EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00004187 (Gene tree)
Gene ID: -
Gene Symbol: prp-8
Alias: -
Full Name: Pre-mRNA-splicing factor 8 homolog
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Plus strand
Length: 8330 bases
Position: chrIII:8164373-8172702
Accession: P34369
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
C50C3	RRM_4	PF10598.9	9.2e-47	1	1
C50C3	U5_2-snRNA_bdg	PF10597.9	4.4e-73	1	1
C50C3	PRO8NT	PF08082.11	1.4e-87	1	1
C50C3	U6-snRNA_bdg	PF10596.9	4e-89	1	1
C50C3	PROCN	PF08083.11	4.7e-233	1	1
C50C3	PRP8_domainIV	PF12134.8	5e-127	1	1
C50C3	PROCT	PF08084.11	6.2e-50	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
C50C3.6	-	7399	NM_066384	C50C3.6	2329 (aa)	NP_498785	P34369

Gene Model

Click here to download WBGene00004187's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00004187's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00004187	prp-8	99	86.529	ENSG00000174231	PRPF8	99	86.444	Homo_sapiens
WBGene00004187	prp-8	99	87.154	ENSAPOG00000010079	prpf8	99	86.704	Acanthochromis_polyacanthus
WBGene00004187	prp-8	99	86.529	ENSAMEG00000007940	PRPF8	99	86.444	Ailuropoda_melanoleuca
WBGene00004187	prp-8	99	85.757	ENSACIG00000018280	prpf8	99	85.316	Amphilophus_citrinellus
WBGene00004187	prp-8	99	87.154	ENSAOCG00000010725	prpf8	99	86.790	Amphiprion_ocellaris
WBGene00004187	prp-8	99	87.154	ENSAPEG00000014397	prpf8	99	86.790	Amphiprion_percula
WBGene00004187	prp-8	99	86.684	ENSATEG00000010062	prpf8	99	86.237	Anabas_testudineus
WBGene00004187	prp-8	97	87.223	ENSAPLG00000010357	PRPF8	100	87.134	Anas_platyrhynchos
WBGene00004187	prp-8	82	87.435	ENSACAG00000014784	PRPF8	99	87.020	Anolis_carolinensis
WBGene00004187	prp-8	99	86.529	ENSANAG00000032629	PRPF8	99	86.444	Aotus_nancymaae
WBGene00004187	prp-8	99	86.958	ENSACLG00000020858	prpf8	99	86.872	Astatotilapia_calliptera
WBGene00004187	prp-8	99	87.024	ENSAMXG00000020291	prpf8	99	86.455	Astyanax_mexicanus
WBGene00004187	prp-8	99	86.529	ENSBTAG00000011488	PRPF8	99	86.444	Bos_taurus
WBGene00004187	prp-8	99	86.529	ENSCJAG00000001911	PRPF8	99	86.444	Callithrix_jacchus
WBGene00004187	prp-8	99	86.529	ENSCAFG00000019221	PRPF8	99	86.444	Canis_familiaris
WBGene00004187	prp-8	96	87.183	ENSCAFG00020009943	PRPF8	100	87.094	Canis_lupus_dingo
WBGene00004187	prp-8	99	86.529	ENSCHIG00000017499	PRPF8	99	86.444	Capra_hircus
WBGene00004187	prp-8	99	86.529	ENSTSYG00000014120	PRPF8	99	86.444	Carlito_syrichta
WBGene00004187	prp-8	97	85.251	ENSCAPG00000009459	PRPF8	99	85.162	Cavia_aperea
WBGene00004187	prp-8	99	86.529	ENSCPOG00000010379	PRPF8	99	86.444	Cavia_porcellus
