EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00004188 (Gene tree)
Gene ID: -
Gene Symbol: prp-21
Alias: Ceprp21
Full Name: Pre-RNA processing 21%3B Yeast PRP (Splicing factor) related
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 5538 bases
Position: chrII:484866-490403
Accession: G5ECL3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
W07E6	PRP21_like_P	PF12230.8	1.2e-37	1	1
W07E6	Surp	PF01805.20	6.5e-38	1	2
W07E6	Surp	PF01805.20	6.5e-38	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
W07E6.4	-	2095	NM_061345	W07E6.4	655 (aa)	NP_493746	G5ECL3

Gene Model

Click here to download WBGene00004188's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00004188's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00004188	prp-21	94	43.682	ENSG00000099995	SF3A1	84	43.447	Homo_sapiens
WBGene00004188	prp-21	59	50.508	ENSAPOG00000020465	sf3a1	80	46.124	Acanthochromis_polyacanthus
WBGene00004188	prp-21	90	44.867	ENSAMEG00000007737	SF3A1	84	43.447	Ailuropoda_melanoleuca
WBGene00004188	prp-21	59	51.525	ENSACIG00000020672	sf3a1	81	45.849	Amphilophus_citrinellus
WBGene00004188	prp-21	59	50.508	ENSAOCG00000003060	sf3a1	81	45.472	Amphiprion_ocellaris
WBGene00004188	prp-21	59	50.508	ENSAPEG00000010735	sf3a1	81	45.472	Amphiprion_percula
WBGene00004188	prp-21	57	52.313	ENSATEG00000021201	sf3a1	79	45.753	Anabas_testudineus
WBGene00004188	prp-21	88	45.010	ENSAPLG00000009057	SF3A1	85	44.708	Anas_platyrhynchos
WBGene00004188	prp-21	94	42.553	ENSACAG00000009415	SF3A1	79	44.860	Anolis_carolinensis
WBGene00004188	prp-21	94	43.321	ENSANAG00000032045	SF3A1	84	43.268	Aotus_nancymaae
WBGene00004188	prp-21	90	44.717	ENSACLG00000012622	sf3a1	82	45.558	Astatotilapia_calliptera
WBGene00004188	prp-21	59	50.000	ENSAMXG00000005382	sf3a1	84	43.470	Astyanax_mexicanus
WBGene00004188	prp-21	94	43.502	ENSBTAG00000003390	SF3A1	84	43.447	Bos_taurus
WBGene00004188	prp-21	94	43.321	ENSCJAG00000010370	SF3A1	84	43.268	Callithrix_jacchus
WBGene00004188	prp-21	90	44.867	ENSCAFG00000012559	SF3A1	84	43.447	Canis_familiaris
WBGene00004188	prp-21	90	44.867	ENSCAFG00020000838	SF3A1	84	43.447	Canis_lupus_dingo
WBGene00004188	prp-21	94	43.613	ENSCHIG00000018642	SF3A1	84	43.447	Capra_hircus
WBGene00004188	prp-21	94	43.682	ENSTSYG00000004739	SF3A1	84	43.627	Carlito_syrichta
WBGene00004188	prp-21	60	42.396	ENSCAPG00000015414	SF3A1	71	37.477	Cavia_aperea
WBGene00004188	prp-21	94	43.502	ENSCPOG00000014589	SF3A1	84	43.268	Cavia_porcellus
WBGene00004188	prp-21	94	43.321	ENSCCAG00000032006	SF3A1	84	43.268	Cebus_capucinus
WBGene00004188	prp-21	94	43.502	ENSCATG00000029241	SF3A1	84	43.447	Cercocebus_atys
WBGene00004188	prp-21	94	43.141	ENSCLAG00000006508	SF3A1	84	43.088	Chinchilla_lanigera
WBGene00004188	prp-21	94	43.502	ENSCSAG00000009470	SF3A1	84	43.447	Chlorocebus_sabaeus
WBGene00004188	prp-21	61	50.373	ENSCHOG00000005201	SF3A1	64	50.746	Choloepus_hoffmanni
WBGene00004188	prp-21	89	44.402	ENSCPBG00000007595	SF3A1	82	45.455	Chrysemys_picta_bellii
WBGene00004188	prp-21	90	44.355	ENSCING00000008526	-	84	43.750	Ciona_intestinalis
