
WBGene00003079lsm-510073.626ENSG00000106355LSM510079.032Homo_sapiens
WBGene00003079lsm-510072.527ENSAPOG00000020779LSM510072.527Acanthochromis_polyacanthus
WBGene00003079lsm-59070.732ENSAPOG00000011743LSM510077.419Acanthochromis_polyacanthus
WBGene00003079lsm-510073.626ENSAMEG00000006700LSM510073.626Ailuropoda_melanoleuca
WBGene00003079lsm-510072.527ENSAOCG00000001636lsm510072.527Amphiprion_ocellaris
WBGene00003079lsm-510072.527ENSAPEG00000008151lsm510072.527Amphiprion_percula
WBGene00003079lsm-56877.419ENSAPEG00000008201lsm510077.419Amphiprion_percula
WBGene00003079lsm-59070.732ENSATEG00000020470lsm510045.055Anabas_testudineus
WBGene00003079lsm-58177.027ENSAPLG00000008171LSM510077.027Anas_platyrhynchos
WBGene00003079lsm-56273.214ENSACAG00000009530LSM59373.214Anolis_carolinensis
WBGene00003079lsm-510058.242ENSANAG00000037758-10058.242Aotus_nancymaae
WBGene00003079lsm-510073.626ENSANAG00000034409-10073.626Aotus_nancymaae
WBGene00003079lsm-59971.111ENSANAG00000024192-9471.111Aotus_nancymaae
WBGene00003079lsm-59673.563ENSACLG00000012891lsm59973.563Astatotilapia_calliptera
WBGene00003079lsm-510061.702ENSAMXG00000035543lsm510061.702Astyanax_mexicanus
WBGene00003079lsm-55358.333ENSBTAG00000052014-6358.333Bos_taurus
WBGene00003079lsm-510073.626ENSBTAG00000002332LSM510073.626Bos_taurus
WBGene00003079lsm-59962.222ENSCJAG00000005678-10062.222Callithrix_jacchus
WBGene00003079lsm-510073.626ENSCJAG00000047379LSM58165.385Callithrix_jacchus
WBGene00003079lsm-510072.527ENSCAFG00000019261-10072.527Canis_familiaris
WBGene00003079lsm-55566.000ENSCAFG00000030781-5866.000Canis_familiaris
WBGene00003079lsm-510073.626ENSCAFG00020004946LSM510073.626Canis_lupus_dingo
WBGene00003079lsm-58151.351ENSCHIG00000021428-9551.136Capra_hircus
WBGene00003079lsm-510072.527ENSCHIG00000004079-10072.527Capra_hircus
WBGene00003079lsm-510073.626ENSCHIG00000024539LSM510073.626Capra_hircus
WBGene00003079lsm-510060.440ENSTSYG00000026530-9160.440Carlito_syrichta
WBGene00003079lsm-510063.736ENSTSYG00000028728-10063.736Carlito_syrichta
WBGene00003079lsm-510059.341ENSTSYG00000036637-10059.341Carlito_syrichta
WBGene00003079lsm-510073.626ENSTSYG00000006449-10073.626Carlito_syrichta
WBGene00003079lsm-58268.000ENSCAPG00000006980LSM510068.000Cavia_aperea
WBGene00003079lsm-510073.626ENSCPOG00000036386LSM510073.626Cavia_porcellus
WBGene00003079lsm-510072.527ENSCCAG00000000821-10072.527Cebus_capucinus
WBGene00003079lsm-510071.429ENSCCAG00000032123-10071.429Cebus_capucinus
WBGene00003079lsm-510051.648ENSCCAG00000037334-10051.648Cebus_capucinus
WBGene00003079lsm-510060.440ENSCCAG00000032792-10060.440Cebus_capucinus
WBGene00003079lsm-510073.626ENSCCAG00000037808-10073.626Cebus_capucinus
WBGene00003079lsm-59968.889ENSCATG00000014790-10070.690Cercocebus_atys
WBGene00003079lsm-510073.626ENSCATG00000040218LSM510079.032Cercocebus_atys
WBGene00003079lsm-510073.626ENSCLAG00000000202LSM510073.626Chinchilla_lanigera
