EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00003904 (Gene tree)
Gene ID: -
Gene Symbol: pabp-2
Alias: -
Full Name: PolyA Binding Protein (Nuclear)
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Minus strand
Length: 1086 bases
Position: chrI:9420907-9421992
Accession: Q93233
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
C17E4	RRM_1	PF00076.22	4.5e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
C17E4.5	-	984	-	C17E4.5	205 (aa)	NP_492504	Q93233

Gene Model

Click here to download WBGene00003904's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00003904's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00003904	pabp-2	76	41.667	WBGene00017135	EEED8.4	82	41.718
WBGene00003904	pabp-2	76	41.071	WBGene00017140	EEED8.12	79	41.104
WBGene00003904	pabp-2	67	45.890	WBGene00020354	T08B6.5	71	46.825

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00003904	pabp-2	91	53.886	ENSG00000100836	PABPN1	78	62.879	Homo_sapiens
WBGene00003904	pabp-2	86	55.000	ENSAPOG00000016425	pabpn1	62	58.904	Acanthochromis_polyacanthus
WBGene00003904	pabp-2	89	54.211	ENSAMEG00000007048	BCL2L2-PABPN1	75	60.839	Ailuropoda_melanoleuca
WBGene00003904	pabp-2	83	49.462	ENSACIG00000021744	pabpn1	73	61.364	Amphilophus_citrinellus
WBGene00003904	pabp-2	84	53.409	ENSAOCG00000015805	pabpn1	62	58.904	Amphiprion_ocellaris
WBGene00003904	pabp-2	84	53.409	ENSAPEG00000009623	pabpn1	62	58.904	Amphiprion_percula
WBGene00003904	pabp-2	75	57.595	ENSATEG00000020531	pabpn1	62	58.904	Anabas_testudineus
WBGene00003904	pabp-2	83	55.814	ENSACAG00000006185	-	50	59.441	Anolis_carolinensis
WBGene00003904	pabp-2	91	53.886	ENSANAG00000024513	-	52	60.274	Aotus_nancymaae
WBGene00003904	pabp-2	86	55.556	ENSAMXG00000000452	pabpn1	73	62.121	Astyanax_mexicanus
WBGene00003904	pabp-2	71	60.959	ENSBTAG00000050594	-	65	55.422	Bos_taurus
WBGene00003904	pabp-2	91	54.124	ENSBTAG00000053753	-	54	60.544	Bos_taurus
WBGene00003904	pabp-2	91	53.886	ENSCJAG00000007960	-	54	60.274	Callithrix_jacchus
WBGene00003904	pabp-2	79	54.167	ENSCJAG00000004407	-	66	61.364	Callithrix_jacchus
WBGene00003904	pabp-2	89	54.211	ENSTSYG00000033996	BCL2L2-PABPN1	74	62.879	Carlito_syrichta
WBGene00003904	pabp-2	64	61.481	ENSCAPG00000009461	-	69	73.958	Cavia_aperea
WBGene00003904	pabp-2	91	53.886	ENSCCAG00000033954	BCL2L2-PABPN1	54	60.274	Cebus_capucinus
WBGene00003904	pabp-2	91	53.886	ENSCATG00000038536	BCL2L2-PABPN1	54	60.274	Cercocebus_atys
WBGene00003904	pabp-2	99	47.143	ENSCHOG00000004798	BCL2L2-PABPN1	66	50.920	Choloepus_hoffmanni
