EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00003082 (Gene tree)
Gene ID: -
Gene Symbol: lsm-8
Alias: -
Full Name: LSM Sm-like protein
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 2936 bases
Position: chrIV:6326526-6329461
Accession: Q95XD4
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y73B6BL	LSM	PF01423.22	1.8e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y73B6BL.32	-	560	-	Y73B6BL.32	98 (aa)	NP_500964	Q95XD4

Gene Model

Click here to download WBGene00003082's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00003082's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00003082	lsm-8	77	38.667	WBGene00003076	lsm-1	59	38.667
WBGene00003082	lsm-8	67	34.848	WBGene00004920	snr-7	81	34.848
WBGene00003082	lsm-8	71	31.081	WBGene00003081	lsm-7	71	31.081

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00003082	lsm-8	96	58.511	ENSG00000128534	LSM8	100	59.701	Homo_sapiens
WBGene00003082	lsm-8	96	56.383	ENSAPOG00000008649	lsm8	98	56.383	Acanthochromis_polyacanthus
WBGene00003082	lsm-8	96	58.511	ENSAMEG00000001162	LSM8	98	58.511	Ailuropoda_melanoleuca
WBGene00003082	lsm-8	74	57.534	ENSACIG00000014694	lsm8	97	57.534	Amphilophus_citrinellus
WBGene00003082	lsm-8	96	56.383	ENSAOCG00000013926	lsm8	98	56.383	Amphiprion_ocellaris
WBGene00003082	lsm-8	96	56.383	ENSAPEG00000023502	lsm8	98	56.383	Amphiprion_percula
WBGene00003082	lsm-8	74	57.534	ENSATEG00000023432	lsm8	97	57.534	Anabas_testudineus
WBGene00003082	lsm-8	89	54.444	ENSAPLG00000005115	LSM8	91	54.444	Anas_platyrhynchos
WBGene00003082	lsm-8	96	58.511	ENSANAG00000027771	LSM8	98	58.511	Aotus_nancymaae
WBGene00003082	lsm-8	96	56.383	ENSACLG00000011253	lsm8	98	56.383	Astatotilapia_calliptera
WBGene00003082	lsm-8	96	55.319	ENSAMXG00000042902	lsm8	98	55.319	Astyanax_mexicanus
WBGene00003082	lsm-8	96	58.511	ENSBTAG00000012649	LSM8	98	58.511	Bos_taurus
WBGene00003082	lsm-8	96	58.511	ENSCJAG00000046406	LSM8	98	58.511	Callithrix_jacchus
WBGene00003082	lsm-8	96	58.511	ENSCAFG00000016459	LSM8	95	58.511	Canis_familiaris
WBGene00003082	lsm-8	87	60.000	ENSCAFG00020012800	-	66	60.000	Canis_lupus_dingo
WBGene00003082	lsm-8	96	58.511	ENSCAFG00020007643	-	98	58.511	Canis_lupus_dingo
WBGene00003082	lsm-8	84	58.537	ENSCHIG00000014201	LSM8	87	58.537	Capra_hircus
WBGene00003082	lsm-8	96	58.511	ENSTSYG00000032434	LSM8	98	58.511	Carlito_syrichta
WBGene00003082	lsm-8	73	56.944	ENSCAPG00000008253	LSM8	97	56.944	Cavia_aperea
WBGene00003082	lsm-8	96	58.511	ENSCPOG00000035673	LSM8	98	58.511	Cavia_porcellus
WBGene00003082	lsm-8	96	58.511	ENSCCAG00000021329	LSM8	98	58.511	Cebus_capucinus
WBGene00003082	lsm-8	96	58.511	ENSCATG00000045302	LSM8	98	58.511	Cercocebus_atys
