EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00003081 (Gene tree)
Gene ID: -
Gene Symbol: lsm-7
Alias: -
Full Name: LSM Sm-like protein
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 699 bases
Position: chrIV:10933502-10934200
Accession: Q23543
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ZK593	LSM	PF01423.22	5.9e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ZK593.7	-	430	NM_069633	ZK593.7	104 (aa)	NP_502034	Q23543

Gene Model

Click here to download WBGene00003081's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00003081's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00003081	lsm-7	71	31.081	WBGene00003082	lsm-8	71	31.081
WBGene00003081	lsm-7	72	36.000	WBGene00004920	snr-7	87	36.000
WBGene00003081	lsm-7	74	36.145	WBGene00003077	lsm-3	81	36.145

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00003081	lsm-7	96	57.000	ENSG00000130332	LSM7	97	57.000	Homo_sapiens
WBGene00003081	lsm-7	87	56.667	ENSAPOG00000015573	lsm7	84	57.143	Acanthochromis_polyacanthus
WBGene00003081	lsm-7	97	56.436	ENSAMEG00000005484	LSM7	98	56.436	Ailuropoda_melanoleuca
WBGene00003081	lsm-7	91	60.000	ENSACIG00000006498	lsm7	75	60.000	Amphilophus_citrinellus
WBGene00003081	lsm-7	88	57.609	ENSAOCG00000001077	lsm7	92	57.426	Amphiprion_ocellaris
WBGene00003081	lsm-7	96	58.000	ENSAPEG00000000694	lsm7	97	58.000	Amphiprion_percula
WBGene00003081	lsm-7	97	57.426	ENSAPEG00000024447	lsm7	92	57.426	Amphiprion_percula
WBGene00003081	lsm-7	96	58.000	ENSATEG00000008557	lsm7	97	58.000	Anabas_testudineus
WBGene00003081	lsm-7	96	57.000	ENSANAG00000037196	-	97	57.000	Aotus_nancymaae
WBGene00003081	lsm-7	96	53.000	ENSANAG00000022222	-	97	53.000	Aotus_nancymaae
WBGene00003081	lsm-7	96	58.000	ENSACLG00000021021	lsm7	97	58.000	Astatotilapia_calliptera
WBGene00003081	lsm-7	96	59.000	ENSAMXG00000037622	lsm7	97	59.000	Astyanax_mexicanus
WBGene00003081	lsm-7	96	57.000	ENSBTAG00000004521	LSM7	97	57.000	Bos_taurus
WBGene00003081	lsm-7	52	66.667	ENSCJAG00000039713	-	66	66.667	Callithrix_jacchus
WBGene00003081	lsm-7	97	56.436	ENSCAFG00000019409	LSM7	98	56.436	Canis_familiaris
WBGene00003081	lsm-7	98	55.882	ENSCAFG00020018168	LSM7	75	55.882	Canis_lupus_dingo
WBGene00003081	lsm-7	97	56.436	ENSCHIG00000023663	LSM7	98	56.436	Capra_hircus
WBGene00003081	lsm-7	67	52.857	ENSCAPG00000014534	LSM7	99	52.857	Cavia_aperea
WBGene00003081	lsm-7	96	57.000	ENSCPOG00000014025	LSM7	99	57.000	Cavia_porcellus
WBGene00003081	lsm-7	96	57.000	ENSCCAG00000035456	LSM7	98	57.000	Cebus_capucinus
WBGene00003081	lsm-7	96	57.000	ENSCATG00000023543	LSM7	97	57.000	Cercocebus_atys
WBGene00003081	lsm-7	96	57.000	ENSCLAG00000011635	LSM7	97	57.000	Chinchilla_lanigera
WBGene00003081	lsm-7	96	57.000	ENSCSAG00000011599	LSM7	97	57.000	Chlorocebus_sabaeus
WBGene00003081	lsm-7	68	54.930	ENSCPBG00000021317	LSM7	76	54.930	Chrysemys_picta_bellii
WBGene00003081	lsm-7	91	60.000	ENSCING00000022134	-	96	60.000	Ciona_intestinalis
