EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00003080 (Gene tree)
Gene ID: -
Gene Symbol: lsm-6
Alias: -
Full Name: LSM Sm-like protein
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 448 bases
Position: chrI:1701361-1701808
Accession: Q95XN6
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y71G12B	LSM	PF01423.22	4.4e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y71G12B.14	-	355	-	Y71G12B.14	77 (aa)	NP_490883	Q95XN6

Gene Model

Click here to download WBGene00003080's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00003080's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00003080	lsm-6	94	47.297	WBGene00004918	snr-5	87	47.297

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00003080	lsm-6	97	81.333	ENSG00000164167	LSM6	94	81.333	Homo_sapiens
WBGene00003080	lsm-6	97	78.667	ENSAPOG00000019832	lsm6	94	78.667	Acanthochromis_polyacanthus
WBGene00003080	lsm-6	97	81.333	ENSAMEG00000016671	LSM6	94	81.333	Ailuropoda_melanoleuca
WBGene00003080	lsm-6	97	78.667	ENSACIG00000016711	lsm6	94	78.667	Amphilophus_citrinellus
WBGene00003080	lsm-6	97	78.667	ENSAPEG00000023992	lsm6	94	78.667	Amphiprion_percula
WBGene00003080	lsm-6	97	78.667	ENSATEG00000012610	lsm6	94	78.667	Anabas_testudineus
WBGene00003080	lsm-6	97	81.333	ENSAPLG00000012594	LSM6	96	81.333	Anas_platyrhynchos
WBGene00003080	lsm-6	97	81.333	ENSACAG00000004004	LSM6	94	81.333	Anolis_carolinensis
WBGene00003080	lsm-6	97	68.000	ENSANAG00000021839	-	93	68.000	Aotus_nancymaae
WBGene00003080	lsm-6	97	81.333	ENSANAG00000030568	-	94	81.333	Aotus_nancymaae
WBGene00003080	lsm-6	97	78.667	ENSACLG00000025621	lsm6	94	78.667	Astatotilapia_calliptera
WBGene00003080	lsm-6	97	78.667	ENSAMXG00000038738	lsm6	94	78.667	Astyanax_mexicanus
WBGene00003080	lsm-6	96	77.027	ENSBTAG00000052085	-	93	77.027	Bos_taurus
WBGene00003080	lsm-6	97	81.333	ENSBTAG00000014060	LSM6	94	81.333	Bos_taurus
WBGene00003080	lsm-6	97	81.333	ENSCJAG00000002482	LSM6	94	81.333	Callithrix_jacchus
WBGene00003080	lsm-6	97	81.333	ENSCAFG00000007738	LSM6	94	81.333	Canis_familiaris
WBGene00003080	lsm-6	97	81.333	ENSCAFG00020025902	LSM6	94	81.333	Canis_lupus_dingo
WBGene00003080	lsm-6	88	83.824	ENSCHIG00000012864	-	96	83.824	Capra_hircus
WBGene00003080	lsm-6	97	66.667	ENSCHIG00000024198	-	88	66.667	Capra_hircus
WBGene00003080	lsm-6	97	81.333	ENSCHIG00000010334	-	94	81.333	Capra_hircus
WBGene00003080	lsm-6	90	78.261	ENSTSYG00000012759	-	91	78.261	Carlito_syrichta
WBGene00003080	lsm-6	97	81.333	ENSTSYG00000026972	LSM6	94	81.333	Carlito_syrichta
WBGene00003080	lsm-6	97	81.333	ENSCAPG00000008104	LSM6	94	81.333	Cavia_aperea
WBGene00003080	lsm-6	81	79.032	ENSCAPG00000011179	-	95	79.032	Cavia_aperea
WBGene00003080	lsm-6	97	81.333	ENSCPOG00000032655	LSM6	94	81.333	Cavia_porcellus
WBGene00003080	lsm-6	97	81.333	ENSCCAG00000036437	LSM6	94	81.333	Cebus_capucinus
WBGene00003080	lsm-6	97	81.333	ENSCCAG00000020665	-	94	81.333	Cebus_capucinus