WBGene00003082	lsm-8	96	58.511	ENSCLAG00000003726	LSM8	98	58.511	Chinchilla_lanigera
WBGene00003082	lsm-8	96	58.511	ENSCSAG00000010802	-	98	58.511	Chlorocebus_sabaeus
WBGene00003082	lsm-8	96	58.511	ENSCSAG00000019007	-	98	58.511	Chlorocebus_sabaeus
WBGene00003082	lsm-8	84	58.537	ENSCPBG00000008154	LSM8	84	58.537	Chrysemys_picta_bellii
WBGene00003082	lsm-8	97	55.789	ENSCING00000024877	-	99	55.789	Ciona_intestinalis
WBGene00003082	lsm-8	96	58.511	ENSCANG00000040728	LSM8	98	58.511	Colobus_angolensis_palliatus
WBGene00003082	lsm-8	96	58.511	ENSCGRG00001000450	Lsm8	98	58.511	Cricetulus_griseus_chok1gshd
WBGene00003082	lsm-8	84	58.537	ENSCGRG00000005587	Lsm8	96	58.537	Cricetulus_griseus_crigri
WBGene00003082	lsm-8	96	47.872	ENSCSEG00000004164	lsm8	98	47.872	Cynoglossus_semilaevis
WBGene00003082	lsm-8	96	57.447	ENSCVAG00000020547	lsm8	98	57.447	Cyprinodon_variegatus
WBGene00003082	lsm-8	96	55.319	ENSDARG00000091656	lsm8	98	55.319	Danio_rerio
WBGene00003082	lsm-8	96	58.511	ENSDNOG00000034613	LSM8	98	58.511	Dasypus_novemcinctus
WBGene00003082	lsm-8	96	58.511	ENSDORG00000027868	Lsm8	98	58.511	Dipodomys_ordii
WBGene00003082	lsm-8	94	51.087	FBgn0035271	CG2021	97	51.087	Drosophila_melanogaster
WBGene00003082	lsm-8	96	58.511	ENSETEG00000011594	LSM8	98	58.511	Echinops_telfairi
WBGene00003082	lsm-8	73	56.944	ENSEBUG00000012017	lsm8	97	56.944	Eptatretus_burgeri
WBGene00003082	lsm-8	93	60.440	ENSEASG00005008932	LSM8	59	60.440	Equus_asinus_asinus
WBGene00003082	lsm-8	84	58.537	ENSECAG00000024025	LSM8	75	58.537	Equus_caballus
WBGene00003082	lsm-8	96	57.447	ENSELUG00000010138	lsm8	98	57.447	Esox_lucius
WBGene00003082	lsm-8	96	58.511	ENSFCAG00000036620	-	98	58.511	Felis_catus
WBGene00003082	lsm-8	83	45.679	ENSFCAG00000044794	-	82	45.679	Felis_catus
WBGene00003082	lsm-8	96	58.511	ENSFALG00000010023	LSM8	98	58.511	Ficedula_albicollis
WBGene00003082	lsm-8	96	58.511	ENSFDAG00000019530	LSM8	98	58.511	Fukomys_damarensis
WBGene00003082	lsm-8	96	56.383	ENSFHEG00000013729	lsm8	98	56.383	Fundulus_heteroclitus
WBGene00003082	lsm-8	96	58.511	ENSGALG00000009110	LSM8	98	58.511	Gallus_gallus
WBGene00003082	lsm-8	96	57.447	ENSGAFG00000001135	lsm8	98	57.447	Gambusia_affinis
WBGene00003082	lsm-8	96	58.511	ENSGAGG00000017366	LSM8	98	58.511	Gopherus_agassizii
WBGene00003082	lsm-8	96	58.511	ENSGGOG00000041883	LSM8	98	58.511	Gorilla_gorilla
WBGene00003082	lsm-8	96	56.383	ENSHBUG00000003646	lsm8	98	56.383	Haplochromis_burtoni
WBGene00003082	lsm-8	96	53.191	ENSHGLG00000019782	-	98	53.191	Heterocephalus_glaber_female
WBGene00003082	lsm-8	69	60.294	ENSHGLG00000001988	-	99	60.294	Heterocephalus_glaber_female
WBGene00003082	lsm-8	96	56.383	ENSHGLG00100012166	-	98	56.383	Heterocephalus_glaber_male