WBGene00003079lsm-510062.637ENSCLAG00000005062-9062.637Chinchilla_lanigera
WBGene00003079lsm-58270.667ENSCHOG00000005335LSM59970.667Choloepus_hoffmanni
WBGene00003079lsm-510073.626ENSCPBG00000013685LSM510073.626Chrysemys_picta_bellii
WBGene00003079lsm-59773.864ENSCING00000020625-9973.864Ciona_intestinalis
WBGene00003079lsm-59576.744ENSCSAVG00000001439-9876.744Ciona_savignyi
WBGene00003079lsm-510073.626ENSCANG00000039909LSM510079.032Colobus_angolensis_palliatus
WBGene00003079lsm-510073.626ENSCGRG00001015461Lsm510073.626Cricetulus_griseus_chok1gshd
WBGene00003079lsm-58276.000ENSCGRG00000007677Lsm510076.000Cricetulus_griseus_crigri
WBGene00003079lsm-510045.055ENSCSEG00000015286lsm510045.055Cynoglossus_semilaevis
WBGene00003079lsm-510072.527ENSCVAG00000004262lsm510072.527Cyprinodon_variegatus
WBGene00003079lsm-510074.725ENSDARG00000071573lsm510079.032Danio_rerio
WBGene00003079lsm-510073.626ENSDNOG00000034958LSM510073.626Dasypus_novemcinctus
WBGene00003079lsm-59666.667ENSDNOG00000049495-9666.667Dasypus_novemcinctus
WBGene00003079lsm-510073.626ENSDORG00000009422Lsm510073.626Dipodomys_ordii
WBGene00003079lsm-59871.910FBgn0035675CG66109871.910Drosophila_melanogaster
WBGene00003079lsm-510073.626ENSETEG00000018068LSM510073.626Echinops_telfairi
WBGene00003079lsm-59850.562ENSETEG00000000777-9950.562Echinops_telfairi
WBGene00003079lsm-59955.556ENSETEG00000001469-9955.556Echinops_telfairi
WBGene00003079lsm-58160.811ENSETEG00000016074-9860.811Echinops_telfairi
WBGene00003079lsm-59560.465ENSETEG00000010651-9560.465Echinops_telfairi
WBGene00003079lsm-510071.429ENSEBUG00000008540lsm510071.429Eptatretus_burgeri
WBGene00003079lsm-510073.626ENSEASG00005003500LSM510073.626Equus_asinus_asinus
WBGene00003079lsm-510063.736ENSECAG00000018445LSM510063.736Equus_caballus
WBGene00003079lsm-56377.193ENSEEUG00000004102LSM59577.193Erinaceus_europaeus
WBGene00003079lsm-510073.626ENSELUG00000007792lsm510073.626Esox_lucius
WBGene00003079lsm-510073.626ENSFCAG00000000230LSM510073.626Felis_catus
WBGene00003079lsm-58476.316ENSFALG00000001892LSM59276.316Ficedula_albicollis
WBGene00003079lsm-58855.000ENSFDAG00000008685-9555.000Fukomys_damarensis
WBGene00003079lsm-510073.626ENSFDAG00000008767LSM510073.626Fukomys_damarensis
WBGene00003079lsm-510058.242ENSFHEG00000004011lsm59659.551Fundulus_heteroclitus
WBGene00003079lsm-59973.333ENSGMOG00000018235lsm510073.333Gadus_morhua
WBGene00003079lsm-510074.725ENSGALG00000041625LSM510074.725Gallus_gallus
WBGene00003079lsm-56877.419ENSGAFG00000016824lsm510077.419Gambusia_affinis
WBGene00003079lsm-510072.527ENSGACG00000005528lsm510072.527Gasterosteus_aculeatus
WBGene00003079lsm-510073.626ENSGAGG00000015593LSM510073.626Gopherus_agassizii
WBGene00003079lsm-510073.626ENSGGOG00000043469LSM510073.626Gorilla_gorilla
WBGene00003079lsm-59673.563ENSHBUG00000013773lsm59973.563Haplochromis_burtoni
WBGene00003079lsm-510073.626ENSHGLG00000011765LSM510073.626Heterocephalus_glaber_female
