EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00003423 (Gene tree)
Gene ID: -
Gene Symbol: msi-1
Alias: -
Full Name: MuSashI (Fly neural) family%3B Neural RNA-binding protein MSI-1
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Minus strand
Length: 11729 bases
Position: chrIII:3964663-3976391
Accession: G5EFS2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
R10E9	RRM_1	PF00076.22	1.1e-32	1	2
R10E9	RRM_1	PF00076.22	1.1e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
R10E9.1	-	2248	-	R10E9.1	320 (aa)	NP_497799	G5EFS2

Gene Model

Click here to download WBGene00003423's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00003423's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00003423	msi-1	53	42.857	WBGene00019249	H28G03.1	55	42.857
WBGene00003423	msi-1	56	32.778	WBGene00022235	sqd-1	61	32.143
WBGene00003423	msi-1	66	34.211	WBGene00006321	sup-12	96	34.211
WBGene00003423	msi-1	62	37.500	WBGene00001999	hrp-1	82	30.769
WBGene00003423	msi-1	53	30.337	WBGene00008224	C50B8.1	77	30.337

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00003423	msi-1	76	60.643	ENSG00000153944	MSI2	86	71.304	Homo_sapiens
WBGene00003423	msi-1	73	61.638	ENSAPOG00000001658	msi2a	76	59.514	Acanthochromis_polyacanthus
WBGene00003423	msi-1	71	63.158	ENSAMEG00000002697	MSI2	65	63.158	Ailuropoda_melanoleuca
WBGene00003423	msi-1	71	58.929	ENSACIG00000009475	msi2a	53	61.033	Amphilophus_citrinellus
WBGene00003423	msi-1	52	59.200	ENSAOCG00000014822	msi2a	64	59.200	Amphiprion_ocellaris
WBGene00003423	msi-1	76	58.635	ENSAPEG00000007706	msi2a	67	58.635	Amphiprion_percula
WBGene00003423	msi-1	71	61.307	ENSATEG00000003301	-	66	61.307	Anabas_testudineus
WBGene00003423	msi-1	73	61.638	ENSATEG00000010498	msi2a	76	59.514	Anabas_testudineus
WBGene00003423	msi-1	76	60.643	ENSANAG00000037827	MSI2	87	63.158	Aotus_nancymaae
WBGene00003423	msi-1	73	62.069	ENSACLG00000007752	msi2a	76	59.919	Astatotilapia_calliptera
WBGene00003423	msi-1	76	59.839	ENSAMXG00000010474	msi2b	78	60.082	Astyanax_mexicanus
WBGene00003423	msi-1	79	59.127	ENSAMXG00000032796	msi2a	71	59.127	Astyanax_mexicanus
WBGene00003423	msi-1	75	62.083	ENSBTAG00000004406	MSI2	72	61.290	Bos_taurus
WBGene00003423	msi-1	76	60.643	ENSCJAG00000013998	MSI2	87	63.158	Callithrix_jacchus
WBGene00003423	msi-1	73	61.574	ENSCAFG00020025620	MSI2	70	60.177	Canis_lupus_dingo
WBGene00003423	msi-1	75	62.083	ENSCHIG00000016580	MSI2	71	61.290	Capra_hircus
WBGene00003423	msi-1	71	57.635	ENSCPOG00000034042	MSI2	66	57.635	Cavia_porcellus