WBGene00004188	prp-21	91	50.534	ENSCSAVG00000005608	-	100	43.268	Ciona_savignyi
WBGene00004188	prp-21	94	43.502	ENSCANG00000033564	SF3A1	84	43.447	Colobus_angolensis_palliatus
WBGene00004188	prp-21	92	44.096	ENSCGRG00001008933	Sf3a1	84	43.806	Cricetulus_griseus_chok1gshd
WBGene00004188	prp-21	92	44.096	ENSCGRG00000006127	Sf3a1	84	43.806	Cricetulus_griseus_crigri
WBGene00004188	prp-21	90	43.750	ENSCSEG00000010792	sf3a1	84	45.009	Cynoglossus_semilaevis
WBGene00004188	prp-21	99	41.443	ENSCVAG00000004560	sf3a1	81	44.653	Cyprinodon_variegatus
WBGene00004188	prp-21	60	50.847	ENSDARG00000041887	sf3a1	95	48.485	Danio_rerio
WBGene00004188	prp-21	99	42.542	ENSDNOG00000010629	SF3A1	85	43.363	Dasypus_novemcinctus
WBGene00004188	prp-21	94	43.502	ENSDORG00000005613	Sf3a1	84	43.268	Dipodomys_ordii
WBGene00004188	prp-21	90	41.210	FBgn0266917	Sf3a1	84	42.478	Drosophila_melanogaster
WBGene00004188	prp-21	71	44.727	ENSETEG00000017194	SF3A1	77	43.278	Echinops_telfairi
WBGene00004188	prp-21	95	48.288	ENSEBUG00000001285	sf3a1	81	40.975	Eptatretus_burgeri
WBGene00004188	prp-21	94	43.502	ENSEASG00005010254	SF3A1	84	43.447	Equus_asinus_asinus
WBGene00004188	prp-21	94	43.502	ENSECAG00000023962	SF3A1	84	43.447	Equus_caballus
WBGene00004188	prp-21	67	43.326	ENSEEUG00000003159	SF3A1	73	41.892	Erinaceus_europaeus
WBGene00004188	prp-21	98	42.517	ENSELUG00000022578	sf3a1	80	46.124	Esox_lucius
WBGene00004188	prp-21	90	44.677	ENSFCAG00000011932	SF3A1	84	43.268	Felis_catus
WBGene00004188	prp-21	88	44.510	ENSFALG00000006944	SF3A1	83	44.241	Ficedula_albicollis
WBGene00004188	prp-21	94	43.321	ENSFDAG00000009560	SF3A1	84	43.268	Fukomys_damarensis
WBGene00004188	prp-21	90	44.045	ENSFHEG00000010866	sf3a1	80	45.349	Fundulus_heteroclitus
WBGene00004188	prp-21	98	38.853	ENSGMOG00000016024	sf3a1	88	42.905	Gadus_morhua
WBGene00004188	prp-21	88	45.098	ENSGALG00000007937	SF3A1	83	44.790	Gallus_gallus
WBGene00004188	prp-21	90	43.962	ENSGAFG00000009111	sf3a1	82	44.508	Gambusia_affinis
WBGene00004188	prp-21	59	50.342	ENSGACG00000011893	sf3a1	82	45.367	Gasterosteus_aculeatus
WBGene00004188	prp-21	82	44.639	ENSGAGG00000000762	SF3A1	79	45.841	Gopherus_agassizii
WBGene00004188	prp-21	94	43.682	ENSGGOG00000012631	SF3A1	84	43.447	Gorilla_gorilla
WBGene00004188	prp-21	99	42.450	ENSHBUG00000015795	sf3a1	82	45.558	Haplochromis_burtoni
WBGene00004188	prp-21	94	43.321	ENSHGLG00000007907	SF3A1	84	43.447	Heterocephalus_glaber_female
WBGene00004188	prp-21	94	43.321	ENSHGLG00100013799	SF3A1	84	43.447	Heterocephalus_glaber_male
WBGene00004188	prp-21	98	42.249	ENSHCOG00000015423	sf3a1	80	45.136	Hippocampus_comes
WBGene00004188	prp-21	100	42.289	ENSIPUG00000002470	sf3a1	83	45.269	Ictalurus_punctatus
WBGene00004188	prp-21	94	43.502	ENSSTOG00000013892	SF3A1	84	43.447	Ictidomys_tridecemlineatus
WBGene00004188	prp-21	94	43.321	ENSJJAG00000022566	Sf3a1	84	43.268	Jaculus_jaculus
WBGene00004188	prp-21	90	44.151	ENSKMAG00000002400	sf3a1	81	44.906	Kryptolebias_marmoratus
WBGene00004188	prp-21	57	51.429	ENSLBEG00000022974	sf3a1	80	45.331	Labrus_bergylta