WBGene00003080	lsm-6	96	59.459	ENSCATG00000038799	-	92	59.459	Cercocebus_atys
WBGene00003080	lsm-6	97	81.333	ENSCATG00000002770	-	94	81.333	Cercocebus_atys
WBGene00003080	lsm-6	97	81.333	ENSCLAG00000005495	LSM6	94	81.333	Chinchilla_lanigera
WBGene00003080	lsm-6	91	66.197	ENSCLAG00000005685	-	100	66.197	Chinchilla_lanigera
WBGene00003080	lsm-6	97	81.333	ENSCSAG00000003421	LSM6	94	81.333	Chlorocebus_sabaeus
WBGene00003080	lsm-6	65	80.000	ENSCHOG00000003420	LSM6	79	80.000	Choloepus_hoffmanni
WBGene00003080	lsm-6	97	81.333	ENSCPBG00000027472	LSM6	79	81.333	Chrysemys_picta_bellii
WBGene00003080	lsm-6	100	81.818	ENSCING00000019152	-	94	81.818	Ciona_intestinalis
WBGene00003080	lsm-6	100	80.519	ENSCSAVG00000002065	-	94	80.519	Ciona_savignyi
WBGene00003080	lsm-6	75	65.517	ENSCANG00000035214	-	76	65.517	Colobus_angolensis_palliatus
WBGene00003080	lsm-6	97	81.333	ENSCANG00000041263	-	94	81.333	Colobus_angolensis_palliatus
WBGene00003080	lsm-6	97	81.333	ENSCANG00000006849	-	94	81.333	Colobus_angolensis_palliatus
WBGene00003080	lsm-6	97	81.333	ENSCGRG00001017142	Lsm6	94	81.333	Cricetulus_griseus_chok1gshd
WBGene00003080	lsm-6	97	81.333	ENSCGRG00000008320	Lsm6	94	81.333	Cricetulus_griseus_crigri
WBGene00003080	lsm-6	97	78.667	ENSCSEG00000000423	lsm6	94	78.667	Cynoglossus_semilaevis
WBGene00003080	lsm-6	97	78.667	ENSCVAG00000001592	lsm6	94	78.667	Cyprinodon_variegatus
WBGene00003080	lsm-6	97	78.667	ENSDARG00000036995	lsm6	94	78.667	Danio_rerio
WBGene00003080	lsm-6	97	76.623	ENSDNOG00000040186	-	83	76.623	Dasypus_novemcinctus
WBGene00003080	lsm-6	97	80.000	ENSDNOG00000044848	-	94	80.000	Dasypus_novemcinctus
WBGene00003080	lsm-6	97	81.333	ENSDORG00000000933	Lsm6	94	81.333	Dipodomys_ordii
WBGene00003080	lsm-6	100	71.429	FBgn0034564	CG9344	97	71.429	Drosophila_melanogaster
WBGene00003080	lsm-6	60	86.957	ENSETEG00000013098	LSM6	96	86.957	Echinops_telfairi
WBGene00003080	lsm-6	97	81.333	ENSEBUG00000017073	lsm6	94	81.333	Eptatretus_burgeri
WBGene00003080	lsm-6	97	74.684	ENSEASG00005001533	LSM6	82	74.684	Equus_asinus_asinus
WBGene00003080	lsm-6	97	81.333	ENSECAG00000021036	LSM6	94	81.333	Equus_caballus
WBGene00003080	lsm-6	60	86.957	ENSEEUG00000002101	LSM6	59	86.957	Erinaceus_europaeus
WBGene00003080	lsm-6	97	78.667	ENSELUG00000014301	LSM6	94	78.667	Esox_lucius
WBGene00003080	lsm-6	97	81.333	ENSFCAG00000003047	LSM6	94	81.333	Felis_catus
WBGene00003080	lsm-6	97	81.333	ENSFALG00000005509	LSM6	86	81.333	Ficedula_albicollis
WBGene00003080	lsm-6	97	81.333	ENSFDAG00000020913	-	94	81.333	Fukomys_damarensis
WBGene00003080	lsm-6	97	73.333	ENSFDAG00000019073	-	94	73.333	Fukomys_damarensis
WBGene00003080	lsm-6	97	78.667	ENSFHEG00000007948	lsm6	94	78.667	Fundulus_heteroclitus
WBGene00003080	lsm-6	97	78.667	ENSGMOG00000015550	lsm6	94	78.667	Gadus_morhua
WBGene00003080	lsm-6	97	81.333	ENSGALG00000009985	LSM6	94	81.333	Gallus_gallus