WBGene00003423	msi-1	76	60.643	ENSCCAG00000033927	MSI2	87	63.158	Cebus_capucinus
WBGene00003423	msi-1	73	63.362	ENSCATG00000040879	MSI2	87	63.158	Cercocebus_atys
WBGene00003423	msi-1	76	60.643	ENSCLAG00000014325	MSI2	87	61.607	Chinchilla_lanigera
WBGene00003423	msi-1	76	60.643	ENSCSAG00000005633	MSI2	71	60.643	Chlorocebus_sabaeus
WBGene00003423	msi-1	54	57.595	ENSCHOG00000008660	MSI2	64	57.595	Choloepus_hoffmanni
WBGene00003423	msi-1	80	57.209	ENSCPBG00000009942	MSI2	87	57.209	Chrysemys_picta_bellii
WBGene00003423	msi-1	58	66.327	ENSCSAVG00000010397	-	62	66.327	Ciona_savignyi
WBGene00003423	msi-1	71	63.158	ENSCANG00000036414	MSI2	87	63.158	Colobus_angolensis_palliatus
WBGene00003423	msi-1	76	60.643	ENSCGRG00001013330	Msi2	79	60.177	Cricetulus_griseus_chok1gshd
WBGene00003423	msi-1	71	63.158	ENSCGRG00000003141	Msi2	66	63.158	Cricetulus_griseus_crigri
WBGene00003423	msi-1	57	45.255	ENSCSEG00000013557	msi2a	61	44.755	Cynoglossus_semilaevis
WBGene00003423	msi-1	57	63.971	ENSCSEG00000013549	msi2a	77	63.971	Cynoglossus_semilaevis
WBGene00003423	msi-1	78	50.806	ENSCSEG00000003266	-	57	64.706	Cynoglossus_semilaevis
WBGene00003423	msi-1	73	61.638	ENSCVAG00000017075	msi2a	76	59.514	Cyprinodon_variegatus
WBGene00003423	msi-1	76	60.643	ENSDARG00000033901	msi2a	60	60.643	Danio_rerio
WBGene00003423	msi-1	67	72.277	ENSDARG00000032614	msi2b	100	78.571	Danio_rerio
WBGene00003423	msi-1	71	61.722	ENSDNOG00000014501	MSI2	67	61.722	Dasypus_novemcinctus
WBGene00003423	msi-1	53	70.796	ENSDORG00000028440	-	100	70.796	Dipodomys_ordii
WBGene00003423	msi-1	60	73.298	FBgn0260943	Rbp6	88	61.644	Drosophila_melanogaster
WBGene00003423	msi-1	68	54.378	ENSEBUG00000006732	msi2a	55	54.378	Eptatretus_burgeri
WBGene00003423	msi-1	71	63.158	ENSEASG00005002965	MSI2	60	63.158	Equus_asinus_asinus
WBGene00003423	msi-1	76	60.643	ENSECAG00000011435	MSI2	74	60.643	Equus_caballus
WBGene00003423	msi-1	63	49.733	ENSEEUG00000007810	MSI2	69	50.267	Erinaceus_europaeus
WBGene00003423	msi-1	73	62.931	ENSELUG00000011747	msi2a	72	62.719	Esox_lucius
WBGene00003423	msi-1	77	59.514	ENSELUG00000001361	msi2b	73	68.908	Esox_lucius
WBGene00003423	msi-1	76	60.643	ENSFCAG00000041686	MSI2	99	57.547	Felis_catus
WBGene00003423	msi-1	53	52.577	ENSFCAG00000033787	-	76	56.944	Felis_catus
WBGene00003423	msi-1	71	63.158	ENSFDAG00000016118	MSI2	66	63.158	Fukomys_damarensis
WBGene00003423	msi-1	68	72.180	ENSFHEG00000000084	msi2a	85	71.642	Fundulus_heteroclitus
WBGene00003423	msi-1	56	64.423	ENSGMOG00000007596	-	100	64.423	Gadus_morhua
WBGene00003423	msi-1	76	61.570	ENSGALG00000005567	MSI2	66	61.570	Gallus_gallus