WBGene00003079lsm-510070.330ENSHGLG00100015610LSM510070.330Heterocephalus_glaber_male
WBGene00003079lsm-510045.055ENSHCOG00000008288lsm510045.055Hippocampus_comes
WBGene00003079lsm-510072.527ENSIPUG00000021095LSM510072.527Ictalurus_punctatus
WBGene00003079lsm-510073.626ENSSTOG00000012662LSM510073.626Ictidomys_tridecemlineatus
WBGene00003079lsm-58666.667ENSSTOG00000033886-8866.667Ictidomys_tridecemlineatus
WBGene00003079lsm-510072.527ENSJJAG00000012145-10072.527Jaculus_jaculus
WBGene00003079lsm-510057.143ENSJJAG00000016144-9257.143Jaculus_jaculus
WBGene00003079lsm-58768.354ENSJJAG00000004475-10068.354Jaculus_jaculus
WBGene00003079lsm-510072.527ENSKMAG00000021861lsm510072.527Kryptolebias_marmoratus
WBGene00003079lsm-55765.385ENSLBEG00000017379lsm58565.385Labrus_bergylta
WBGene00003079lsm-510065.934ENSLBEG00000009235LSM57065.934Labrus_bergylta
WBGene00003079lsm-510072.527ENSLACG00000022448LSM510072.527Latimeria_chalumnae
WBGene00003079lsm-510073.626ENSLOCG00000012903lsm510073.626Lepisosteus_oculatus
WBGene00003079lsm-510057.143ENSLAFG00000027938-10057.143Loxodonta_africana
WBGene00003079lsm-510073.626ENSLAFG00000029579LSM510073.626Loxodonta_africana
WBGene00003079lsm-510071.429ENSMFAG00000030152-10071.429Macaca_fascicularis
WBGene00003079lsm-510073.626ENSMFAG00000038508LSM510073.626Macaca_fascicularis
WBGene00003079lsm-55370.833ENSMFAG00000031187-8170.833Macaca_fascicularis
WBGene00003079lsm-510071.429ENSMMUG00000030131-10071.429Macaca_mulatta
WBGene00003079lsm-59970.000ENSMMUG00000039822-10070.000Macaca_mulatta
WBGene00003079lsm-55765.385ENSMMUG00000045129-8165.385Macaca_mulatta
WBGene00003079lsm-510073.626ENSMNEG00000015331LSM510079.032Macaca_nemestrina
WBGene00003079lsm-510071.429ENSMNEG00000037935-10071.429Macaca_nemestrina
WBGene00003079lsm-510073.626ENSMLEG00000024945LSM510073.626Mandrillus_leucophaeus
WBGene00003079lsm-59868.539ENSMLEG00000034037-10068.539Mandrillus_leucophaeus
WBGene00003079lsm-510070.330ENSMAMG00000012869lsm510070.330Mastacembelus_armatus
WBGene00003079lsm-59673.563ENSMZEG00005019554lsm59973.563Maylandia_zebra
WBGene00003079lsm-510074.725ENSMGAG00000012117LSM510074.725Meleagris_gallopavo
WBGene00003079lsm-510073.626ENSMAUG00000012222Lsm510073.626Mesocricetus_auratus
WBGene00003079lsm-510072.527ENSMAUG00000008132-10072.527Mesocricetus_auratus
WBGene00003079lsm-59958.889ENSMICG00000033928-9658.889Microcebus_murinus
WBGene00003079lsm-510073.626ENSMICG00000005353LSM510073.626Microcebus_murinus
WBGene00003079lsm-510073.626ENSMOCG00000012018Lsm510073.626Microtus_ochrogaster
WBGene00003079lsm-58475.000ENSMMOG00000004026lsm58775.000Mola_mola
WBGene00003079lsm-56879.032ENSMODG00000013274-10079.032Monodelphis_domestica
WBGene00003079lsm-56874.194ENSMALG00000010343lsm510074.194Monopterus_albus
WBGene00003079lsm-510073.626MGP_CAROLIEiJ_G0028421Lsm510073.626Mus_caroli
WBGene00003079lsm-510073.626ENSMUSG00000091625Lsm510073.626Mus_musculus
WBGene00003079lsm-510073.626MGP_PahariEiJ_G0022171Lsm510073.626Mus_pahari
