EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: WBGene00003902 (Gene tree)
Gene ID: -
Gene Symbol: pab-1
Alias: -
Full Name: Polyadenylate-binding protein
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Minus strand
Length: 3068 bases
Position: chrI:10432815-10435882
Accession: Q7K798
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y106G6H	PABP	PF00658.18	3.4e-27	1	1
Y106G6H	PABP	PF00658.18	3.4e-27	1	1
Y106G6H	PABP	PF00658.18	4.4e-27	1	1
Y106G6H	PABP	PF00658.18	4.4e-27	1	1
Y106G6H	PABP	PF00658.18	4.4e-27	1	1
Y106G6H	PABP	PF00658.18	4.4e-27	1	1
Y106G6H	PABP	PF00658.18	4.4e-27	1	1
Y106G6H	PABP	PF00658.18	1.5e-26	1	1
Y106G6H	PABP	PF00658.18	1.5e-26	1	1
Y106G6H	PABP	PF00658.18	1.5e-26	1	1
Y106G6H	PABP	PF00658.18	1.5e-26	1	1
Y106G6H	RRM_5	PF13893.6	4e-14	1	2
Y106G6H	RRM_5	PF13893.6	4e-14	2	2
Y106G6H	RRM_5	PF13893.6	4e-14	1	2
Y106G6H	RRM_5	PF13893.6	4e-14	2	2
Y106G6H	RRM_5	PF13893.6	4e-14	1	2
Y106G6H	RRM_5	PF13893.6	4e-14	2	2
Y106G6H	RRM_5	PF13893.6	4e-14	1	2
Y106G6H	RRM_5	PF13893.6	4e-14	2	2
Y106G6H	RRM_5	PF13893.6	4e-14	1	2
Y106G6H	RRM_5	PF13893.6	4e-14	2	2
Y106G6H	RRM_5	PF13893.6	1.9e-11	1	1
Y106G6H	RRM_5	PF13893.6	1.9e-11	1	1
Y106G6H	RRM_5	PF13893.6	3.1e-11	1	2
Y106G6H	RRM_5	PF13893.6	3.1e-11	2	2
Y106G6H	RRM_5	PF13893.6	3.1e-11	1	2
Y106G6H	RRM_5	PF13893.6	3.1e-11	2	2
Y106G6H	RRM_5	PF13893.6	3.1e-11	1	2
Y106G6H	RRM_5	PF13893.6	3.1e-11	2	2
Y106G6H	RRM_5	PF13893.6	3.1e-11	1	2
Y106G6H	RRM_5	PF13893.6	3.1e-11	2	2
Y106G6H	RRM_1	PF00076.22	2.2e-80	1	4
Y106G6H	RRM_1	PF00076.22	2.2e-80	2	4
Y106G6H	RRM_1	PF00076.22	2.2e-80	3	4
Y106G6H	RRM_1	PF00076.22	2.2e-80	4	4
Y106G6H	RRM_1	PF00076.22	2.2e-80	1	4
Y106G6H	RRM_1	PF00076.22	2.2e-80	2	4
Y106G6H	RRM_1	PF00076.22	2.2e-80	3	4
Y106G6H	RRM_1	PF00076.22	2.2e-80	4	4
Y106G6H	RRM_1	PF00076.22	2.2e-80	1	4
Y106G6H	RRM_1	PF00076.22	2.2e-80	2	4
Y106G6H	RRM_1	PF00076.22	2.2e-80	3	4
Y106G6H	RRM_1	PF00076.22	2.2e-80	4	4
Y106G6H	RRM_1	PF00076.22	2.2e-80	1	4
Y106G6H	RRM_1	PF00076.22	2.2e-80	2	4
Y106G6H	RRM_1	PF00076.22	2.2e-80	3	4
Y106G6H	RRM_1	PF00076.22	2.2e-80	4	4
Y106G6H	RRM_1	PF00076.22	2.2e-80	1	4
Y106G6H	RRM_1	PF00076.22	2.2e-80	2	4
Y106G6H	RRM_1	PF00076.22	2.2e-80	3	4
Y106G6H	RRM_1	PF00076.22	2.2e-80	4	4
Y106G6H	RRM_1	PF00076.22	5.4e-62	1	3
Y106G6H	RRM_1	PF00076.22	5.4e-62	2	3
Y106G6H	RRM_1	PF00076.22	5.4e-62	3	3
Y106G6H	RRM_1	PF00076.22	5.4e-62	1	3
Y106G6H	RRM_1	PF00076.22	5.4e-62	2	3
Y106G6H	RRM_1	PF00076.22	5.4e-62	3	3
Y106G6H	RRM_1	PF00076.22	1.3e-60	1	3
Y106G6H	RRM_1	PF00076.22	1.3e-60	2	3
Y106G6H	RRM_1	PF00076.22	1.3e-60	3	3
Y106G6H	RRM_1	PF00076.22	1.3e-60	1	3
Y106G6H	RRM_1	PF00076.22	1.3e-60	2	3
Y106G6H	RRM_1	PF00076.22	1.3e-60	3	3
Y106G6H	RRM_1	PF00076.22	1.3e-60	1	3
Y106G6H	RRM_1	PF00076.22	1.3e-60	2	3
Y106G6H	RRM_1	PF00076.22	1.3e-60	3	3
Y106G6H	RRM_1	PF00076.22	1.3e-60	1	3
Y106G6H	RRM_1	PF00076.22	1.3e-60	2	3
Y106G6H	RRM_1	PF00076.22	1.3e-60	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y106G6H.2a.4	-	2381	NM_001026538	Y106G6H.2a.4	646 (aa)	NP_001021709	Q17350
Y106G6H.2a.5	-	2177	NM_001026538	Y106G6H.2a.5	646 (aa)	NP_001021709	Q17350
Y106G6H.2a.1	-	2386	NM_001026538	Y106G6H.2a.1	646 (aa)	NP_001021709	Q17350
Y106G6H.2a.2	-	2306	NM_001026538	Y106G6H.2a.2	646 (aa)	NP_001021709	Q17350
Y106G6H.2a.3	-	2270	NM_001026538	Y106G6H.2a.3	646 (aa)	NP_001021709	Q17350
Y106G6H.2c.4	-	2201	NM_001026540	Y106G6H.2c.4	586 (aa)	NP_001021711	Q7K797
Y106G6H.2c.2	-	2126	NM_001026540	Y106G6H.2c.2	586 (aa)	NP_001021711	Q7K797
Y106G6H.2c.3	-	2090	NM_001026540	Y106G6H.2c.3	586 (aa)	NP_001021711	Q7K797
Y106G6H.2c.1	-	2200	NM_001026540	Y106G6H.2c.1	586 (aa)	NP_001021711	Q7K797
Y106G6H.2b.2	-	2192	NM_001026539	Y106G6H.2b.2	583 (aa)	NP_001021710	Q7K798
Y106G6H.2b.1	-	2136	NM_001026539	Y106G6H.2b.1	583 (aa)	NP_001021710	Q7K798

Gene Model

Click here to download WBGene00003902's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00003902's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00003902	pab-1	95	64.031	WBGene00003903	pab-2	98	62.674
WBGene00003902	pab-1	61	40.476	WBGene00001340	etr-1	50	40.476
WBGene00003902	pab-1	59	36.232	WBGene00001368	exc-7	55	36.620
WBGene00003902	pab-1	59	35.897	WBGene00015943	tiar-1	97	30.108
WBGene00003902	pab-1	54	40.299	WBGene00006331	sup-26	63	37.975