WBGene00003081	lsm-7	96	57.000	ENSCANG00000035525	LSM7	97	57.000	Colobus_angolensis_palliatus
WBGene00003081	lsm-7	96	57.000	ENSCGRG00001000807	-	97	57.000	Cricetulus_griseus_chok1gshd
WBGene00003081	lsm-7	81	52.381	ENSCGRG00001016005	-	88	52.381	Cricetulus_griseus_chok1gshd
WBGene00003081	lsm-7	99	56.311	ENSCGRG00000014355	-	99	56.311	Cricetulus_griseus_crigri
WBGene00003081	lsm-7	81	52.381	ENSCGRG00000006821	-	88	52.381	Cricetulus_griseus_crigri
WBGene00003081	lsm-7	96	58.000	ENSCSEG00000014900	lsm7	85	58.000	Cynoglossus_semilaevis
WBGene00003081	lsm-7	98	57.843	ENSCVAG00000021091	lsm7	94	57.843	Cyprinodon_variegatus
WBGene00003081	lsm-7	96	58.000	ENSDARG00000058328	lsm7	97	58.000	Danio_rerio
WBGene00003081	lsm-7	96	58.000	ENSDORG00000024460	Lsm7	98	58.000	Dipodomys_ordii
WBGene00003081	lsm-7	91	60.417	FBgn0261068	LSm7	87	60.417	Drosophila_melanogaster
WBGene00003081	lsm-7	97	54.455	ENSETEG00000012788	LSM7	99	54.455	Echinops_telfairi
WBGene00003081	lsm-7	84	51.724	ENSEBUG00000010470	-	83	51.724	Eptatretus_burgeri
WBGene00003081	lsm-7	97	59.406	ENSEBUG00000016992	lsm7	97	59.406	Eptatretus_burgeri
WBGene00003081	lsm-7	88	56.522	ENSECAG00000001440	LSM7	64	57.000	Equus_caballus
WBGene00003081	lsm-7	96	57.000	ENSFCAG00000003445	LSM7	97	57.000	Felis_catus
WBGene00003081	lsm-7	96	58.000	ENSFALG00000011912	LSM7	99	58.000	Ficedula_albicollis
WBGene00003081	lsm-7	91	57.895	ENSFDAG00000007661	LSM7	99	57.895	Fukomys_damarensis
WBGene00003081	lsm-7	88	57.143	ENSFHEG00000006349	lsm7	91	57.843	Fundulus_heteroclitus
WBGene00003081	lsm-7	97	57.426	ENSGMOG00000013320	lsm7	98	57.426	Gadus_morhua
WBGene00003081	lsm-7	96	58.000	ENSGAFG00000013902	lsm7	97	58.000	Gambusia_affinis
WBGene00003081	lsm-7	97	57.426	ENSGACG00000010390	lsm7	98	57.426	Gasterosteus_aculeatus
WBGene00003081	lsm-7	96	57.000	ENSGGOG00000010172	LSM7	97	57.000	Gorilla_gorilla
WBGene00003081	lsm-7	98	56.863	ENSHBUG00000004616	lsm7	97	58.000	Haplochromis_burtoni
WBGene00003081	lsm-7	96	57.000	ENSHGLG00000010587	LSM7	97	57.000	Heterocephalus_glaber_female
WBGene00003081	lsm-7	96	57.000	ENSHGLG00100000852	LSM7	97	57.000	Heterocephalus_glaber_male
WBGene00003081	lsm-7	96	58.000	ENSHCOG00000020252	lsm7	99	58.000	Hippocampus_comes
WBGene00003081	lsm-7	96	59.000	ENSIPUG00000024724	lsm7	97	59.000	Ictalurus_punctatus
WBGene00003081	lsm-7	97	56.436	ENSSTOG00000028372	LSM7	98	57.000	Ictidomys_tridecemlineatus
WBGene00003081	lsm-7	96	57.000	ENSJJAG00000001936	Lsm7	97	57.000	Jaculus_jaculus
WBGene00003081	lsm-7	96	58.000	ENSKMAG00000022151	lsm7	97	58.000	Kryptolebias_marmoratus
WBGene00003081	lsm-7	96	58.000	ENSLBEG00000005203	lsm7	97	58.000	Labrus_bergylta
WBGene00003081	lsm-7	88	56.522	ENSLACG00000015700	LSM7	98	57.426	Latimeria_chalumnae
WBGene00003081	lsm-7	97	56.436	ENSLOCG00000004356	lsm7	98	56.436	Lepisosteus_oculatus
WBGene00003081	lsm-7	98	56.863	ENSLAFG00000029302	LSM7	99	56.863	Loxodonta_africana
WBGene00003081	lsm-7	96	57.000	ENSMFAG00000044572	LSM7	97	57.000	Macaca_fascicularis