WBGene00003423	msi-1	68	71.852	ENSGAFG00000006974	msi2a	80	71.642	Gambusia_affinis
WBGene00003423	msi-1	80	58.407	ENSGAGG00000016542	MSI2	65	58.407	Gopherus_agassizii
WBGene00003423	msi-1	71	63.158	ENSGGOG00000013182	MSI2	87	63.158	Gorilla_gorilla
WBGene00003423	msi-1	65	70.940	ENSHBUG00000020800	msi2a	76	59.919	Haplochromis_burtoni
WBGene00003423	msi-1	64	64.762	ENSHGLG00000012444	MSI2	96	64.762	Heterocephalus_glaber_female
WBGene00003423	msi-1	53	71.053	ENSHGLG00100004028	-	87	71.053	Heterocephalus_glaber_male
WBGene00003423	msi-1	76	58.233	ENSHCOG00000000266	msi2a	67	58.233	Hippocampus_comes
WBGene00003423	msi-1	79	53.175	ENSHCOG00000017241	-	56	53.175	Hippocampus_comes
WBGene00003423	msi-1	76	60.494	ENSIPUG00000003732	msi2b	66	60.494	Ictalurus_punctatus
WBGene00003423	msi-1	78	58.366	ENSIPUG00000021097	msi2a	79	58.366	Ictalurus_punctatus
WBGene00003423	msi-1	71	57.635	ENSSTOG00000007884	MSI2	66	57.635	Ictidomys_tridecemlineatus
WBGene00003423	msi-1	53	70.796	ENSJJAG00000009467	-	100	70.796	Jaculus_jaculus
WBGene00003423	msi-1	73	61.638	ENSKMAG00000009494	msi2a	71	58.635	Kryptolebias_marmoratus
WBGene00003423	msi-1	70	70.339	ENSLBEG00000007061	msi2a	87	70.339	Labrus_bergylta
WBGene00003423	msi-1	71	59.091	ENSLBEG00000026223	-	54	59.091	Labrus_bergylta
WBGene00003423	msi-1	53	71.765	ENSLACG00000016798	MSI2	89	71.765	Latimeria_chalumnae
WBGene00003423	msi-1	73	62.500	ENSLOCG00000004675	msi2b	86	64.151	Lepisosteus_oculatus
WBGene00003423	msi-1	71	63.158	ENSMFAG00000003775	MSI2	87	63.158	Macaca_fascicularis
WBGene00003423	msi-1	71	63.158	ENSMMUG00000002069	MSI2	87	63.158	Macaca_mulatta
WBGene00003423	msi-1	76	60.643	ENSMNEG00000045275	MSI2	87	63.158	Macaca_nemestrina
WBGene00003423	msi-1	71	63.158	ENSMLEG00000033888	MSI2	87	63.158	Mandrillus_leucophaeus
WBGene00003423	msi-1	73	61.638	ENSMAMG00000010503	msi2a	82	65.414	Mastacembelus_armatus
WBGene00003423	msi-1	68	73.134	ENSMAMG00000002488	-	88	73.134	Mastacembelus_armatus
WBGene00003423	msi-1	73	62.069	ENSMZEG00005007676	msi2a	76	59.919	Maylandia_zebra
WBGene00003423	msi-1	76	60.643	ENSMAUG00000003862	Msi2	67	60.643	Mesocricetus_auratus
WBGene00003423	msi-1	76	60.643	ENSMICG00000013598	-	87	63.158	Microcebus_murinus
WBGene00003423	msi-1	59	62.176	ENSMICG00000032913	-	63	62.176	Microcebus_murinus
WBGene00003423	msi-1	76	60.643	ENSMOCG00000005820	Msi2	68	60.643	Microtus_ochrogaster
WBGene00003423	msi-1	67	71.552	ENSMMOG00000008348	msi2a	76	71.552	Mola_mola
WBGene00003423	msi-1	73	61.638	ENSMALG00000000071	msi2a	72	67.480	Monopterus_albus