WBGene00004187	prp-8	99	86.529	ENSCCAG00000031983	-	99	86.444	Cebus_capucinus
WBGene00004187	prp-8	99	86.529	ENSCATG00000038595	PRPF8	99	86.444	Cercocebus_atys
WBGene00004187	prp-8	99	86.529	ENSCLAG00000004388	PRPF8	99	86.444	Chinchilla_lanigera
WBGene00004187	prp-8	99	86.529	ENSCSAG00000013929	PRPF8	99	86.444	Chlorocebus_sabaeus
WBGene00004187	prp-8	81	86.941	ENSCHOG00000008590	PRPF8	86	86.941	Choloepus_hoffmanni
WBGene00004187	prp-8	99	86.535	ENSCPBG00000020409	PRPF8	99	86.449	Chrysemys_picta_bellii
WBGene00004187	prp-8	98	85.952	ENSCSAVG00000007825	-	100	84.728	Ciona_savignyi
WBGene00004187	prp-8	99	86.529	ENSCANG00000043088	PRPF8	99	86.444	Colobus_angolensis_palliatus
WBGene00004187	prp-8	74	92.731	ENSCGRG00000005129	Prpf8	100	92.731	Cricetulus_griseus_crigri
WBGene00004187	prp-8	99	86.938	ENSCSEG00000007905	prpf8	99	86.575	Cynoglossus_semilaevis
WBGene00004187	prp-8	99	86.981	ENSDARG00000026180	prpf8	99	86.638	Danio_rerio
WBGene00004187	prp-8	93	87.633	ENSDNOG00000018471	PRPF8	99	87.540	Dasypus_novemcinctus
WBGene00004187	prp-8	83	85.613	ENSDORG00000006185	Prpf8	95	85.470	Dipodomys_ordii
WBGene00004187	prp-8	99	85.819	FBgn0033688	Prp8	97	85.727	Drosophila_melanogaster
WBGene00004187	prp-8	97	85.506	ENSETEG00000017592	PRPF8	97	85.506	Echinops_telfairi
WBGene00004187	prp-8	99	84.972	ENSEBUG00000006548	prpf8	99	84.285	Eptatretus_burgeri
WBGene00004187	prp-8	99	86.529	ENSEASG00005009514	PRPF8	99	86.444	Equus_asinus_asinus
WBGene00004187	prp-8	98	87.242	ENSECAG00000021318	PRPF8	100	87.155	Equus_caballus
WBGene00004187	prp-8	66	94.400	ENSEEUG00000012120	-	66	94.815	Erinaceus_europaeus
WBGene00004187	prp-8	97	86.388	ENSELUG00000007120	prpf8	99	86.027	Esox_lucius
WBGene00004187	prp-8	99	86.529	ENSFCAG00000006297	PRPF8	99	86.444	Felis_catus
WBGene00004187	prp-8	99	86.621	ENSFALG00000006628	PRPF8	99	86.535	Ficedula_albicollis
WBGene00004187	prp-8	99	86.529	ENSFDAG00000004711	PRPF8	99	86.444	Fukomys_damarensis
WBGene00004187	prp-8	99	86.894	ENSFHEG00000021084	prpf8	99	86.446	Fundulus_heteroclitus
WBGene00004187	prp-8	99	84.923	ENSGMOG00000002028	prpf8	99	84.612	Gadus_morhua
WBGene00004187	prp-8	99	86.621	ENSGALG00000002943	PRPF8	99	86.535	Gallus_gallus
WBGene00004187	prp-8	99	86.595	ENSGAFG00000010337	prpf8	99	86.489	Gambusia_affinis
WBGene00004187	prp-8	99	86.649	ENSGACG00000008504	prpf8	99	86.575	Gasterosteus_aculeatus
WBGene00004187	prp-8	99	86.767	ENSGAGG00000008350	PRPF8	99	86.681	Gopherus_agassizii
WBGene00004187	prp-8	99	86.529	ENSGGOG00000005516	PRPF8	99	86.444	Gorilla_gorilla
