EuRBPDB

Description

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
F18H3	PABP	PF00658.18	4.2e-26	1	1
F18H3	PABP	PF00658.18	6e-26	1	1
F18H3	PABP	PF00658.18	6e-26	1	1
F18H3	PABP	PF00658.18	6e-26	1	1
F18H3	PABP	PF00658.18	6e-26	1	1
F18H3	RRM_5	PF13893.6	1.1e-09	1	2
F18H3	RRM_5	PF13893.6	1.1e-09	2	2
F18H3	RRM_5	PF13893.6	1.1e-09	1	2
F18H3	RRM_5	PF13893.6	1.1e-09	2	2
F18H3	RRM_5	PF13893.6	1.1e-09	1	2
F18H3	RRM_5	PF13893.6	1.1e-09	2	2
F18H3	RRM_5	PF13893.6	1.1e-09	1	2
F18H3	RRM_5	PF13893.6	1.1e-09	2	2
F18H3	RRM_5	PF13893.6	2.7e-06	1	2
F18H3	RRM_5	PF13893.6	2.7e-06	2	2
F18H3	RRM_1	PF00076.22	3.3e-80	1	4
F18H3	RRM_1	PF00076.22	3.3e-80	2	4
F18H3	RRM_1	PF00076.22	3.3e-80	3	4
F18H3	RRM_1	PF00076.22	3.3e-80	4	4
F18H3	RRM_1	PF00076.22	3.3e-80	1	4
F18H3	RRM_1	PF00076.22	3.3e-80	2	4
F18H3	RRM_1	PF00076.22	3.3e-80	3	4
F18H3	RRM_1	PF00076.22	3.3e-80	4	4
F18H3	RRM_1	PF00076.22	3.3e-80	1	4
F18H3	RRM_1	PF00076.22	3.3e-80	2	4
F18H3	RRM_1	PF00076.22	3.3e-80	3	4
F18H3	RRM_1	PF00076.22	3.3e-80	4	4
F18H3	RRM_1	PF00076.22	3.3e-80	1	4
F18H3	RRM_1	PF00076.22	3.3e-80	2	4
F18H3	RRM_1	PF00076.22	3.3e-80	3	4
F18H3	RRM_1	PF00076.22	3.3e-80	4	4
F18H3	RRM_1	PF00076.22	1.2e-60	1	3
F18H3	RRM_1	PF00076.22	1.2e-60	2	3
F18H3	RRM_1	PF00076.22	1.2e-60	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
F18H3.3a.1	-	3296	-	F18H3.3a.1	692 (aa)	-	Q19579
F18H3.3a.2	-	2594	NM_077859	F18H3.3a.2	692 (aa)	NP_510260	Q19579
F18H3.3a.3	-	2583	NM_077859	F18H3.3a.3	692 (aa)	NP_510260	Q19579
F18H3.3a.4	-	2439	NM_077858	F18H3.3a.4	692 (aa)	NP_510259	Q19579
F18H3.3b	-	2147	NM_077858	F18H3.3b	575 (aa)	NP_510259	Q19581

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00003903	pab-2	63	36.275	WBGene00004723	sap-49	75	35.583
WBGene00003903	pab-2	98	62.674	WBGene00003902	pab-1	95	64.031
WBGene00003903	pab-2	52	42.857	WBGene00001340	etr-1	53	42.857
WBGene00003903	pab-2	53	32.222	WBGene00015943	tiar-1	96	32.222
WBGene00003903	pab-2	54	37.805	WBGene00006331	sup-26	85	37.805
WBGene00003903	pab-2	54	36.905	WBGene00004389	rnp-6	76	38.889

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00003903	pab-2	55	64.706	ENSCING00000024279	-	97	64.706	Ciona_intestinalis
WBGene00003903	pab-2	97	49.664	FBgn0265297	pAbp	98	49.321	Drosophila_melanogaster
WBGene00003903	pab-2	54	48.947	FBgn0035016	CG4612	65	48.705	Drosophila_melanogaster
WBGene00003903	pab-2	96	41.802	YER165W	-	79	48.113	Saccharomyces_cerevisiae