WBGene00003423	msi-1	76	60.643	MGP_CAROLIEiJ_G0016948	Msi2	100	70.796	Mus_caroli
WBGene00003423	msi-1	76	60.643	ENSMUSG00000069769	Msi2	100	70.796	Mus_musculus
WBGene00003423	msi-1	76	60.643	MGP_PahariEiJ_G0018079	Msi2	100	70.796	Mus_pahari
WBGene00003423	msi-1	76	60.643	MGP_SPRETEiJ_G0017795	Msi2	100	70.796	Mus_spretus
WBGene00003423	msi-1	71	63.158	ENSMPUG00000015377	MSI2	68	63.158	Mustela_putorius_furo
WBGene00003423	msi-1	71	63.158	ENSMLUG00000007865	MSI2	68	63.158	Myotis_lucifugus
WBGene00003423	msi-1	76	60.643	ENSNGAG00000017807	Msi2	68	60.643	Nannospalax_galili
WBGene00003423	msi-1	74	71.852	ENSNBRG00000014596	msi2a	90	71.852	Neolamprologus_brichardi
WBGene00003423	msi-1	71	62.150	ENSNLEG00000008059	MSI2	90	62.150	Nomascus_leucogenys
WBGene00003423	msi-1	76	60.643	ENSODEG00000011974	MSI2	68	60.643	Octodon_degus
WBGene00003423	msi-1	68	71.642	ENSONIG00000001972	msi2a	74	71.642	Oreochromis_niloticus
WBGene00003423	msi-1	72	63.043	ENSOANG00000005667	MSI2	51	63.478	Ornithorhynchus_anatinus
WBGene00003423	msi-1	71	63.158	ENSOCUG00000010440	MSI2	68	63.158	Oryctolagus_cuniculus
WBGene00003423	msi-1	73	61.638	ENSORLG00000009671	msi2a	75	59.514	Oryzias_latipes
WBGene00003423	msi-1	73	61.638	ENSORLG00020021556	msi2a	76	59.514	Oryzias_latipes_hni
WBGene00003423	msi-1	73	61.638	ENSORLG00015004592	msi2a	75	59.514	Oryzias_latipes_hsok
WBGene00003423	msi-1	73	61.638	ENSOMEG00000000146	msi2a	76	59.514	Oryzias_melastigma
WBGene00003423	msi-1	71	58.772	ENSOGAG00000005621	MSI2	69	58.772	Otolemur_garnettii
WBGene00003423	msi-1	71	63.158	ENSPPAG00000037697	MSI2	87	63.158	Pan_paniscus
WBGene00003423	msi-1	71	63.158	ENSPPRG00000001848	MSI2	87	63.158	Panthera_pardus
WBGene00003423	msi-1	71	62.150	ENSPTIG00000021678	MSI2	79	62.150	Panthera_tigris_altaica
WBGene00003423	msi-1	70	52.212	ENSPTIG00000021873	-	80	52.212	Panthera_tigris_altaica
WBGene00003423	msi-1	71	63.158	ENSPTRG00000009437	MSI2	87	63.158	Pan_troglodytes
WBGene00003423	msi-1	76	60.643	ENSPANG00000022319	MSI2	87	63.158	Papio_anubis
WBGene00003423	msi-1	77	59.770	ENSPKIG00000007038	-	76	59.398	Paramormyrops_kingsleyae
WBGene00003423	msi-1	76	60.643	ENSPSIG00000008618	MSI2	58	60.643	Pelodiscus_sinensis
WBGene00003423	msi-1	71	60.563	ENSPMGG00000005888	msi2a	63	60.563	Periophthalmus_magnuspinnatus
WBGene00003423	msi-1	53	70.796	ENSPEMG00000021793	-	100	70.796	Peromyscus_maniculatus_bairdii
WBGene00003423	msi-1	76	60.643	ENSPCIG00000006063	MSI2	66	60.643	Phascolarctos_cinereus
WBGene00003423	msi-1	57	72.414	ENSPFOG00000019337	MSI2	84	72.414	Poecilia_formosa