WBGene00003080	lsm-6	97	78.667	ENSGAFG00000017763	lsm6	94	78.667	Gambusia_affinis
WBGene00003080	lsm-6	97	78.667	ENSGACG00000017223	lsm6	94	78.667	Gasterosteus_aculeatus
WBGene00003080	lsm-6	97	81.333	ENSGAGG00000020980	LSM6	94	81.333	Gopherus_agassizii
WBGene00003080	lsm-6	97	81.333	ENSGGOG00000001310	LSM6	94	81.333	Gorilla_gorilla
WBGene00003080	lsm-6	97	78.667	ENSHBUG00000008618	lsm6	94	78.667	Haplochromis_burtoni
WBGene00003080	lsm-6	97	81.333	ENSHGLG00000000205	LSM6	94	81.333	Heterocephalus_glaber_female
WBGene00003080	lsm-6	97	81.333	ENSHGLG00100014341	LSM6	94	81.333	Heterocephalus_glaber_male
WBGene00003080	lsm-6	97	78.667	ENSHCOG00000005591	lsm6	94	78.667	Hippocampus_comes
WBGene00003080	lsm-6	97	78.667	ENSIPUG00000004508	lsm6	94	78.667	Ictalurus_punctatus
WBGene00003080	lsm-6	97	81.333	ENSSTOG00000002678	LSM6	94	81.333	Ictidomys_tridecemlineatus
WBGene00003080	lsm-6	97	81.333	ENSJJAG00000013845	-	94	81.333	Jaculus_jaculus
WBGene00003080	lsm-6	100	64.935	ENSJJAG00000016942	-	97	64.935	Jaculus_jaculus
WBGene00003080	lsm-6	97	73.333	ENSJJAG00000011211	-	94	73.333	Jaculus_jaculus
WBGene00003080	lsm-6	97	78.667	ENSKMAG00000004105	lsm6	94	78.667	Kryptolebias_marmoratus
WBGene00003080	lsm-6	97	78.667	ENSLBEG00000018441	lsm6	94	78.667	Labrus_bergylta
WBGene00003080	lsm-6	97	81.333	ENSLACG00000006937	LSM6	94	81.333	Latimeria_chalumnae
WBGene00003080	lsm-6	97	77.333	ENSLOCG00000017683	-	94	77.333	Lepisosteus_oculatus
WBGene00003080	lsm-6	97	78.667	ENSLOCG00000008852	lsm6	94	78.667	Lepisosteus_oculatus
WBGene00003080	lsm-6	97	81.333	ENSLAFG00000001952	LSM6	94	81.333	Loxodonta_africana
WBGene00003080	lsm-6	97	81.333	ENSMFAG00000033073	LSM6	94	81.333	Macaca_fascicularis
WBGene00003080	lsm-6	97	58.667	ENSMNEG00000040412	-	93	58.667	Macaca_nemestrina
WBGene00003080	lsm-6	97	81.333	ENSMNEG00000034820	-	94	81.333	Macaca_nemestrina
WBGene00003080	lsm-6	97	81.333	ENSMLEG00000035153	LSM6	94	81.333	Mandrillus_leucophaeus
WBGene00003080	lsm-6	97	78.667	ENSMAMG00000014029	lsm6	94	78.667	Mastacembelus_armatus
WBGene00003080	lsm-6	97	78.667	ENSMZEG00005009146	lsm6	94	78.667	Maylandia_zebra
WBGene00003080	lsm-6	97	81.333	ENSMGAG00000003802	LSM6	94	81.333	Meleagris_gallopavo
WBGene00003080	lsm-6	97	81.333	ENSMAUG00000014938	Lsm6	94	81.333	Mesocricetus_auratus
WBGene00003080	lsm-6	97	81.333	ENSMICG00000042599	LSM6	94	81.333	Microcebus_murinus
WBGene00003080	lsm-6	97	76.000	ENSMICG00000047411	-	88	76.000	Microcebus_murinus
WBGene00003080	lsm-6	97	81.333	ENSMOCG00000020049	Lsm6	94	81.333	Microtus_ochrogaster
WBGene00003080	lsm-6	97	78.667	ENSMMOG00000005470	lsm6	94	78.667	Mola_mola
WBGene00003080	lsm-6	97	72.000	ENSMMOG00000007379	-	95	72.000	Mola_mola
WBGene00003080	lsm-6	97	81.333	ENSMODG00000000526	LSM6	94	81.333	Monodelphis_domestica
WBGene00003080	lsm-6	97	78.667	ENSMALG00000002419	lsm6	94	78.667	Monopterus_albus
