EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00003954 (Gene tree)
Gene ID: -
Gene Symbol: pcm-1
Alias: -
Full Name: Protein-L-isoaspartate O-methyltransferase
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Minus strand
Length: 3298 bases
Position: chrV:5960585-5963882
Accession: Q27873
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
C10F3	Methyltransf_31	PF13847.6	1.5e-07	1	1
C10F3	Methyltransf_31	PF13847.6	1.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
C10F3.5b	-	917	NM_001129372	C10F3.5b	219 (aa)	NP_001122844	G8JY24
C10F3.5a	-	981	-	C10F3.5a	225 (aa)	NP_504551	Q27873

Gene Model

Click here to download WBGene00003954's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00003954's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00003954	pcm-1	100	50.442	ENSAPOG00000013007	pcmt	84	50.442	Acanthochromis_polyacanthus
WBGene00003954	pcm-1	99	51.111	ENSACIG00000023767	pcmt	84	51.111	Amphilophus_citrinellus
WBGene00003954	pcm-1	99	51.121	ENSACIG00000024027	pcmtl	99	51.121	Amphilophus_citrinellus
WBGene00003954	pcm-1	100	50.442	ENSAOCG00000002467	pcmt	84	50.442	Amphiprion_ocellaris
WBGene00003954	pcm-1	99	50.667	ENSAPEG00000005991	pcmt	84	50.667	Amphiprion_percula
WBGene00003954	pcm-1	99	52.000	ENSATEG00000020772	pcmt	99	52.000	Anabas_testudineus
WBGene00003954	pcm-1	100	50.439	ENSAPLG00000004765	-	99	50.439	Anas_platyrhynchos
WBGene00003954	pcm-1	99	49.776	ENSAPLG00000009762	PCMT1	98	49.776	Anas_platyrhynchos
WBGene00003954	pcm-1	99	52.889	ENSACAG00000006734	PCMT1	99	52.889	Anolis_carolinensis
WBGene00003954	pcm-1	100	55.310	ENSACAG00000013901	-	99	55.310	Anolis_carolinensis
WBGene00003954	pcm-1	100	51.327	ENSACLG00000027300	pcmt	99	49.333	Astatotilapia_calliptera
WBGene00003954	pcm-1	99	52.000	ENSAMXG00000036038	pcmt	99	50.000	Astyanax_mexicanus
WBGene00003954	pcm-1	99	52.466	ENSAMXG00000033948	pcmtl	90	52.466	Astyanax_mexicanus
WBGene00003954	pcm-1	99	52.000	ENSBTAG00000010204	PCMT1	81	54.335	Bos_taurus
WBGene00003954	pcm-1	100	51.770	ENSCHIG00000025710	PCMT1	96	50.239	Capra_hircus
WBGene00003954	pcm-1	100	44.248	ENSCHOG00000009436	PCMT1	99	44.248	Choloepus_hoffmanni
WBGene00003954	pcm-1	99	52.889	ENSCPBG00000016587	PCMT1	79	52.889	Chrysemys_picta_bellii
WBGene00003954	pcm-1	100	53.540	ENSCPBG00000013417	-	91	53.540	Chrysemys_picta_bellii
WBGene00003954	pcm-1	100	51.327	ENSCSEG00000003382	pcmt	81	51.327	Cynoglossus_semilaevis
WBGene00003954	pcm-1	100	51.327	ENSCVAG00000021517	pcmt	84	51.327	Cyprinodon_variegatus
WBGene00003954	pcm-1	99	52.915	ENSCVAG00000010875	pcmtl	90	52.915	Cyprinodon_variegatus
WBGene00003954	pcm-1	99	52.018	ENSDARG00000042848	pcmtl	89	54.706	Danio_rerio
WBGene00003954	pcm-1	100	52.212	ENSDARG00000015201	pcmt	98	52.444	Danio_rerio
WBGene00003954	pcm-1	86	54.639	ENSDORG00000003137	Pcmt1	99	54.639	Dipodomys_ordii
WBGene00003954	pcm-1	84	52.880	ENSEBUG00000000561	PCMT1	97	52.880	Eptatretus_burgeri
WBGene00003954	pcm-1	100	52.655	ENSEASG00005008914	-	79	52.889	Equus_asinus_asinus
WBGene00003954	pcm-1	100	52.655	ENSECAG00000005292	PCMT1	78	52.655	Equus_caballus