WBGene00004187	prp-8	99	86.981	ENSHBUG00000016192	prpf8	99	86.327	Haplochromis_burtoni
WBGene00004187	prp-8	99	86.529	ENSHGLG00000012029	PRPF8	99	86.444	Heterocephalus_glaber_female
WBGene00004187	prp-8	99	86.529	ENSHGLG00100016494	PRPF8	99	86.444	Heterocephalus_glaber_male
WBGene00004187	prp-8	99	87.067	ENSHCOG00000016414	prpf8	99	86.618	Hippocampus_comes
WBGene00004187	prp-8	99	87.024	ENSIPUG00000023230	prpf8	99	86.412	Ictalurus_punctatus
WBGene00004187	prp-8	99	86.529	ENSSTOG00000005128	PRPF8	99	86.444	Ictidomys_tridecemlineatus
WBGene00004187	prp-8	99	84.556	ENSJJAG00000021159	Prpf8	99	84.470	Jaculus_jaculus
WBGene00004187	prp-8	99	87.024	ENSKMAG00000016118	prpf8	99	86.661	Kryptolebias_marmoratus
WBGene00004187	prp-8	99	86.938	ENSLBEG00000026903	prpf8	99	86.532	Labrus_bergylta
WBGene00004187	prp-8	95	85.346	ENSLACG00000010479	PRPF8	99	88.000	Latimeria_chalumnae
WBGene00004187	prp-8	99	86.500	ENSLOCG00000005409	prpf8	99	86.586	Lepisosteus_oculatus
WBGene00004187	prp-8	99	86.529	ENSLAFG00000015445	PRPF8	99	86.444	Loxodonta_africana
WBGene00004187	prp-8	99	86.529	ENSMFAG00000039995	PRPF8	99	86.444	Macaca_fascicularis
WBGene00004187	prp-8	99	86.529	ENSMMUG00000004820	PRPF8	99	86.444	Macaca_mulatta
WBGene00004187	prp-8	99	86.529	ENSMNEG00000035713	PRPF8	99	86.444	Macaca_nemestrina
WBGene00004187	prp-8	99	86.529	ENSMLEG00000037937	PRPF8	99	86.444	Mandrillus_leucophaeus
WBGene00004187	prp-8	99	87.111	ENSMAMG00000008919	prpf8	99	86.661	Mastacembelus_armatus
WBGene00004187	prp-8	99	86.938	ENSMZEG00005015073	prpf8	99	86.489	Maylandia_zebra
WBGene00004187	prp-8	99	86.621	ENSMGAG00000004769	PRPF8	99	86.535	Meleagris_gallopavo
WBGene00004187	prp-8	99	86.529	ENSMICG00000010320	PRPF8	99	86.444	Microcebus_murinus
WBGene00004187	prp-8	99	86.529	ENSMOCG00000016838	Prpf8	99	86.444	Microtus_ochrogaster
WBGene00004187	prp-8	99	86.716	ENSMMOG00000011887	prpf8	99	86.268	Mola_mola
WBGene00004187	prp-8	99	86.681	ENSMODG00000010480	PRPF8	99	86.595	Monodelphis_domestica
WBGene00004187	prp-8	96	86.758	ENSMALG00000003558	prpf8	99	86.758	Monopterus_albus
WBGene00004187	prp-8	99	86.486	MGP_CAROLIEiJ_G0016740	Prpf8	99	86.401	Mus_caroli
WBGene00004187	prp-8	99	86.486	ENSMUSG00000020850	Prpf8	99	86.401	Mus_musculus
WBGene00004187	prp-8	99	86.529	MGP_PahariEiJ_G0017877	Prpf8	99	86.444	Mus_pahari
WBGene00004187	prp-8	99	86.486	MGP_SPRETEiJ_G0017583	Prpf8	99	86.401	Mus_spretus
WBGene00004187	prp-8	99	86.529	ENSMPUG00000013227	PRPF8	99	86.444	Mustela_putorius_furo
WBGene00004187	prp-8	99	86.418	ENSMLUG00000002666	PRPF8	99	86.332	Myotis_lucifugus
WBGene00004187	prp-8	99	84.813	ENSNGAG00000005305	Prpf8	99	84.728	Nannospalax_galili