WBGene00003081	lsm-7	96	57.000	ENSMMUG00000000452	LSM7	98	57.000	Macaca_mulatta
WBGene00003081	lsm-7	96	57.000	ENSMNEG00000004393	LSM7	97	57.000	Macaca_nemestrina
WBGene00003081	lsm-7	96	57.000	ENSMLEG00000030852	LSM7	99	57.000	Mandrillus_leucophaeus
WBGene00003081	lsm-7	96	58.000	ENSMAMG00000005410	lsm7	97	58.000	Mastacembelus_armatus
WBGene00003081	lsm-7	96	58.000	ENSMZEG00005028055	lsm7	97	58.000	Maylandia_zebra
WBGene00003081	lsm-7	88	57.609	ENSMGAG00000000750	LSM7	86	58.000	Meleagris_gallopavo
WBGene00003081	lsm-7	97	56.436	ENSMAUG00000009276	Lsm7	98	56.436	Mesocricetus_auratus
WBGene00003081	lsm-7	96	57.000	ENSMICG00000009988	-	97	57.000	Microcebus_murinus
WBGene00003081	lsm-7	96	57.000	ENSMICG00000028619	-	97	57.000	Microcebus_murinus
WBGene00003081	lsm-7	96	57.000	ENSMOCG00000016925	Lsm7	97	57.000	Microtus_ochrogaster
WBGene00003081	lsm-7	96	58.000	ENSMMOG00000019645	lsm7	95	58.000	Mola_mola
WBGene00003081	lsm-7	96	57.000	ENSMODG00000004722	LSM7	97	57.000	Monodelphis_domestica
WBGene00003081	lsm-7	96	58.000	ENSMALG00000014511	lsm7	77	58.000	Monopterus_albus
WBGene00003081	lsm-7	96	57.000	MGP_CAROLIEiJ_G0015607	Lsm7	97	57.000	Mus_caroli
WBGene00003081	lsm-7	96	57.000	ENSMUSG00000035215	Lsm7	97	57.000	Mus_musculus
WBGene00003081	lsm-7	96	57.000	MGP_PahariEiJ_G0031020	Lsm7	97	57.000	Mus_pahari
WBGene00003081	lsm-7	96	57.000	MGP_SPRETEiJ_G0016425	Lsm7	97	57.000	Mus_spretus
WBGene00003081	lsm-7	93	54.639	ENSMLUG00000024002	-	90	54.639	Myotis_lucifugus
WBGene00003081	lsm-7	97	57.426	ENSMLUG00000013097	-	98	57.426	Myotis_lucifugus
WBGene00003081	lsm-7	96	56.000	ENSNGAG00000021637	Lsm7	97	56.000	Nannospalax_galili
WBGene00003081	lsm-7	98	56.863	ENSNBRG00000015770	lsm7	88	56.863	Neolamprologus_brichardi
WBGene00003081	lsm-7	89	58.065	ENSNBRG00000001237	-	80	58.000	Neolamprologus_brichardi
WBGene00003081	lsm-7	96	57.000	ENSNLEG00000002265	LSM7	97	57.000	Nomascus_leucogenys
WBGene00003081	lsm-7	96	57.000	ENSODEG00000013590	-	97	57.000	Octodon_degus
WBGene00003081	lsm-7	96	52.000	ENSODEG00000018769	-	97	52.000	Octodon_degus
WBGene00003081	lsm-7	96	41.000	ENSODEG00000008190	-	97	41.000	Octodon_degus
WBGene00003081	lsm-7	96	58.000	ENSONIG00000001801	lsm7	86	58.000	Oreochromis_niloticus
WBGene00003081	lsm-7	97	57.426	ENSORLG00000023951	lsm7	97	58.000	Oryzias_latipes
WBGene00003081	lsm-7	97	57.426	ENSORLG00020022226	lsm7	97	58.000	Oryzias_latipes_hni
WBGene00003081	lsm-7	99	57.282	ENSORLG00015020044	lsm7	95	57.282	Oryzias_latipes_hsok
WBGene00003081	lsm-7	98	57.843	ENSOMEG00000012806	lsm7	97	58.000	Oryzias_melastigma
WBGene00003081	lsm-7	97	56.436	ENSOGAG00000000144	-	99	56.436	Otolemur_garnettii
WBGene00003081	lsm-7	93	50.515	ENSOGAG00000024373	-	95	50.515	Otolemur_garnettii
WBGene00003081	lsm-7	97	56.436	ENSOARG00000014013	LSM7	98	56.436	Ovis_aries
WBGene00003081	lsm-7	96	57.000	ENSPPAG00000026500	LSM7	97	57.000	Pan_paniscus
WBGene00003081	lsm-7	96	57.000	ENSPPRG00000008624	LSM7	97	57.000	Panthera_pardus