WBGene00003954	pcm-1	100	50.885	ENSEEUG00000015095	PCMT1	99	50.885	Erinaceus_europaeus
WBGene00003954	pcm-1	100	51.770	ENSELUG00000019001	pcmt	84	51.770	Esox_lucius
WBGene00003954	pcm-1	99	52.915	ENSELUG00000016823	pcmtl	90	52.915	Esox_lucius
WBGene00003954	pcm-1	86	54.124	ENSFALG00000012172	PCMT1	99	54.124	Ficedula_albicollis
WBGene00003954	pcm-1	100	52.212	ENSFALG00000001118	-	91	52.212	Ficedula_albicollis
WBGene00003954	pcm-1	100	51.327	ENSFHEG00000016480	pcmt	84	51.556	Fundulus_heteroclitus
WBGene00003954	pcm-1	100	50.442	ENSGMOG00000017692	pcmt	99	50.442	Gadus_morhua
WBGene00003954	pcm-1	100	52.212	ENSGALG00000032988	PCMT1L	92	52.444	Gallus_gallus
WBGene00003954	pcm-1	99	52.889	ENSGALG00000012388	PCMT1	99	52.889	Gallus_gallus
WBGene00003954	pcm-1	100	51.770	ENSGAFG00000004794	pcmt	84	51.770	Gambusia_affinis
WBGene00003954	pcm-1	99	52.018	ENSGAFG00000003376	pcmtl	94	52.018	Gambusia_affinis
WBGene00003954	pcm-1	99	52.889	ENSGAGG00000020154	PCMT1	99	52.889	Gopherus_agassizii
WBGene00003954	pcm-1	100	53.540	ENSGAGG00000013101	-	91	53.540	Gopherus_agassizii
WBGene00003954	pcm-1	100	51.327	ENSHBUG00000010762	pcmt	99	49.333	Haplochromis_burtoni
WBGene00003954	pcm-1	99	50.222	ENSHCOG00000010431	pcmt	84	50.222	Hippocampus_comes
WBGene00003954	pcm-1	99	51.556	ENSIPUG00000009756	pcmt1	84	51.556	Ictalurus_punctatus
WBGene00003954	pcm-1	99	52.915	ENSIPUG00000020977	pimt	90	52.915	Ictalurus_punctatus
WBGene00003954	pcm-1	99	52.444	ENSJJAG00000023560	Pcmt1	99	52.444	Jaculus_jaculus
WBGene00003954	pcm-1	99	52.018	ENSKMAG00000006639	pcmtl	90	52.018	Kryptolebias_marmoratus
WBGene00003954	pcm-1	100	50.442	ENSKMAG00000022208	pcmt	84	50.442	Kryptolebias_marmoratus
WBGene00003954	pcm-1	100	51.770	ENSLBEG00000017170	pcmt	84	51.770	Labrus_bergylta
WBGene00003954	pcm-1	99	52.889	ENSLACG00000006397	PCMT1	96	50.459	Latimeria_chalumnae
WBGene00003954	pcm-1	100	50.442	ENSLOCG00000017009	pcmt	93	50.667	Lepisosteus_oculatus
WBGene00003954	pcm-1	99	52.444	ENSLAFG00000012417	PCMT1	99	52.444	Loxodonta_africana
WBGene00003954	pcm-1	100	51.770	ENSMAMG00000000917	pcmt	84	51.770	Mastacembelus_armatus
WBGene00003954	pcm-1	99	51.556	ENSMZEG00005004971	pcmt	99	49.333	Maylandia_zebra
WBGene00003954	pcm-1	99	49.778	ENSMGAG00000012636	PCMT1	99	51.691	Meleagris_gallopavo
WBGene00003954	pcm-1	99	52.444	ENSMGAG00000003062	-	99	52.444	Meleagris_gallopavo
WBGene00003954	pcm-1	97	52.055	ENSMMOG00000015402	pcmt	86	52.055	Mola_mola
WBGene00003954	pcm-1	99	52.018	ENSMMOG00000012018	pcmtl	93	52.018	Mola_mola
WBGene00003954	pcm-1	100	51.327	ENSMALG00000020956	pcmt	99	51.327	Monopterus_albus
WBGene00003954	pcm-1	99	51.556	ENSNBRG00000003034	pcmt	99	51.556	Neolamprologus_brichardi
WBGene00003954	pcm-1	100	51.327	ENSONIG00000005572	pcmt	84	51.327	Oreochromis_niloticus
WBGene00003954	pcm-1	99	52.000	ENSOANG00000001066	PCMT1	81	52.000	Ornithorhynchus_anatinus
WBGene00003954	pcm-1	100	51.770	ENSORLG00000017625	pcmt	84	51.770	Oryzias_latipes
WBGene00003954	pcm-1	99	52.000	ENSORLG00020018295	pcmt	84	52.000	Oryzias_latipes_hni