WBGene00004187	prp-8	99	86.981	ENSNBRG00000013127	prpf8	99	86.532	Neolamprologus_brichardi
WBGene00004187	prp-8	96	87.233	ENSNLEG00000000897	PRPF8	97	87.044	Nomascus_leucogenys
WBGene00004187	prp-8	99	85.392	ENSMEUG00000015999	PRPF8	100	85.306	Notamacropus_eugenii
WBGene00004187	prp-8	99	85.242	ENSOPRG00000003102	PRPF8	99	85.157	Ochotona_princeps
WBGene00004187	prp-8	99	86.529	ENSODEG00000008468	PRPF8	99	86.444	Octodon_degus
WBGene00004187	prp-8	99	86.938	ENSONIG00000008153	prpf8	99	86.489	Oreochromis_niloticus
WBGene00004187	prp-8	82	88.628	ENSOANG00000004250	PRPF8	97	88.213	Ornithorhynchus_anatinus
WBGene00004187	prp-8	99	86.529	ENSOCUG00000000081	PRPF8	99	86.444	Oryctolagus_cuniculus
WBGene00004187	prp-8	99	86.721	ENSORLG00000008036	prpf8	99	86.237	Oryzias_latipes
WBGene00004187	prp-8	99	86.684	ENSORLG00020021070	prpf8	98	86.237	Oryzias_latipes_hni
WBGene00004187	prp-8	99	86.721	ENSORLG00015002340	prpf8	98	86.274	Oryzias_latipes_hsok
WBGene00004187	prp-8	99	85.050	ENSOMEG00000016866	prpf8	98	85.069	Oryzias_melastigma
WBGene00004187	prp-8	99	86.418	ENSOARG00000013312	PRPF8	99	86.332	Ovis_aries
WBGene00004187	prp-8	99	86.529	ENSPPAG00000042753	PRPF8	99	86.444	Pan_paniscus
WBGene00004187	prp-8	99	86.529	ENSPPRG00000008746	PRPF8	99	86.444	Panthera_pardus
WBGene00004187	prp-8	99	86.444	ENSPTIG00000019200	PRPF8	99	86.358	Panthera_tigris_altaica
WBGene00004187	prp-8	99	86.529	ENSPTRG00000039576	PRPF8	99	86.444	Pan_troglodytes
WBGene00004187	prp-8	99	87.002	ENSPANG00000024607	PRPF8	98	86.915	Papio_anubis
WBGene00004187	prp-8	99	86.704	ENSPKIG00000011201	prpf8	99	86.618	Paramormyrops_kingsleyae
WBGene00004187	prp-8	99	86.492	ENSPSIG00000013393	PRPF8	99	86.407	Pelodiscus_sinensis
WBGene00004187	prp-8	99	86.529	ENSPEMG00000021699	Prpf8	99	86.444	Peromyscus_maniculatus_bairdii
WBGene00004187	prp-8	97	85.156	ENSPMAG00000005438	prpf8	100	85.207	Petromyzon_marinus
WBGene00004187	prp-8	99	86.681	ENSPCIG00000022603	PRPF8	100	87.049	Phascolarctos_cinereus
WBGene00004187	prp-8	99	86.894	ENSPFOG00000007005	prpf8	98	86.446	Poecilia_formosa
WBGene00004187	prp-8	99	85.597	ENSPLAG00000020777	prpf8	99	85.028	Poecilia_latipinna
WBGene00004187	prp-8	99	86.894	ENSPMEG00000004051	prpf8	98	86.446	Poecilia_mexicana
WBGene00004187	prp-8	99	86.938	ENSPREG00000021902	prpf8	99	86.358	Poecilia_reticulata
WBGene00004187	prp-8	99	86.529	ENSPPYG00000007777	PRPF8	99	86.444	Pongo_abelii
WBGene00004187	prp-8	90	86.203	ENSPCAG00000008938	PRPF8	90	85.849	Procavia_capensis
WBGene00004187	prp-8	99	86.529	ENSPCOG00000015182	PRPF8	99	86.444	Propithecus_coquereli