WBGene00003082	lsm-8	93	59.341	ENSHGLG00100003934	-	91	59.341	Heterocephalus_glaber_male
WBGene00003082	lsm-8	96	56.383	ENSHCOG00000005037	lsm8	98	56.383	Hippocampus_comes
WBGene00003082	lsm-8	96	55.319	ENSIPUG00000019811	NAA38	98	55.319	Ictalurus_punctatus
WBGene00003082	lsm-8	85	53.012	ENSSTOG00000034801	-	77	53.012	Ictidomys_tridecemlineatus
WBGene00003082	lsm-8	96	58.511	ENSSTOG00000009039	LSM8	98	58.511	Ictidomys_tridecemlineatus
WBGene00003082	lsm-8	96	58.511	ENSJJAG00000009031	Lsm8	97	58.511	Jaculus_jaculus
WBGene00003082	lsm-8	96	56.383	ENSKMAG00000018983	lsm8	98	56.383	Kryptolebias_marmoratus
WBGene00003082	lsm-8	96	58.511	ENSLACG00000010231	LSM8	98	58.511	Latimeria_chalumnae
WBGene00003082	lsm-8	96	56.383	ENSLOCG00000015580	lsm8	98	56.383	Lepisosteus_oculatus
WBGene00003082	lsm-8	96	57.895	ENSLAFG00000011242	LSM8	98	57.895	Loxodonta_africana
WBGene00003082	lsm-8	96	58.511	ENSMFAG00000035798	LSM8	98	58.511	Macaca_fascicularis
WBGene00003082	lsm-8	96	58.511	ENSMFAG00000013044	-	98	58.511	Macaca_fascicularis
WBGene00003082	lsm-8	93	60.440	ENSMMUG00000046401	LSM8	97	55.556	Macaca_mulatta
WBGene00003082	lsm-8	96	58.511	ENSMNEG00000036764	-	98	58.511	Macaca_nemestrina
WBGene00003082	lsm-8	74	57.534	ENSMNEG00000011141	-	97	57.534	Macaca_nemestrina
WBGene00003082	lsm-8	96	58.511	ENSMLEG00000035828	-	98	58.511	Mandrillus_leucophaeus
WBGene00003082	lsm-8	96	54.255	ENSMLEG00000039324	-	98	54.255	Mandrillus_leucophaeus
WBGene00003082	lsm-8	74	57.534	ENSMAMG00000018839	lsm8	97	57.534	Mastacembelus_armatus
WBGene00003082	lsm-8	96	56.383	ENSMZEG00005019138	lsm8	98	56.383	Maylandia_zebra
WBGene00003082	lsm-8	96	58.511	ENSMGAG00000008808	LSM8	98	58.511	Meleagris_gallopavo
WBGene00003082	lsm-8	89	59.770	ENSMAUG00000015721	-	92	59.770	Mesocricetus_auratus
WBGene00003082	lsm-8	80	51.282	ENSMAUG00000020287	-	93	53.623	Mesocricetus_auratus
WBGene00003082	lsm-8	96	50.000	ENSMAUG00000015356	-	98	50.000	Mesocricetus_auratus
WBGene00003082	lsm-8	96	58.511	ENSMICG00000042730	LSM8	98	58.511	Microcebus_murinus
WBGene00003082	lsm-8	96	58.511	ENSMOCG00000001688	Lsm8	98	58.511	Microtus_ochrogaster
WBGene00003082	lsm-8	74	57.534	ENSMMOG00000006046	lsm8	97	57.534	Mola_mola
WBGene00003082	lsm-8	63	61.290	ENSMODG00000015729	LSM8	79	61.290	Monodelphis_domestica
WBGene00003082	lsm-8	96	55.319	ENSMALG00000000405	lsm8	98	55.319	Monopterus_albus
WBGene00003082	lsm-8	96	58.511	MGP_CAROLIEiJ_G0028125	-	98	58.511	Mus_caroli
WBGene00003082	lsm-8	96	58.511	ENSMUSG00000044155	Lsm8	98	58.511	Mus_musculus
WBGene00003082	lsm-8	96	58.511	MGP_PahariEiJ_G0021881	Lsm8	98	58.511	Mus_pahari