WBGene00004188	prp-21	89	46.139	ENSLACG00000003565	SF3A1	81	45.833	Latimeria_chalumnae
WBGene00004188	prp-21	58	51.916	ENSLOCG00000008251	sf3a1	83	45.273	Lepisosteus_oculatus
WBGene00004188	prp-21	90	44.867	ENSLAFG00000000448	SF3A1	84	43.447	Loxodonta_africana
WBGene00004188	prp-21	77	31.985	ENSLAFG00000026032	-	70	32.169	Loxodonta_africana
WBGene00004188	prp-21	94	43.502	ENSMFAG00000031979	SF3A1	84	43.447	Macaca_fascicularis
WBGene00004188	prp-21	94	43.502	ENSMMUG00000005547	SF3A1	84	43.447	Macaca_mulatta
WBGene00004188	prp-21	94	43.502	ENSMNEG00000037229	SF3A1	84	43.447	Macaca_nemestrina
WBGene00004188	prp-21	94	43.502	ENSMLEG00000041908	SF3A1	84	43.447	Mandrillus_leucophaeus
WBGene00004188	prp-21	58	51.579	ENSMAMG00000006460	sf3a1	78	45.857	Mastacembelus_armatus
WBGene00004188	prp-21	90	44.717	ENSMZEG00005009633	sf3a1	82	45.558	Maylandia_zebra
WBGene00004188	prp-21	88	45.098	ENSMGAG00000001330	SF3A1	85	44.790	Meleagris_gallopavo
WBGene00004188	prp-21	84	41.071	ENSMAUG00000020317	Sf3a1	81	42.105	Mesocricetus_auratus
WBGene00004188	prp-21	94	43.863	ENSMICG00000010038	SF3A1	84	43.649	Microcebus_murinus
WBGene00004188	prp-21	94	43.682	ENSMOCG00000008438	Sf3a1	84	43.627	Microtus_ochrogaster
WBGene00004188	prp-21	58	50.735	ENSMMOG00000015588	sf3a1	79	45.562	Mola_mola
WBGene00004188	prp-21	90	44.762	ENSMODG00000009270	SF3A1	84	43.423	Monodelphis_domestica
WBGene00004188	prp-21	90	44.633	ENSMALG00000000148	sf3a1	81	45.611	Monopterus_albus
WBGene00004188	prp-21	90	44.847	MGP_CAROLIEiJ_G0016029	Sf3a1	84	43.423	Mus_caroli
WBGene00004188	prp-21	90	44.847	ENSMUSG00000002129	Sf3a1	84	43.423	Mus_musculus
WBGene00004188	prp-21	90	45.038	MGP_PahariEiJ_G0016862	Sf3a1	84	43.243	Mus_pahari
WBGene00004188	prp-21	90	44.847	MGP_SPRETEiJ_G0016870	Sf3a1	84	43.423	Mus_spretus
WBGene00004188	prp-21	94	43.502	ENSMPUG00000013144	SF3A1	84	43.447	Mustela_putorius_furo
WBGene00004188	prp-21	94	43.502	ENSMLUG00000002139	SF3A1	84	43.447	Myotis_lucifugus
WBGene00004188	prp-21	94	43.863	ENSNGAG00000016977	Sf3a1	84	43.627	Nannospalax_galili
WBGene00004188	prp-21	97	42.784	ENSNBRG00000016642	sf3a1	80	46.019	Neolamprologus_brichardi
WBGene00004188	prp-21	94	43.502	ENSNLEG00000003686	SF3A1	84	43.447	Nomascus_leucogenys
WBGene00004188	prp-21	53	48.797	ENSMEUG00000008741	SF3A1	83	42.370	Notamacropus_eugenii
WBGene00004188	prp-21	94	43.141	ENSOPRG00000016636	SF3A1	84	43.447	Ochotona_princeps
WBGene00004188	prp-21	94	43.038	ENSODEG00000002571	SF3A1	84	42.986	Octodon_degus
WBGene00004188	prp-21	59	51.027	ENSONIG00000010848	sf3a1	81	45.747	Oreochromis_niloticus
WBGene00004188	prp-21	94	43.682	ENSOCUG00000007633	SF3A1	84	43.627	Oryctolagus_cuniculus
WBGene00004188	prp-21	52	52.113	ENSORLG00000013050	sf3a1	82	44.689	Oryzias_latipes
WBGene00004188	prp-21	52	52.500	ENSORLG00020003236	sf3a1	78	44.689	Oryzias_latipes_hni
WBGene00004188	prp-21	59	51.195	ENSORLG00015017411	sf3a1	82	45.386	Oryzias_latipes_hsok
WBGene00004188	prp-21	59	51.536	ENSOMEG00000013362	sf3a1	81	45.644	Oryzias_melastigma
WBGene00004188	prp-21	94	43.682	ENSOGAG00000012931	SF3A1	84	43.627	Otolemur_garnettii