WBGene00004187	prp-8	93	89.485	ENSPVAG00000002134	PRPF8	92	89.933	Pteropus_vampyrus
WBGene00004187	prp-8	99	86.981	ENSPNYG00000016356	prpf8	99	86.327	Pundamilia_nyererei
WBGene00004187	prp-8	99	86.833	ENSPNAG00000009247	prpf8	99	86.399	Pygocentrus_nattereri
WBGene00004187	prp-8	99	86.486	ENSRNOG00000003495	Prpf8	99	86.401	Rattus_norvegicus
WBGene00004187	prp-8	99	86.529	ENSRBIG00000031219	PRPF8	100	86.738	Rhinopithecus_bieti
WBGene00004187	prp-8	99	86.529	ENSRROG00000038014	PRPF8	100	86.738	Rhinopithecus_roxellana
WBGene00004187	prp-8	99	60.892	YHR165C	PRP8	96	60.978	Saccharomyces_cerevisiae
WBGene00004187	prp-8	99	86.529	ENSSBOG00000029717	PRPF8	99	86.444	Saimiri_boliviensis_boliviensis
WBGene00004187	prp-8	99	86.638	ENSSHAG00000006167	PRPF8	99	86.552	Sarcophilus_harrisii
WBGene00004187	prp-8	99	86.455	ENSSFOG00015013905	prpf8	99	86.532	Scleropages_formosus
WBGene00004187	prp-8	99	86.938	ENSSMAG00000017736	prpf8	99	86.099	Scophthalmus_maximus
WBGene00004187	prp-8	99	87.067	ENSSDUG00000003029	prpf8	99	86.228	Seriola_dumerili
WBGene00004187	prp-8	69	88.062	ENSSLDG00000017096	prpf8	100	88.062	Seriola_lalandi_dorsalis
WBGene00004187	prp-8	87	83.974	ENSSARG00000002892	PRPF8	87	83.974	Sorex_araneus
WBGene00004187	prp-8	99	86.681	ENSSPUG00000007463	PRPF8	99	86.595	Sphenodon_punctatus
WBGene00004187	prp-8	99	86.678	ENSSPAG00000015639	prpf8	99	86.231	Stegastes_partitus
WBGene00004187	prp-8	99	86.529	ENSSSCG00000017817	PRPF8	99	86.444	Sus_scrofa
WBGene00004187	prp-8	52	89.024	ENSTGUG00000015597	-	95	89.024	Taeniopygia_guttata
WBGene00004187	prp-8	99	86.621	ENSTGUG00000005648	-	99	86.535	Taeniopygia_guttata
WBGene00004187	prp-8	99	86.938	ENSTRUG00000015906	prpf8	99	86.489	Takifugu_rubripes
WBGene00004187	prp-8	94	88.246	ENSTNIG00000003460	prpf8	98	88.246	Tetraodon_nigroviridis
WBGene00004187	prp-8	89	90.829	ENSTBEG00000006431	PRPF8	88	91.397	Tupaia_belangeri
WBGene00004187	prp-8	99	85.972	ENSTTRG00000006869	PRPF8	99	85.886	Tursiops_truncatus
WBGene00004187	prp-8	56	82.706	ENSUAMG00000015644	-	95	85.235	Ursus_americanus
WBGene00004187	prp-8	99	86.272	ENSUMAG00000009385	PRPF8	99	86.186	Ursus_maritimus
WBGene00004187	prp-8	67	93.103	ENSVPAG00000006063	-	67	93.103	Vicugna_pacos
WBGene00004187	prp-8	99	86.529	ENSVVUG00000021695	PRPF8	99	86.444	Vulpes_vulpes
WBGene00004187	prp-8	99	86.644	ENSXETG00000022259	prpf8	99	86.420	Xenopus_tropicalis
WBGene00004187	prp-8	99	86.894	ENSXCOG00000012775	prpf8	99	86.377	Xiphophorus_couchianus
WBGene00004187	prp-8	99	86.894	ENSXMAG00000008505	prpf8	99	86.377	Xiphophorus_maculatus