WBGene00003904	pabp-2	79	55.357	ENSCPBG00000026060	-	74	61.364	Chrysemys_picta_bellii
WBGene00003904	pabp-2	77	52.830	ENSCING00000012468	-	70	52.500	Ciona_intestinalis
WBGene00003904	pabp-2	84	51.724	ENSCSAVG00000002001	-	78	57.576	Ciona_savignyi
WBGene00003904	pabp-2	89	54.211	ENSCANG00000009750	BCL2L2-PABPN1	74	62.879	Colobus_angolensis_palliatus
WBGene00003904	pabp-2	91	50.259	ENSCANG00000030980	-	51	53.425	Colobus_angolensis_palliatus
WBGene00003904	pabp-2	91	53.886	ENSCGRG00001019696	Pabpn1	74	62.879	Cricetulus_griseus_chok1gshd
WBGene00003904	pabp-2	79	55.357	ENSCGRG00000011102	Pabpn1	88	60.839	Cricetulus_griseus_crigri
WBGene00003904	pabp-2	86	55.000	ENSCSEG00000008774	pabpn1	62	58.904	Cynoglossus_semilaevis
WBGene00003904	pabp-2	71	58.904	ENSCVAG00000003152	pabpn1	61	58.904	Cyprinodon_variegatus
WBGene00003904	pabp-2	64	54.198	ENSDARG00000087996	pabpn1l	60	59.794	Danio_rerio
WBGene00003904	pabp-2	86	55.249	ENSDARG00000045373	pabpn1	65	59.589	Danio_rerio
WBGene00003904	pabp-2	64	58.015	ENSDORG00000023928	-	90	58.015	Dipodomys_ordii
WBGene00003904	pabp-2	100	44.681	FBgn0005648	Pabp2	64	54.483	Drosophila_melanogaster
WBGene00003904	pabp-2	99	50.691	ENSEBUG00000002322	pabpn1	69	56.790	Eptatretus_burgeri
WBGene00003904	pabp-2	75	58.861	ENSELUG00000022654	pabpn1	60	60.274	Esox_lucius
WBGene00003904	pabp-2	79	54.762	ENSFDAG00000018381	BCL2L2-PABPN1	74	62.121	Fukomys_damarensis
WBGene00003904	pabp-2	84	55.233	ENSFHEG00000007215	pabpn1	62	58.219	Fundulus_heteroclitus
WBGene00003904	pabp-2	86	55.056	ENSGMOG00000003922	pabpn1	50	59.589	Gadus_morhua
WBGene00003904	pabp-2	71	58.904	ENSGAFG00000017099	pabpn1	61	58.904	Gambusia_affinis
WBGene00003904	pabp-2	86	54.545	ENSGACG00000002167	pabpn1	65	54.658	Gasterosteus_aculeatus
WBGene00003904	pabp-2	66	54.225	ENSGGOG00000039675	-	52	52.055	Gorilla_gorilla
WBGene00003904	pabp-2	71	54.110	ENSGGOG00000025919	-	72	55.639	Gorilla_gorilla
WBGene00003904	pabp-2	91	53.886	ENSGGOG00000022683	-	54	60.274	Gorilla_gorilla
WBGene00003904	pabp-2	84	53.977	ENSHBUG00000019523	pabpn1	62	58.904	Haplochromis_burtoni
WBGene00003904	pabp-2	79	45.455	ENSHGLG00000009842	-	75	50.000	Heterocephalus_glaber_female
WBGene00003904	pabp-2	91	53.368	ENSHGLG00000002927	-	89	60.140	Heterocephalus_glaber_female
WBGene00003904	pabp-2	73	54.000	ENSHGLG00000018588	-	56	53.333	Heterocephalus_glaber_female
WBGene00003904	pabp-2	85	55.618	ENSHGLG00100006673	-	89	60.140	Heterocephalus_glaber_male
WBGene00003904	pabp-2	73	54.000	ENSHGLG00100015565	-	57	53.333	Heterocephalus_glaber_male
WBGene00003904	pabp-2	84	53.977	ENSHCOG00000004655	pabpn1	62	58.904	Hippocampus_comes