WBGene00003079lsm-510073.626MGP_SPRETEiJ_G0029423Lsm510073.626Mus_spretus
WBGene00003079lsm-510073.626ENSMLUG00000017028LSM510073.626Myotis_lucifugus
WBGene00003079lsm-510063.441ENSNGAG00000017707-10063.441Nannospalax_galili
WBGene00003079lsm-510073.626ENSNGAG00000024142Lsm510073.626Nannospalax_galili
WBGene00003079lsm-59955.556ENSNGAG00000022569-9655.556Nannospalax_galili
WBGene00003079lsm-56375.439ENSNBRG00000011386lsm57675.439Neolamprologus_brichardi
WBGene00003079lsm-510073.626ENSNLEG00000015268LSM510073.626Nomascus_leucogenys
WBGene00003079lsm-58276.000ENSOPRG00000002443LSM510076.000Ochotona_princeps
WBGene00003079lsm-510073.626ENSODEG00000019072-10073.626Octodon_degus
WBGene00003079lsm-510073.626ENSODEG00000008258-10073.626Octodon_degus
WBGene00003079lsm-58264.000ENSOANG00000014540-10064.000Ornithorhynchus_anatinus
WBGene00003079lsm-510073.626ENSOCUG00000029043LSM510073.626Oryctolagus_cuniculus
WBGene00003079lsm-510071.429ENSORLG00000027725lsm55871.429Oryzias_latipes
WBGene00003079lsm-59668.966ENSORLG00020003019lsm59267.045Oryzias_latipes_hni
WBGene00003079lsm-510071.429ENSORLG00015003338lsm510071.429Oryzias_latipes_hsok
WBGene00003079lsm-510070.330ENSOMEG00000001078lsm510070.330Oryzias_melastigma
WBGene00003079lsm-510073.626ENSOGAG00000013892LSM510073.626Otolemur_garnettii
WBGene00003079lsm-510073.626ENSOARG00000006944LSM510073.626Ovis_aries
WBGene00003079lsm-510073.626ENSPPAG00000003697-10073.626Pan_paniscus
WBGene00003079lsm-510073.626ENSPPRG00000002550LSM510073.626Panthera_pardus
WBGene00003079lsm-510073.626ENSPTIG00000015604LSM510073.626Panthera_tigris_altaica
WBGene00003079lsm-510073.626ENSPTRG00000019057LSM510073.626Pan_troglodytes
WBGene00003079lsm-510062.637ENSPTRG00000049488-10063.736Pan_troglodytes
WBGene00003079lsm-59970.000ENSPANG00000032538-10070.000Papio_anubis
WBGene00003079lsm-510070.330ENSPANG00000033477-10070.330Papio_anubis
WBGene00003079lsm-510073.626ENSPANG00000032179-10073.626Papio_anubis
WBGene00003079lsm-510073.626ENSPKIG00000011910lsm510073.626Paramormyrops_kingsleyae
WBGene00003079lsm-58177.027ENSPSIG00000014796LSM510077.027Pelodiscus_sinensis
WBGene00003079lsm-56877.419ENSPMGG00000011699lsm510077.419Periophthalmus_magnuspinnatus
WBGene00003079lsm-55270.213ENSPEMG00000019994-8070.213Peromyscus_maniculatus_bairdii
WBGene00003079lsm-510050.549ENSPEMG00000022375-10050.549Peromyscus_maniculatus_bairdii
WBGene00003079lsm-510072.527ENSPFOG00000001433lsm510072.527Poecilia_formosa
WBGene00003079lsm-510072.527ENSPLAG00000009665lsm510072.527Poecilia_latipinna
WBGene00003079lsm-510072.527ENSPMEG00000022265lsm510072.527Poecilia_mexicana
WBGene00003079lsm-56877.419ENSPREG00000022452lsm510077.419Poecilia_reticulata
WBGene00003079lsm-510070.330ENSPPYG00000017661LSM510070.330Pongo_abelii
WBGene00003079lsm-58971.605ENSPCAG00000013740LSM510071.605Procavia_capensis
WBGene00003079lsm-510073.626ENSPVAG00000009786LSM510073.626Pteropus_vampyrus