WBGene00003954	pcm-1	99	52.000	ENSORLG00015016675	pcmt	84	52.000	Oryzias_latipes_hsok
WBGene00003954	pcm-1	100	52.212	ENSOMEG00000021999	pcmt	84	52.212	Oryzias_melastigma
WBGene00003954	pcm-1	93	50.000	ENSOARG00000002890	PCMT1	99	50.000	Ovis_aries
WBGene00003954	pcm-1	100	53.097	ENSPKIG00000022992	pcmtl	91	53.097	Paramormyrops_kingsleyae
WBGene00003954	pcm-1	86	53.608	ENSPSIG00000017327	PCMT1	99	53.608	Pelodiscus_sinensis
WBGene00003954	pcm-1	100	52.212	ENSPSIG00000012438	-	94	52.212	Pelodiscus_sinensis
WBGene00003954	pcm-1	100	44.545	ENSPMGG00000013455	pcmt	83	44.545	Periophthalmus_magnuspinnatus
WBGene00003954	pcm-1	100	51.770	ENSPFOG00000015367	pcmt	84	51.770	Poecilia_formosa
WBGene00003954	pcm-1	100	51.770	ENSPLAG00000004032	pcmt	99	49.772	Poecilia_latipinna
WBGene00003954	pcm-1	100	51.770	ENSPMEG00000010356	pcmt	84	51.770	Poecilia_mexicana
WBGene00003954	pcm-1	99	49.091	ENSPREG00000015965	pcmt	99	49.091	Poecilia_reticulata
WBGene00003954	pcm-1	99	51.121	ENSPREG00000016451	pcmtl	91	51.121	Poecilia_reticulata
WBGene00003954	pcm-1	100	34.956	ENSPCAG00000003359	PCMT1	99	34.956	Procavia_capensis
WBGene00003954	pcm-1	99	51.556	ENSPNYG00000000882	pcmt	99	49.333	Pundamilia_nyererei
WBGene00003954	pcm-1	100	50.885	ENSPNAG00000002676	pcmt	84	50.885	Pygocentrus_nattereri
WBGene00003954	pcm-1	99	52.018	ENSPNAG00000005412	pcmtl	90	52.018	Pygocentrus_nattereri
WBGene00003954	pcm-1	73	52.795	ENSSHAG00000017541	PCMT1	99	52.795	Sarcophilus_harrisii
WBGene00003954	pcm-1	99	52.000	ENSSFOG00015020607	pcmt1	99	52.000	Scleropages_formosus
WBGene00003954	pcm-1	100	50.885	ENSSMAG00000003401	pcmt	83	50.885	Scophthalmus_maximus
WBGene00003954	pcm-1	100	51.770	ENSSDUG00000007397	pcmt	84	51.770	Seriola_dumerili
WBGene00003954	pcm-1	72	51.572	ENSSLDG00000011313	-	96	51.875	Seriola_lalandi_dorsalis
WBGene00003954	pcm-1	100	51.770	ENSSLDG00000020446	pcmt	84	51.770	Seriola_lalandi_dorsalis
WBGene00003954	pcm-1	99	52.444	ENSSPUG00000005816	PCMT1	99	52.444	Sphenodon_punctatus
WBGene00003954	pcm-1	99	50.667	ENSSPAG00000016434	pcmt	84	50.667	Stegastes_partitus
WBGene00003954	pcm-1	99	52.444	ENSSSCG00000004103	PCMT1	79	52.444	Sus_scrofa
WBGene00003954	pcm-1	86	54.124	ENSTGUG00000011332	PCMT1	100	54.124	Taeniopygia_guttata
WBGene00003954	pcm-1	99	52.444	ENSTGUG00000007336	-	100	52.444	Taeniopygia_guttata
WBGene00003954	pcm-1	99	54.260	ENSTRUG00000025102	pcmtl	90	54.260	Takifugu_rubripes
WBGene00003954	pcm-1	100	50.439	ENSTNIG00000019127	pcmt	99	50.439	Tetraodon_nigroviridis
WBGene00003954	pcm-1	99	51.556	ENSXETG00000015985	-	90	51.556	Xenopus_tropicalis
WBGene00003954	pcm-1	99	52.444	ENSXETG00000017500	pcmt1	98	54.749	Xenopus_tropicalis
WBGene00003954	pcm-1	99	51.570	ENSXCOG00000007525	pcmtl	91	51.570	Xiphophorus_couchianus
WBGene00003954	pcm-1	99	49.772	ENSXCOG00000018495	pcmt	99	49.772	Xiphophorus_couchianus
WBGene00003954	pcm-1	99	51.570	ENSXMAG00000013327	pcmtl	90	51.570	Xiphophorus_maculatus
WBGene00003954	pcm-1	99	52.000	ENSXMAG00000006249	pcmt	84	52.000	Xiphophorus_maculatus