WBGene00003904	pabp-2	76	57.862	ENSIPUG00000000180	-	63	58.904	Ictalurus_punctatus
WBGene00003904	pabp-2	75	58.228	ENSIPUG00000008085	PABPN1	62	59.589	Ictalurus_punctatus
WBGene00003904	pabp-2	79	55.357	ENSSTOG00000029847	BCL2L2-PABPN1	74	62.879	Ictidomys_tridecemlineatus
WBGene00003904	pabp-2	79	55.357	ENSJJAG00000023507	Gm20521	74	62.879	Jaculus_jaculus
WBGene00003904	pabp-2	85	54.857	ENSKMAG00000018748	pabpn1	61	58.904	Kryptolebias_marmoratus
WBGene00003904	pabp-2	86	55.000	ENSLBEG00000027266	pabpn1	62	58.904	Labrus_bergylta
WBGene00003904	pabp-2	89	50.820	ENSLACG00000000646	pabpn1	66	56.291	Latimeria_chalumnae
WBGene00003904	pabp-2	86	49.718	ENSLOCG00000004694	pabpn1l	67	51.370	Lepisosteus_oculatus
WBGene00003904	pabp-2	86	56.180	ENSLOCG00000000796	pabpn1	52	59.589	Lepisosteus_oculatus
WBGene00003904	pabp-2	68	59.184	ENSLAFG00000031227	-	64	75.000	Loxodonta_africana
WBGene00003904	pabp-2	65	57.447	ENSMFAG00000031355	-	66	70.526	Macaca_fascicularis
WBGene00003904	pabp-2	90	54.450	ENSMFAG00000032183	BCL2L2-PABPN1	74	62.879	Macaca_fascicularis
WBGene00003904	pabp-2	97	47.222	ENSMMUG00000014747	BCL2L2-PABPN1	66	75.000	Macaca_mulatta
WBGene00003904	pabp-2	91	53.886	ENSMNEG00000045065	BCL2L2-PABPN1	54	60.274	Macaca_nemestrina
WBGene00003904	pabp-2	74	55.063	ENSMNEG00000035750	-	66	70.526	Macaca_nemestrina
WBGene00003904	pabp-2	89	54.211	ENSMLEG00000043862	BCL2L2-PABPN1	74	62.879	Mandrillus_leucophaeus
WBGene00003904	pabp-2	74	55.769	ENSMLEG00000034623	-	71	69.388	Mandrillus_leucophaeus
WBGene00003904	pabp-2	86	55.000	ENSMAMG00000007979	pabpn1	51	58.904	Mastacembelus_armatus
WBGene00003904	pabp-2	86	54.696	ENSMZEG00005011904	pabpn1	50	58.904	Maylandia_zebra
WBGene00003904	pabp-2	91	53.886	ENSMICG00000010002	BCL2L2-PABPN1	54	60.274	Microcebus_murinus
WBGene00003904	pabp-2	91	53.886	ENSMOCG00000018557	Gm20521	87	60.839	Microtus_ochrogaster
WBGene00003904	pabp-2	86	54.696	ENSMMOG00000005405	pabpn1	62	58.904	Mola_mola
WBGene00003904	pabp-2	86	55.000	ENSMALG00000019612	pabpn1	50	58.904	Monopterus_albus
WBGene00003904	pabp-2	91	53.886	MGP_CAROLIEiJ_G0019277	Pabpn1	87	60.839	Mus_caroli
WBGene00003904	pabp-2	91	53.886	ENSMUSG00000022194	Pabpn1	87	60.839	Mus_musculus
WBGene00003904	pabp-2	91	53.886	MGP_PahariEiJ_G0030295	Pabpn1	98	80.488	Mus_pahari
WBGene00003904	pabp-2	91	53.886	MGP_SPRETEiJ_G0020166	Pabpn1	87	60.839	Mus_spretus
WBGene00003904	pabp-2	75	57.692	ENSMPUG00000006775	-	78	62.879	Mustela_putorius_furo
WBGene00003904	pabp-2	91	52.850	ENSMLUG00000028677	-	53	58.621	Myotis_lucifugus
