EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00003834 (Gene tree)
Gene ID: -
Gene Symbol: nxf-1
Alias: -
Full Name: Nuclear RNA export factor 1
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Minus strand
Length: 3393 bases
Position: chrV:14412400-14415792
Accession: Q9XVS7
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
C15H11	Tap-RNA_bind	PF09162.10	1e-05	1	1
C15H11	Tap-RNA_bind	PF09162.10	1.1e-05	1	1
C15H11	TAP_C	PF03943.13	3.5e-15	1	1
C15H11	TAP_C	PF03943.13	3.6e-15	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
C15H11.3a	-	2103	NM_001136408	C15H11.3a	628 (aa)	NP_001129880	Q9XVS7
C15H11.3b	-	2053	NM_001136408	C15H11.3b	609 (aa)	NP_001129880	B5BM32

Gene Model

Click here to download WBGene00003834's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00003834's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00003834	nxf-1	67	30.435	ENSEBUG00000013841	nxf1	92	30.435	Eptatretus_burgeri
WBGene00003834	nxf-1	73	30.363	ENSGMOG00000008744	zgc:153681	71	30.091	Gadus_morhua