WBGene00003080	lsm-6	97	81.333	MGP_CAROLIEiJ_G0031245	Lsm6	94	81.333	Mus_caroli
WBGene00003080	lsm-6	97	81.333	ENSMUSG00000031683	Lsm6	94	81.333	Mus_musculus
WBGene00003080	lsm-6	97	81.333	MGP_PahariEiJ_G0022851	Lsm6	94	81.333	Mus_pahari
WBGene00003080	lsm-6	97	81.333	MGP_SPRETEiJ_G0032365	Lsm6	94	81.333	Mus_spretus
WBGene00003080	lsm-6	97	81.333	ENSMPUG00000006936	LSM6	87	81.333	Mustela_putorius_furo
WBGene00003080	lsm-6	97	81.333	ENSMLUG00000026355	LSM6	94	81.333	Myotis_lucifugus
WBGene00003080	lsm-6	97	81.333	ENSNGAG00000019116	Lsm6	94	81.333	Nannospalax_galili
WBGene00003080	lsm-6	97	78.667	ENSNBRG00000004887	lsm6	94	78.667	Neolamprologus_brichardi
WBGene00003080	lsm-6	97	81.333	ENSNLEG00000005584	LSM6	94	81.333	Nomascus_leucogenys
WBGene00003080	lsm-6	97	80.000	ENSOPRG00000011199	LSM6	94	80.000	Ochotona_princeps
WBGene00003080	lsm-6	94	75.000	ENSODEG00000018684	-	94	75.000	Octodon_degus
WBGene00003080	lsm-6	97	80.000	ENSODEG00000002307	-	94	80.000	Octodon_degus
WBGene00003080	lsm-6	97	80.000	ENSODEG00000019419	-	94	80.000	Octodon_degus
WBGene00003080	lsm-6	97	81.333	ENSODEG00000020420	-	94	81.333	Octodon_degus
WBGene00003080	lsm-6	97	78.667	ENSONIG00000010005	lsm6	94	78.667	Oreochromis_niloticus
WBGene00003080	lsm-6	94	68.056	ENSOANG00000006895	-	92	68.056	Ornithorhynchus_anatinus
WBGene00003080	lsm-6	94	68.056	ENSOANG00000006894	-	92	68.056	Ornithorhynchus_anatinus
WBGene00003080	lsm-6	97	78.667	ENSORLG00000024158	lsm6	94	78.667	Oryzias_latipes
WBGene00003080	lsm-6	97	78.667	ENSORLG00020017383	lsm6	94	78.667	Oryzias_latipes_hni
WBGene00003080	lsm-6	97	78.667	ENSORLG00015016903	lsm6	94	78.667	Oryzias_latipes_hsok
WBGene00003080	lsm-6	97	78.667	ENSOMEG00000000074	lsm6	94	78.667	Oryzias_melastigma
WBGene00003080	lsm-6	97	81.333	ENSOGAG00000026665	-	94	81.333	Otolemur_garnettii
WBGene00003080	lsm-6	97	81.333	ENSOGAG00000033153	-	94	81.333	Otolemur_garnettii
WBGene00003080	lsm-6	97	80.000	ENSOARG00000011641	-	87	80.000	Ovis_aries
WBGene00003080	lsm-6	86	83.333	ENSOARG00000008509	-	85	83.333	Ovis_aries
WBGene00003080	lsm-6	97	81.333	ENSPPAG00000037929	LSM6	94	81.333	Pan_paniscus
WBGene00003080	lsm-6	97	81.333	ENSPPRG00000012806	LSM6	94	81.333	Panthera_pardus
WBGene00003080	lsm-6	97	81.333	ENSPTIG00000019769	LSM6	94	81.333	Panthera_tigris_altaica
WBGene00003080	lsm-6	97	81.333	ENSPTRG00000016488	LSM6	94	81.333	Pan_troglodytes
WBGene00003080	lsm-6	97	81.333	ENSPANG00000006552	LSM6	94	81.333	Papio_anubis
WBGene00003080	lsm-6	97	78.667	ENSPKIG00000016176	lsm6	94	78.667	Paramormyrops_kingsleyae
WBGene00003080	lsm-6	97	81.333	ENSPSIG00000016942	LSM6	94	81.333	Pelodiscus_sinensis
WBGene00003080	lsm-6	97	78.667	ENSPMGG00000018004	lsm6	94	78.667	Periophthalmus_magnuspinnatus
WBGene00003080	lsm-6	97	81.333	ENSPEMG00000012410	Lsm6	94	81.333	Peromyscus_maniculatus_bairdii
WBGene00003080	lsm-6	97	81.333	ENSPMAG00000006949	lsm6	94	81.333	Petromyzon_marinus