WBGene00003904	pabp-2	89	53.158	ENSMLUG00000003800	-	75	59.441	Myotis_lucifugus
WBGene00003904	pabp-2	74	57.692	ENSMLUG00000012452	-	51	56.410	Myotis_lucifugus
WBGene00003904	pabp-2	86	54.696	ENSNBRG00000023955	pabpn1	73	61.364	Neolamprologus_brichardi
WBGene00003904	pabp-2	66	47.857	ENSNLEG00000035292	-	64	59.375	Nomascus_leucogenys
WBGene00003904	pabp-2	91	53.886	ENSNLEG00000015007	-	52	60.274	Nomascus_leucogenys
WBGene00003904	pabp-2	77	50.289	ENSNLEG00000030598	-	60	56.579	Nomascus_leucogenys
WBGene00003904	pabp-2	84	49.162	ENSODEG00000011555	-	70	56.061	Octodon_degus
WBGene00003904	pabp-2	91	49.474	ENSODEG00000003739	-	50	56.849	Octodon_degus
WBGene00003904	pabp-2	86	54.696	ENSONIG00000008112	pabpn1	50	58.904	Oreochromis_niloticus
WBGene00003904	pabp-2	68	58.219	ENSOANG00000009218	-	66	73.958	Ornithorhynchus_anatinus
WBGene00003904	pabp-2	93	52.792	ENSOCUG00000016174	PABPN1	53	59.589	Oryctolagus_cuniculus
WBGene00003904	pabp-2	86	54.696	ENSORLG00000027900	pabpn1	61	58.904	Oryzias_latipes
WBGene00003904	pabp-2	84	53.977	ENSORLG00015000018	pabpn1	62	58.904	Oryzias_latipes_hsok
WBGene00003904	pabp-2	86	55.000	ENSOMEG00000016618	pabpn1	53	58.904	Oryzias_melastigma
WBGene00003904	pabp-2	89	54.211	ENSPPAG00000028984	BCL2L2-PABPN1	78	62.879	Pan_paniscus
WBGene00003904	pabp-2	79	55.357	ENSPTIG00000001063	BCL2L2-PABPN1	74	62.879	Panthera_tigris_altaica
WBGene00003904	pabp-2	71	51.370	ENSPTRG00000047273	-	51	51.370	Pan_troglodytes
WBGene00003904	pabp-2	91	53.886	ENSPTRG00000006167	BCL2L2	54	60.274	Pan_troglodytes
WBGene00003904	pabp-2	91	53.886	ENSPANG00000021100	BCL2L2-PABPN1	54	60.274	Papio_anubis
WBGene00003904	pabp-2	74	55.063	ENSPANG00000023326	-	66	70.526	Papio_anubis
WBGene00003904	pabp-2	71	59.589	ENSPKIG00000018052	pabpn1	68	56.522	Paramormyrops_kingsleyae
WBGene00003904	pabp-2	86	55.249	ENSPKIG00000008144	-	57	54.819	Paramormyrops_kingsleyae
WBGene00003904	pabp-2	80	50.610	ENSPKIG00000008340	pabpn1l	75	49.032	Paramormyrops_kingsleyae
WBGene00003904	pabp-2	55	61.062	ENSPSIG00000011959	-	69	65.625	Pelodiscus_sinensis
WBGene00003904	pabp-2	86	55.000	ENSPMGG00000022027	pabpn1	53	58.904	Periophthalmus_magnuspinnatus
WBGene00003904	pabp-2	91	53.886	ENSPEMG00000008332	Gm20521	88	60.274	Peromyscus_maniculatus_bairdii
WBGene00003904	pabp-2	74	60.265	ENSPMAG00000006212	pabpn1	67	58.025	Petromyzon_marinus
WBGene00003904	pabp-2	71	58.904	ENSPFOG00000010351	pabpn1	61	58.904	Poecilia_formosa
WBGene00003904	pabp-2	86	55.307	ENSPLAG00000022696	pabpn1	50	58.904	Poecilia_latipinna