WBGene00003082	lsm-8	96	58.511	MGP_SPRETEiJ_G0029125	-	98	58.511	Mus_spretus
WBGene00003082	lsm-8	96	58.511	ENSMLUG00000006837	-	98	58.511	Myotis_lucifugus
WBGene00003082	lsm-8	96	57.447	ENSMLUG00000027762	-	98	57.447	Myotis_lucifugus
WBGene00003082	lsm-8	96	58.511	ENSNGAG00000016554	Lsm8	98	58.511	Nannospalax_galili
WBGene00003082	lsm-8	96	56.383	ENSNBRG00000014441	lsm8	98	56.383	Neolamprologus_brichardi
WBGene00003082	lsm-8	96	58.511	ENSNLEG00000011768	LSM8	98	58.511	Nomascus_leucogenys
WBGene00003082	lsm-8	96	50.000	ENSMEUG00000007801	LSM8	98	50.000	Notamacropus_eugenii
WBGene00003082	lsm-8	84	58.537	ENSOPRG00000014809	LSM8	96	58.537	Ochotona_princeps
WBGene00003082	lsm-8	96	58.511	ENSODEG00000000418	-	98	58.511	Octodon_degus
WBGene00003082	lsm-8	88	55.814	ENSODEG00000020290	-	100	55.814	Octodon_degus
WBGene00003082	lsm-8	96	57.447	ENSOANG00000014536	LSM8	98	57.447	Ornithorhynchus_anatinus
WBGene00003082	lsm-8	96	57.895	ENSOCUG00000017359	LSM8	98	57.895	Oryctolagus_cuniculus
WBGene00003082	lsm-8	96	47.872	ENSORLG00000017432	lsm8	98	47.872	Oryzias_latipes
WBGene00003082	lsm-8	96	47.872	ENSORLG00020004376	lsm8	98	47.872	Oryzias_latipes_hni
WBGene00003082	lsm-8	96	56.383	ENSORLG00015003757	lsm8	98	56.383	Oryzias_latipes_hsok
WBGene00003082	lsm-8	96	47.872	ENSOMEG00000022509	lsm8	98	47.872	Oryzias_melastigma
WBGene00003082	lsm-8	96	58.511	ENSOGAG00000013377	LSM8	98	58.511	Otolemur_garnettii
WBGene00003082	lsm-8	96	58.511	ENSOARG00000017974	LSM8	98	58.511	Ovis_aries
WBGene00003082	lsm-8	74	57.534	ENSPPAG00000043228	-	97	57.534	Pan_paniscus
WBGene00003082	lsm-8	96	58.511	ENSPPRG00000006444	LSM8	98	58.511	Panthera_pardus
WBGene00003082	lsm-8	96	58.511	ENSPTIG00000004722	LSM8	98	58.511	Panthera_tigris_altaica
WBGene00003082	lsm-8	74	57.534	ENSPTRG00000046596	-	97	57.534	Pan_troglodytes
WBGene00003082	lsm-8	96	56.383	ENSPANG00000019395	-	98	56.383	Papio_anubis
WBGene00003082	lsm-8	96	58.511	ENSPANG00000035470	-	98	58.511	Papio_anubis
WBGene00003082	lsm-8	84	59.756	ENSPKIG00000006092	lsm8	83	59.756	Paramormyrops_kingsleyae
WBGene00003082	lsm-8	74	57.534	ENSPSIG00000017054	LSM8	97	57.534	Pelodiscus_sinensis
WBGene00003082	lsm-8	74	57.534	ENSPMGG00000016442	lsm8	97	57.534	Periophthalmus_magnuspinnatus
WBGene00003082	lsm-8	73	55.556	ENSPEMG00000009153	Lsm8	97	55.556	Peromyscus_maniculatus_bairdii
WBGene00003082	lsm-8	93	60.440	ENSPCIG00000021467	LSM8	96	60.440	Phascolarctos_cinereus
WBGene00003082	lsm-8	96	57.447	ENSPFOG00000012340	lsm8	98	57.447	Poecilia_formosa
WBGene00003082	lsm-8	96	55.319	ENSPLAG00000000516	lsm8	98	55.319	Poecilia_latipinna
WBGene00003082	lsm-8	96	57.447	ENSPMEG00000022567	lsm8	98	57.447	Poecilia_mexicana