WBGene00003080	lsm-6	97	81.333	ENSPCIG00000023469	LSM6	77	83.333	Phascolarctos_cinereus
WBGene00003080	lsm-6	97	78.667	ENSPFOG00000008881	lsm6	94	78.667	Poecilia_formosa
WBGene00003080	lsm-6	97	78.667	ENSPLAG00000003202	lsm6	94	78.667	Poecilia_latipinna
WBGene00003080	lsm-6	97	78.667	ENSPMEG00000004000	lsm6	94	78.667	Poecilia_mexicana
WBGene00003080	lsm-6	97	78.667	ENSPREG00000023235	lsm6	94	78.667	Poecilia_reticulata
WBGene00003080	lsm-6	97	81.333	ENSPPYG00000015105	LSM6	94	81.333	Pongo_abelii
WBGene00003080	lsm-6	97	81.333	ENSPCOG00000013899	LSM6	94	81.333	Propithecus_coquereli
WBGene00003080	lsm-6	97	78.667	ENSPNYG00000012614	lsm6	94	78.667	Pundamilia_nyererei
WBGene00003080	lsm-6	97	78.667	ENSPNAG00000018779	lsm6	94	78.667	Pygocentrus_nattereri
WBGene00003080	lsm-6	97	81.333	ENSRNOG00000049370	LOC100360750	94	81.333	Rattus_norvegicus
WBGene00003080	lsm-6	97	81.333	ENSRNOG00000030374	Lsm6	94	81.333	Rattus_norvegicus
WBGene00003080	lsm-6	97	81.333	ENSRBIG00000027878	LSM6	94	81.333	Rhinopithecus_bieti
WBGene00003080	lsm-6	97	81.333	ENSRROG00000024868	LSM6	94	81.333	Rhinopithecus_roxellana
WBGene00003080	lsm-6	87	46.479	YDR378C	-	83	47.887	Saccharomyces_cerevisiae
WBGene00003080	lsm-6	97	81.333	ENSSBOG00000021229	-	94	81.333	Saimiri_boliviensis_boliviensis
WBGene00003080	lsm-6	96	58.108	ENSSBOG00000028103	-	91	58.108	Saimiri_boliviensis_boliviensis
WBGene00003080	lsm-6	97	78.667	ENSSFOG00015016480	lsm6	94	78.667	Scleropages_formosus
WBGene00003080	lsm-6	97	78.667	ENSSMAG00000004550	lsm6	94	78.667	Scophthalmus_maximus
WBGene00003080	lsm-6	97	78.667	ENSSLDG00000020533	lsm6	78	78.667	Seriola_lalandi_dorsalis
WBGene00003080	lsm-6	86	80.303	ENSSLDG00000004136	-	57	80.303	Seriola_lalandi_dorsalis
WBGene00003080	lsm-6	60	86.957	ENSSARG00000000689	LSM6	96	86.957	Sorex_araneus
WBGene00003080	lsm-6	97	81.333	ENSSPUG00000008657	LSM6	94	81.333	Sphenodon_punctatus
WBGene00003080	lsm-6	97	78.667	ENSSPAG00000003246	lsm6	94	78.667	Stegastes_partitus
WBGene00003080	lsm-6	97	81.333	ENSSSCG00000035973	LSM6	94	81.333	Sus_scrofa
WBGene00003080	lsm-6	97	81.333	ENSTGUG00000002663	LSM6	94	81.333	Taeniopygia_guttata
WBGene00003080	lsm-6	97	78.667	ENSTRUG00000023398	lsm6	94	78.667	Takifugu_rubripes
WBGene00003080	lsm-6	97	78.667	ENSTNIG00000017725	lsm6	94	78.667	Tetraodon_nigroviridis
WBGene00003080	lsm-6	97	81.333	ENSTTRG00000004609	LSM6	94	81.333	Tursiops_truncatus
WBGene00003080	lsm-6	86	83.333	ENSUAMG00000014213	LSM6	54	83.333	Ursus_americanus
WBGene00003080	lsm-6	86	83.333	ENSUMAG00000015727	LSM6	54	83.333	Ursus_maritimus
WBGene00003080	lsm-6	97	81.333	ENSVPAG00000006922	LSM6	94	81.333	Vicugna_pacos
WBGene00003080	lsm-6	97	81.333	ENSVVUG00000009254	LSM6	64	81.333	Vulpes_vulpes
WBGene00003080	lsm-6	97	81.333	ENSXETG00000023683	lsm6	94	81.333	Xenopus_tropicalis
WBGene00003080	lsm-6	97	78.667	ENSXMAG00000009606	lsm6	94	78.667	Xiphophorus_maculatus