WBGene00003079lsm-59673.563ENSPNYG00000022236lsm59973.563Pundamilia_nyererei
WBGene00003079lsm-510072.527ENSPNAG00000001887lsm510072.527Pygocentrus_nattereri
WBGene00003079lsm-510073.626ENSRNOG00000042126Lsm510073.626Rattus_norvegicus
WBGene00003079lsm-510071.739ENSRNOG00000027305AABR07065089.110071.739Rattus_norvegicus
WBGene00003079lsm-510073.626ENSRBIG00000030714-10073.626Rhinopithecus_bieti
WBGene00003079lsm-510072.527ENSRBIG00000024431-10072.527Rhinopithecus_bieti
WBGene00003079lsm-510073.626ENSRBIG00000027803-10079.032Rhinopithecus_bieti
WBGene00003079lsm-510073.626ENSRBIG00000030340-10073.626Rhinopithecus_bieti
WBGene00003079lsm-510073.626ENSRROG00000004655-10073.626Rhinopithecus_roxellana
WBGene00003079lsm-510073.626ENSRROG00000042782-10079.032Rhinopithecus_roxellana
WBGene00003079lsm-510073.626ENSRROG00000023884-10073.626Rhinopithecus_roxellana
WBGene00003079lsm-58444.444YER146W-8744.444Saccharomyces_cerevisiae
WBGene00003079lsm-510071.429ENSSBOG00000019124-10071.429Saimiri_boliviensis_boliviensis
WBGene00003079lsm-510073.626ENSSBOG00000012312LSM510073.626Saimiri_boliviensis_boliviensis
WBGene00003079lsm-510057.143ENSSBOG00000034794-10057.143Saimiri_boliviensis_boliviensis
WBGene00003079lsm-510073.626ENSSFOG00015010099lsm510073.626Scleropages_formosus
WBGene00003079lsm-510045.055ENSSMAG00000007895lsm510045.055Scophthalmus_maximus
WBGene00003079lsm-56877.419ENSSDUG00000010762lsm510077.419Seriola_dumerili
WBGene00003079lsm-510072.527ENSSLDG00000025242lsm510072.527Seriola_lalandi_dorsalis
WBGene00003079lsm-58572.727ENSSLDG00000008014-9272.727Seriola_lalandi_dorsalis
WBGene00003079lsm-510053.846ENSSARG00000003330LSM510053.846Sorex_araneus
WBGene00003079lsm-510072.527ENSSPUG00000002690LSM510077.419Sphenodon_punctatus
WBGene00003079lsm-510045.055ENSSPAG00000005435lsm510045.055Stegastes_partitus
WBGene00003079lsm-57662.319ENSSSCG00000029661-9662.319Sus_scrofa
WBGene00003079lsm-510073.626ENSSSCG00000026064-10073.626Sus_scrofa
WBGene00003079lsm-510073.626ENSTGUG00000017539LSM510073.626Taeniopygia_guttata
WBGene00003079lsm-58666.265ENSTRUG00000017749lsm56466.265Takifugu_rubripes
WBGene00003079lsm-59673.563ENSTNIG00000008695lsm59973.563Tetraodon_nigroviridis
WBGene00003079lsm-510073.626ENSTBEG00000004876LSM510073.626Tupaia_belangeri
WBGene00003079lsm-510073.626ENSTTRG00000004237LSM510073.626Tursiops_truncatus
WBGene00003079lsm-55765.385ENSUAMG00000009786LSM56865.385Ursus_americanus
WBGene00003079lsm-59974.444ENSUMAG00000002625LSM56574.444Ursus_maritimus
WBGene00003079lsm-510073.626ENSVPAG00000009985LSM510073.626Vicugna_pacos
WBGene00003079lsm-510073.626ENSVVUG00000021311LSM510073.626Vulpes_vulpes
WBGene00003079lsm-59069.512ENSXETG00000026465lsm510069.512Xenopus_tropicalis
WBGene00003079lsm-56877.419ENSXCOG00000015348lsm510077.419Xiphophorus_couchianus
WBGene00003079lsm-510072.527ENSXMAG00000029988lsm510072.527Xiphophorus_maculatus

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