WBGene00003082	lsm-8	72	51.282	ENSPREG00000005527	lsm8	70	51.282	Poecilia_reticulata
WBGene00003082	lsm-8	96	58.511	ENSPPYG00000017942	LSM8	98	58.511	Pongo_abelii
WBGene00003082	lsm-8	93	41.758	ENSPCOG00000017982	-	94	41.758	Propithecus_coquereli
WBGene00003082	lsm-8	96	58.511	ENSPCOG00000003309	-	98	58.511	Propithecus_coquereli
WBGene00003082	lsm-8	84	58.537	ENSPVAG00000000990	LSM8	96	58.537	Pteropus_vampyrus
WBGene00003082	lsm-8	96	56.383	ENSPNYG00000011448	lsm8	98	56.383	Pundamilia_nyererei
WBGene00003082	lsm-8	96	55.319	ENSPNAG00000010252	lsm8	98	55.319	Pygocentrus_nattereri
WBGene00003082	lsm-8	96	58.511	ENSRNOG00000058677	Lsm8	98	58.511	Rattus_norvegicus
WBGene00003082	lsm-8	96	58.511	ENSRBIG00000032851	LSM8	98	58.511	Rhinopithecus_bieti
WBGene00003082	lsm-8	96	58.511	ENSRROG00000039618	LSM8	98	58.511	Rhinopithecus_roxellana
WBGene00003082	lsm-8	96	58.511	ENSSBOG00000023223	LSM8	98	58.511	Saimiri_boliviensis_boliviensis
WBGene00003082	lsm-8	96	58.511	ENSSHAG00000018435	-	98	58.511	Sarcophilus_harrisii
WBGene00003082	lsm-8	96	56.383	ENSSFOG00015004412	lsm8	98	56.383	Scleropages_formosus
WBGene00003082	lsm-8	74	56.164	ENSSMAG00000009458	lsm8	97	56.164	Scophthalmus_maximus
WBGene00003082	lsm-8	96	56.383	ENSSDUG00000014702	lsm8	98	56.383	Seriola_dumerili
WBGene00003082	lsm-8	74	57.534	ENSSLDG00000016870	lsm8	97	57.534	Seriola_lalandi_dorsalis
WBGene00003082	lsm-8	71	57.143	ENSSARG00000009628	-	97	57.143	Sorex_araneus
WBGene00003082	lsm-8	96	58.511	ENSSPUG00000017419	LSM8	98	58.511	Sphenodon_punctatus
WBGene00003082	lsm-8	96	56.383	ENSSPAG00000021422	lsm8	98	56.383	Stegastes_partitus
WBGene00003082	lsm-8	96	58.511	ENSSSCG00000021652	LSM8	98	58.511	Sus_scrofa
WBGene00003082	lsm-8	96	58.511	ENSTGUG00000004730	-	98	58.511	Taeniopygia_guttata
WBGene00003082	lsm-8	96	58.511	ENSTGUG00000016823	-	98	58.511	Taeniopygia_guttata
WBGene00003082	lsm-8	96	56.383	ENSTRUG00000025192	lsm8	98	56.383	Takifugu_rubripes
WBGene00003082	lsm-8	96	56.383	ENSTNIG00000002864	lsm8	98	56.383	Tetraodon_nigroviridis
WBGene00003082	lsm-8	96	58.511	ENSTTRG00000001023	LSM8	98	58.511	Tursiops_truncatus
WBGene00003082	lsm-8	84	58.537	ENSUAMG00000006943	-	85	58.537	Ursus_americanus
WBGene00003082	lsm-8	84	58.537	ENSUMAG00000003073	LSM8	87	58.537	Ursus_maritimus
WBGene00003082	lsm-8	96	58.511	ENSVPAG00000001530	LSM8	98	58.511	Vicugna_pacos
WBGene00003082	lsm-8	74	57.534	ENSVVUG00000013248	-	80	57.534	Vulpes_vulpes
WBGene00003082	lsm-8	89	57.471	ENSXETG00000021829	lsm8	90	57.471	Xenopus_tropicalis
WBGene00003082	lsm-8	96	55.319	ENSXCOG00000012938	lsm8	98	55.319	Xiphophorus_couchianus
WBGene00003082	lsm-8	96	57.447	ENSXMAG00000025919	lsm8	98	57.447	Xiphophorus_maculatus