WBGene00003081	lsm-7	88	56.522	ENSPTIG00000016252	LSM7	97	57.000	Panthera_tigris_altaica
WBGene00003081	lsm-7	96	57.000	ENSPTRG00000010233	LSM7	97	57.000	Pan_troglodytes
WBGene00003081	lsm-7	96	57.000	ENSPANG00000020668	LSM7	97	57.000	Papio_anubis
WBGene00003081	lsm-7	98	57.843	ENSPKIG00000011325	lsm7	97	58.000	Paramormyrops_kingsleyae
WBGene00003081	lsm-7	88	57.609	ENSPSIG00000017149	LSM7	88	58.000	Pelodiscus_sinensis
WBGene00003081	lsm-7	96	58.000	ENSPMGG00000006498	lsm7	97	58.000	Periophthalmus_magnuspinnatus
WBGene00003081	lsm-7	96	57.000	ENSPCIG00000030454	LSM7	98	57.000	Phascolarctos_cinereus
WBGene00003081	lsm-7	97	57.426	ENSPFOG00000012467	lsm7	89	57.426	Poecilia_formosa
WBGene00003081	lsm-7	99	57.282	ENSPLAG00000000252	lsm7	95	57.282	Poecilia_latipinna
WBGene00003081	lsm-7	99	57.282	ENSPMEG00000000587	lsm7	95	57.282	Poecilia_mexicana
WBGene00003081	lsm-7	70	52.055	ENSPPYG00000009348	-	50	52.055	Pongo_abelii
WBGene00003081	lsm-7	96	57.000	ENSPCOG00000017177	LSM7	98	57.000	Propithecus_coquereli
WBGene00003081	lsm-7	96	58.000	ENSPNYG00000006938	lsm7	97	58.000	Pundamilia_nyererei
WBGene00003081	lsm-7	96	59.000	ENSPNAG00000010141	lsm7	98	59.000	Pygocentrus_nattereri
WBGene00003081	lsm-7	96	57.000	ENSRNOG00000019552	Lsm7	97	57.000	Rattus_norvegicus
WBGene00003081	lsm-7	96	57.000	ENSRBIG00000035978	LSM7	97	57.000	Rhinopithecus_bieti
WBGene00003081	lsm-7	96	57.000	ENSRROG00000034044	LSM7	97	57.000	Rhinopithecus_roxellana
WBGene00003081	lsm-7	79	44.706	YNL147W	-	74	44.706	Saccharomyces_cerevisiae
WBGene00003081	lsm-7	96	57.000	ENSSBOG00000034899	LSM7	97	57.000	Saimiri_boliviensis_boliviensis
WBGene00003081	lsm-7	96	59.000	ENSSFOG00015006728	lsm7	97	59.000	Scleropages_formosus
WBGene00003081	lsm-7	97	57.426	ENSSMAG00000004195	lsm7	92	58.000	Scophthalmus_maximus
WBGene00003081	lsm-7	96	58.000	ENSSDUG00000001863	lsm7	97	58.000	Seriola_dumerili
WBGene00003081	lsm-7	96	58.000	ENSSLDG00000016339	lsm7	97	58.000	Seriola_lalandi_dorsalis
WBGene00003081	lsm-7	98	56.863	ENSSPAG00000015221	lsm7	97	58.000	Stegastes_partitus
WBGene00003081	lsm-7	96	57.000	ENSSSCG00000013463	LSM7	98	57.000	Sus_scrofa
WBGene00003081	lsm-7	96	58.000	ENSTGUG00000000067	LSM7	99	58.000	Taeniopygia_guttata
WBGene00003081	lsm-7	96	58.000	ENSTRUG00000022913	lsm7	97	58.000	Takifugu_rubripes
WBGene00003081	lsm-7	96	58.000	ENSTNIG00000015525	lsm7	97	58.000	Tetraodon_nigroviridis
WBGene00003081	lsm-7	66	44.928	ENSTBEG00000016602	LSM7	99	44.928	Tupaia_belangeri
WBGene00003081	lsm-7	97	56.436	ENSUAMG00000000912	LSM7	84	56.436	Ursus_americanus
WBGene00003081	lsm-7	88	56.522	ENSUMAG00000006556	LSM7	80	55.882	Ursus_maritimus
WBGene00003081	lsm-7	67	52.857	ENSVVUG00000002640	LSM7	64	52.857	Vulpes_vulpes
WBGene00003081	lsm-7	96	59.000	ENSXETG00000022166	lsm7	99	59.000	Xenopus_tropicalis
WBGene00003081	lsm-7	88	57.609	ENSXCOG00000002572	lsm7	98	58.000	Xiphophorus_couchianus
WBGene00003081	lsm-7	97	57.426	ENSXMAG00000018630	lsm7	97	58.000	Xiphophorus_maculatus