WBGene00003423	msi-1	69	61.538	ENSPLAG00000000436	msi2a	76	61.972	Poecilia_latipinna
WBGene00003423	msi-1	59	66.355	ENSPMEG00000013247	msi2a	66	66.355	Poecilia_mexicana
WBGene00003423	msi-1	73	61.638	ENSPREG00000000881	msi2a	63	60.563	Poecilia_reticulata
WBGene00003423	msi-1	71	52.830	ENSPPYG00000008244	-	60	52.830	Pongo_abelii
WBGene00003423	msi-1	67	73.077	ENSPCOG00000019195	-	93	73.077	Propithecus_coquereli
WBGene00003423	msi-1	54	74.684	ENSPVAG00000017053	MSI2	61	74.684	Pteropus_vampyrus
WBGene00003423	msi-1	73	62.069	ENSPNYG00000018393	msi2a	76	59.919	Pundamilia_nyererei
WBGene00003423	msi-1	79	59.127	ENSPNAG00000014957	msi2a	71	59.127	Pygocentrus_nattereri
WBGene00003423	msi-1	76	59.839	ENSPNAG00000000844	msi2b	63	61.502	Pygocentrus_nattereri
WBGene00003423	msi-1	71	61.809	ENSRNOG00000025338	Msi2	66	61.809	Rattus_norvegicus
WBGene00003423	msi-1	53	71.053	ENSRROG00000034421	-	92	71.053	Rhinopithecus_roxellana
WBGene00003423	msi-1	71	63.158	ENSSBOG00000026425	MSI2	87	63.158	Saimiri_boliviensis_boliviensis
WBGene00003423	msi-1	71	62.996	ENSSHAG00000008672	MSI2	89	47.297	Sarcophilus_harrisii
WBGene00003423	msi-1	76	50.204	ENSSFOG00015012168	msi2b	56	50.204	Scleropages_formosus
WBGene00003423	msi-1	74	61.066	ENSSFOG00015021687	-	77	61.066	Scleropages_formosus
WBGene00003423	msi-1	73	61.638	ENSSMAG00000018484	msi2a	76	59.514	Scophthalmus_maximus
WBGene00003423	msi-1	66	70.940	ENSSDUG00000014507	msi2a	72	70.940	Seriola_dumerili
WBGene00003423	msi-1	68	73.134	ENSSDUG00000021968	-	88	73.134	Seriola_dumerili
WBGene00003423	msi-1	73	61.638	ENSSLDG00000017172	msi2a	75	59.514	Seriola_lalandi_dorsalis
WBGene00003423	msi-1	72	65.823	ENSSPUG00000000913	-	93	65.823	Sphenodon_punctatus
WBGene00003423	msi-1	73	61.638	ENSSPAG00000017793	msi2a	76	59.514	Stegastes_partitus
WBGene00003423	msi-1	79	59.004	ENSSSCG00000038505	MSI2	81	59.004	Sus_scrofa
WBGene00003423	msi-1	73	60.776	ENSTRUG00000021248	msi2a	68	54.733	Takifugu_rubripes
WBGene00003423	msi-1	77	48.988	ENSTBEG00000001241	MSI2	71	48.988	Tupaia_belangeri
WBGene00003423	msi-1	71	59.119	ENSTTRG00000002189	MSI2	61	59.119	Tursiops_truncatus
WBGene00003423	msi-1	74	61.250	ENSUAMG00000000700	MSI2	87	63.158	Ursus_americanus
WBGene00003423	msi-1	74	59.716	ENSUMAG00000000505	MSI2	77	59.716	Ursus_maritimus
WBGene00003423	msi-1	76	60.643	ENSVVUG00000011783	MSI2	68	60.643	Vulpes_vulpes
WBGene00003423	msi-1	73	59.657	ENSXCOG00000006113	msi2a	62	53.712	Xiphophorus_couchianus
WBGene00003423	msi-1	73	61.638	ENSXMAG00000000608	msi2a	76	59.514	Xiphophorus_maculatus