EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00003085 (Gene tree)
Gene ID: -
Gene Symbol: ccar-1
Alias: lst-3
Full Name: CCAR1 homolog
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 5241 bases
Position: chrIV:14071503-14076743
Accession: A0A0S4XRD3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y37A1B	S1-like	PF14444.6	1.8e-30	1	1
Y37A1B	S1-like	PF14444.6	1.8e-30	1	1
Y37A1B	S1-like	PF14444.6	2.4e-30	1	1
Y37A1B	S1-like	PF14444.6	1.1e-29	1	1
Y37A1B	SAP	PF02037.27	1.3e-08	1	1
Y37A1B	SAP	PF02037.27	3.1e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y37A1B.1c	-	1982	NM_001268851	Y37A1B.1c	659 (aa)	NP_001255780	H2KMJ3
Y37A1B.1d	-	1914	NM_001318259	Y37A1B.1d	591 (aa)	NP_001305188	A0A0S4XRD3
Y37A1B.1b.1	-	1861	NM_001028264	Y37A1B.1b.1	509 (aa)	NP_001023435	G5EBS4
Y37A1B.1a	-	3833	NM_001318256	Y37A1B.1a	1215 (aa)	NP_001305185	A0A0S4XR43
Y37A1B.1b.2	-	1912	NM_001028264	Y37A1B.1b.2	509 (aa)	NP_001023435	G5EBS4

Gene Model

Click here to download WBGene00003085's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00003085's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00003085	ccar-1	52	44.304	ENSG00000158941	CCAR2	78	32.273	Homo_sapiens
WBGene00003085	ccar-1	50	57.746	ENSAPOG00000019427	ccar1	56	60.274	Acanthochromis_polyacanthus
WBGene00003085	ccar-1	52	44.304	ENSAMEG00000003044	CCAR2	72	44.304	Ailuropoda_melanoleuca
WBGene00003085	ccar-1	50	57.746	ENSAOCG00000004413	ccar1	53	38.235	Amphiprion_ocellaris
WBGene00003085	ccar-1	57	46.154	ENSACAG00000023505	CCAR2	64	46.154	Anolis_carolinensis
WBGene00003085	ccar-1	52	44.304	ENSANAG00000037041	CCAR2	52	44.304	Aotus_nancymaae
WBGene00003085	ccar-1	52	44.304	ENSBTAG00000005469	CCAR2	73	44.304	Bos_taurus
WBGene00003085	ccar-1	52	44.304	ENSCJAG00000020174	CCAR2	52	44.304	Callithrix_jacchus
WBGene00003085	ccar-1	52	44.304	ENSCAFG00000009285	CCAR2	73	44.304	Canis_familiaris
WBGene00003085	ccar-1	52	44.304	ENSCHIG00000007510	CCAR2	52	44.304	Capra_hircus
WBGene00003085	ccar-1	52	44.304	ENSCPOG00000010985	CCAR2	52	44.304	Cavia_porcellus
WBGene00003085	ccar-1	52	44.304	ENSCCAG00000026081	CCAR2	52	44.304	Cebus_capucinus
WBGene00003085	ccar-1	52	44.304	ENSCATG00000031853	CCAR2	74	44.304	Cercocebus_atys
WBGene00003085	ccar-1	52	44.304	ENSCLAG00000014299	CCAR2	52	44.304	Chinchilla_lanigera
WBGene00003085	ccar-1	52	45.455	ENSCPBG00000002266	CCAR2	52	45.205	Chrysemys_picta_bellii
WBGene00003085	ccar-1	54	57.143	ENSCPBG00000019635	CCAR1	50	61.333	Chrysemys_picta_bellii
WBGene00003085	ccar-1	52	44.304	ENSCANG00000003001	CCAR2	74	44.304	Colobus_angolensis_palliatus
WBGene00003085	ccar-1	52	44.304	ENSCGRG00001010031	Ccar2	73	44.304	Cricetulus_griseus_chok1gshd
WBGene00003085	ccar-1	52	44.304	ENSCGRG00000005120	Ccar2	73	44.304	Cricetulus_griseus_crigri