WBGene00003904	pabp-2	71	58.904	ENSPMEG00000020856	pabpn1	61	58.904	Poecilia_mexicana
WBGene00003904	pabp-2	71	58.904	ENSPREG00000011278	pabpn1	61	58.904	Poecilia_reticulata
WBGene00003904	pabp-2	85	56.180	ENSPPYG00000005663	PABPN1	52	60.274	Pongo_abelii
WBGene00003904	pabp-2	52	60.550	ENSPCAG00000005902	PABPN1	50	48.299	Procavia_capensis
WBGene00003904	pabp-2	91	53.886	ENSPCOG00000028047	BCL2L2-PABPN1	54	60.274	Propithecus_coquereli
WBGene00003904	pabp-2	84	53.977	ENSPNYG00000013182	pabpn1	62	58.904	Pundamilia_nyererei
WBGene00003904	pabp-2	75	51.613	ENSPNAG00000021666	pabpn1l	75	50.323	Pygocentrus_nattereri
WBGene00003904	pabp-2	86	55.249	ENSPNAG00000023526	pabpn1	62	59.589	Pygocentrus_nattereri
WBGene00003904	pabp-2	89	51.596	ENSRBIG00000039547	-	51	54.110	Rhinopithecus_bieti
WBGene00003904	pabp-2	71	56.164	ENSRBIG00000042811	-	60	56.164	Rhinopithecus_bieti
WBGene00003904	pabp-2	91	50.259	ENSRROG00000040409	-	51	54.110	Rhinopithecus_roxellana
WBGene00003904	pabp-2	85	56.180	ENSRROG00000045535	BCL2L2-PABPN1	74	62.879	Rhinopithecus_roxellana
WBGene00003904	pabp-2	89	51.232	ENSSBOG00000026930	BCL2L2-PABPN1	78	62.879	Saimiri_boliviensis_boliviensis
WBGene00003904	pabp-2	89	53.158	ENSSHAG00000014841	-	65	60.140	Sarcophilus_harrisii
WBGene00003904	pabp-2	99	45.540	ENSSHAG00000007707	-	67	49.091	Sarcophilus_harrisii
WBGene00003904	pabp-2	72	52.027	ENSSFOG00015015833	pabpn1l	68	50.336	Scleropages_formosus
WBGene00003904	pabp-2	86	55.556	ENSSFOG00015012565	pabpn1	64	60.959	Scleropages_formosus
WBGene00003904	pabp-2	84	54.651	ENSSFOG00015014718	pabpn1	68	56.522	Scleropages_formosus
WBGene00003904	pabp-2	86	55.000	ENSSMAG00000020157	pabpn1	62	58.904	Scophthalmus_maximus
WBGene00003904	pabp-2	86	55.000	ENSSDUG00000020582	pabpn1	50	58.904	Seriola_dumerili
WBGene00003904	pabp-2	75	57.595	ENSSLDG00000007118	pabpn1	62	58.904	Seriola_lalandi_dorsalis
WBGene00003904	pabp-2	72	56.667	ENSSPUG00000018308	-	74	60.606	Sphenodon_punctatus
WBGene00003904	pabp-2	86	55.000	ENSSPAG00000021658	pabpn1	61	58.904	Stegastes_partitus
WBGene00003904	pabp-2	71	54.483	ENSSSCG00000034805	-	58	53.103	Sus_scrofa
WBGene00003904	pabp-2	86	55.000	ENSTRUG00000023664	pabpn1	62	58.904	Takifugu_rubripes
WBGene00003904	pabp-2	86	55.000	ENSTNIG00000005369	pabpn1	67	58.904	Tetraodon_nigroviridis
WBGene00003904	pabp-2	89	54.211	ENSVVUG00000019912	BCL2L2-PABPN1	56	60.839	Vulpes_vulpes
WBGene00003904	pabp-2	73	59.333	ENSXETG00000014597	pabpn1	50	58.667	Xenopus_tropicalis
WBGene00003904	pabp-2	71	58.904	ENSXMAG00000006196	pabpn1	61	58.904	Xiphophorus_maculatus