WBGene00003085	ccar-1	58	41.379	ENSDARG00000074759	ccar1	64	48.315	Danio_rerio
WBGene00003085	ccar-1	55	47.619	ENSDARG00000038302	ccar2	76	46.875	Danio_rerio
WBGene00003085	ccar-1	52	44.304	ENSDNOG00000019561	CCAR2	52	44.304	Dasypus_novemcinctus
WBGene00003085	ccar-1	64	52.874	ENSEBUG00000014935	ccar1	50	54.321	Eptatretus_burgeri
WBGene00003085	ccar-1	55	44.304	ENSEASG00005018793	CCAR2	73	44.304	Equus_asinus_asinus
WBGene00003085	ccar-1	50	61.538	ENSEASG00005015474	CCAR1	70	42.667	Equus_asinus_asinus
WBGene00003085	ccar-1	55	44.304	ENSECAG00000020651	CCAR2	69	44.304	Equus_caballus
WBGene00003085	ccar-1	78	39.698	ENSELUG00000022633	ccar1	71	37.447	Esox_lucius
WBGene00003085	ccar-1	52	44.304	ENSFCAG00000005666	CCAR2	73	44.304	Felis_catus
WBGene00003085	ccar-1	76	34.433	ENSFHEG00000002061	ccar1	55	35.391	Fundulus_heteroclitus
WBGene00003085	ccar-1	57	38.938	ENSGAFG00000009459	ccar1	60	38.587	Gambusia_affinis
WBGene00003085	ccar-1	51	67.213	ENSGACG00000007905	ccar1	50	60.274	Gasterosteus_aculeatus
WBGene00003085	ccar-1	52	45.455	ENSGAGG00000012143	-	50	45.205	Gopherus_agassizii
WBGene00003085	ccar-1	52	44.304	ENSGGOG00000002424	CCAR2	54	44.304	Gorilla_gorilla
WBGene00003085	ccar-1	50	50.000	ENSSTOG00000011666	CCAR2	50	49.275	Ictidomys_tridecemlineatus
WBGene00003085	ccar-1	64	65.625	ENSKMAG00000004397	ccar1	58	65.625	Kryptolebias_marmoratus
WBGene00003085	ccar-1	58	45.455	ENSLACG00000011333	CCAR2	65	44.444	Latimeria_chalumnae
WBGene00003085	ccar-1	53	45.455	ENSLOCG00000015653	-	74	45.455	Lepisosteus_oculatus
WBGene00003085	ccar-1	52	44.304	ENSLAFG00000018459	CCAR2	52	44.304	Loxodonta_africana
WBGene00003085	ccar-1	70	58.140	ENSLAFG00000006177	CCAR1	57	67.188	Loxodonta_africana
WBGene00003085	ccar-1	52	44.304	ENSMFAG00000044671	CCAR2	75	44.304	Macaca_fascicularis
WBGene00003085	ccar-1	54	68.852	ENSMMUG00000016652	CCAR1	73	36.343	Macaca_mulatta
WBGene00003085	ccar-1	52	44.304	ENSMNEG00000031023	CCAR2	74	44.304	Macaca_nemestrina
WBGene00003085	ccar-1	52	44.304	ENSMLEG00000037244	CCAR2	74	44.304	Mandrillus_leucophaeus
WBGene00003085	ccar-1	52	44.304	ENSMAUG00000011127	Ccar2	73	44.304	Mesocricetus_auratus
WBGene00003085	ccar-1	52	44.304	ENSMICG00000007751	CCAR2	52	44.304	Microcebus_murinus
WBGene00003085	ccar-1	52	44.304	ENSMOCG00000017002	Ccar2	73	44.304	Microtus_ochrogaster
WBGene00003085	ccar-1	53	47.692	ENSMODG00000009328	CCAR2	53	47.692	Monodelphis_domestica
WBGene00003085	ccar-1	65	35.776	ENSMALG00000018301	ccar1	54	60.274	Monopterus_albus
WBGene00003085	ccar-1	54	37.168	MGP_CAROLIEiJ_G0019474	Ccar2	75	43.038	Mus_caroli
WBGene00003085	ccar-1	54	37.168	ENSMUSG00000033712	Ccar2	75	43.038	Mus_musculus
WBGene00003085	ccar-1	52	43.038	MGP_PahariEiJ_G0030491	Ccar2	75	43.038	Mus_pahari
WBGene00003085	ccar-1	54	37.168	MGP_SPRETEiJ_G0020366	Ccar2	75	43.038	Mus_spretus
WBGene00003085	ccar-1	52	44.304	ENSMPUG00000003486	CCAR2	72	44.304	Mustela_putorius_furo
WBGene00003085	ccar-1	52	44.304	ENSMLUG00000005567	CCAR2	73	44.304	Myotis_lucifugus
WBGene00003085	ccar-1	52	44.304	ENSNLEG00000015683	CCAR2	74	44.304	Nomascus_leucogenys
WBGene00003085	ccar-1	52	44.304	ENSOPRG00000013271	CCAR2	51	44.304	Ochotona_princeps
WBGene00003085	ccar-1	60	30.244	ENSOPRG00000016682	CCAR1	59	63.636	Ochotona_princeps
WBGene00003085	ccar-1	52	44.304	ENSOCUG00000013228	CCAR2	52	44.304	Oryctolagus_cuniculus
WBGene00003085	ccar-1	52	44.304	ENSOGAG00000010578	CCAR2	52	44.304	Otolemur_garnettii
WBGene00003085	ccar-1	52	44.304	ENSPPAG00000041119	CCAR2	54	44.304	Pan_paniscus
WBGene00003085	ccar-1	52	44.304	ENSPPRG00000013075	CCAR2	73	44.304	Panthera_pardus
WBGene00003085	ccar-1	52	44.304	ENSPTIG00000019114	CCAR2	73	44.304	Panthera_tigris_altaica
WBGene00003085	ccar-1	52	44.304	ENSPTRG00000020065	CCAR2	54	44.304	Pan_troglodytes
WBGene00003085	ccar-1	52	44.304	ENSPANG00000018828	CCAR2	74	44.304	Papio_anubis
WBGene00003085	ccar-1	52	44.304	ENSPEMG00000009116	Ccar2	52	44.304	Peromyscus_maniculatus_bairdii
WBGene00003085	ccar-1	51	47.761	ENSPCIG00000004974	CCAR2	51	47.761	Phascolarctos_cinereus
WBGene00003085	ccar-1	57	47.059	ENSPMEG00000003026	ccar1	59	38.587	Poecilia_mexicana
WBGene00003085	ccar-1	80	30.518	ENSPREG00000018399	ccar1	81	34.068	Poecilia_reticulata
WBGene00003085	ccar-1	52	41.772	ENSPPYG00000018426	CCAR2	74	41.772	Pongo_abelii
WBGene00003085	ccar-1	52	44.304	ENSPCOG00000023051	CCAR2	52	44.304	Propithecus_coquereli
WBGene00003085	ccar-1	52	44.304	ENSPVAG00000006188	CCAR2	75	44.304	Pteropus_vampyrus
WBGene00003085	ccar-1	52	43.038	ENSRNOG00000018295	Ccar2	74	43.038	Rattus_norvegicus
WBGene00003085	ccar-1	52	44.304	ENSRBIG00000028654	CCAR2	74	44.304	Rhinopithecus_bieti
WBGene00003085	ccar-1	52	44.304	ENSRROG00000034417	CCAR2	74	44.304	Rhinopithecus_roxellana
WBGene00003085	ccar-1	52	44.304	ENSSBOG00000033571	CCAR2	53	44.304	Saimiri_boliviensis_boliviensis
WBGene00003085	ccar-1	54	57.143	ENSSBOG00000030420	CCAR1	72	36.842	Saimiri_boliviensis_boliviensis
WBGene00003085	ccar-1	73	38.053	ENSSHAG00000018601	CCAR2	73	44.304	Sarcophilus_harrisii
WBGene00003085	ccar-1	65	67.213	ENSSFOG00015002717	ccar1	72	60.274	Scleropages_formosus
WBGene00003085	ccar-1	51	48.485	ENSSPUG00000012349	CCAR2	52	44.872	Sphenodon_punctatus
WBGene00003085	ccar-1	52	44.304	ENSSSCG00000009628	CCAR2	73	44.304	Sus_scrofa
WBGene00003085	ccar-1	52	44.304	ENSUAMG00000024919	CCAR2	72	44.304	Ursus_americanus
WBGene00003085	ccar-1	52	44.304	ENSUMAG00000004780	CCAR2	72	44.304	Ursus_maritimus
WBGene00003085	ccar-1	52	44.304	ENSVVUG00000005152	CCAR2	73	44.304	Vulpes_vulpes