WBGene00004188	prp-21	94	42.287	ENSOARG00000006849	SF3A1	85	43.088	Ovis_aries
WBGene00004188	prp-21	94	43.682	ENSPPAG00000041790	SF3A1	84	43.447	Pan_paniscus
WBGene00004188	prp-21	90	44.677	ENSPPRG00000004391	SF3A1	84	43.268	Panthera_pardus
WBGene00004188	prp-21	90	44.677	ENSPTIG00000000844	SF3A1	87	43.268	Panthera_tigris_altaica
WBGene00004188	prp-21	94	43.682	ENSPTRG00000014240	SF3A1	84	43.447	Pan_troglodytes
WBGene00004188	prp-21	94	43.502	ENSPANG00000020772	SF3A1	84	43.447	Papio_anubis
WBGene00004188	prp-21	99	39.105	ENSPSIG00000012803	SF3A1	99	40.459	Pelodiscus_sinensis
WBGene00004188	prp-21	88	44.553	ENSPMGG00000023096	sf3a1	99	39.575	Periophthalmus_magnuspinnatus
WBGene00004188	prp-21	92	43.911	ENSPEMG00000009494	Sf3a1	84	43.627	Peromyscus_maniculatus_bairdii
WBGene00004188	prp-21	71	43.665	ENSPMAG00000007139	-	88	44.530	Petromyzon_marinus
WBGene00004188	prp-21	97	41.958	ENSPCIG00000022692	SF3A1	84	43.423	Phascolarctos_cinereus
WBGene00004188	prp-21	76	44.656	ENSPFOG00000016768	sf3a1	68	45.368	Poecilia_formosa
WBGene00004188	prp-21	90	44.151	ENSPLAG00000017268	sf3a1	81	44.717	Poecilia_latipinna
WBGene00004188	prp-21	76	44.630	ENSPMEG00000019811	sf3a1	78	45.346	Poecilia_mexicana
WBGene00004188	prp-21	90	44.151	ENSPREG00000010347	sf3a1	81	44.717	Poecilia_reticulata
WBGene00004188	prp-21	94	43.502	ENSPPYG00000011707	SF3A1	84	43.447	Pongo_abelii
WBGene00004188	prp-21	94	43.863	ENSPCOG00000026630	SF3A1	84	43.806	Propithecus_coquereli
WBGene00004188	prp-21	90	43.667	ENSPVAG00000017719	SF3A1	81	42.669	Pteropus_vampyrus
WBGene00004188	prp-21	59	51.020	ENSPNYG00000018706	sf3a1	82	45.369	Pundamilia_nyererei
WBGene00004188	prp-21	93	43.316	ENSPNAG00000003721	sf3a1	85	43.986	Pygocentrus_nattereri
WBGene00004188	prp-21	90	45.038	ENSRNOG00000005218	Sf3a1	84	43.423	Rattus_norvegicus
WBGene00004188	prp-21	94	43.321	ENSRBIG00000032167	SF3A1	84	43.088	Rhinopithecus_bieti
WBGene00004188	prp-21	94	43.321	ENSRROG00000044908	SF3A1	84	43.088	Rhinopithecus_roxellana
WBGene00004188	prp-21	89	42.747	ENSSBOG00000021960	SF3A1	84	43.172	Saimiri_boliviensis_boliviensis
WBGene00004188	prp-21	89	42.857	ENSSHAG00000003666	SF3A1	84	41.441	Sarcophilus_harrisii
WBGene00004188	prp-21	96	41.638	ENSSFOG00015004579	sf3a1	87	43.130	Scleropages_formosus
WBGene00004188	prp-21	58	51.773	ENSSMAG00000004275	sf3a1	83	46.109	Scophthalmus_maximus
WBGene00004188	prp-21	59	50.000	ENSSDUG00000022219	sf3a1	80	46.214	Seriola_dumerili
WBGene00004188	prp-21	59	50.000	ENSSLDG00000012642	sf3a1	80	46.214	Seriola_lalandi_dorsalis
WBGene00004188	prp-21	94	41.228	ENSSARG00000005960	SF3A1	86	41.228	Sorex_araneus
WBGene00004188	prp-21	88	45.312	ENSSPUG00000018863	SF3A1	82	45.055	Sphenodon_punctatus
WBGene00004188	prp-21	59	50.340	ENSSPAG00000011856	sf3a1	80	46.019	Stegastes_partitus
WBGene00004188	prp-21	94	43.502	ENSSSCG00000010002	SF3A1	84	43.447	Sus_scrofa
WBGene00004188	prp-21	88	45.098	ENSTGUG00000010547	SF3A1	85	44.790	Taeniopygia_guttata
WBGene00004188	prp-21	98	42.784	ENSTRUG00000006118	sf3a1	79	45.809	Takifugu_rubripes
WBGene00004188	prp-21	94	42.599	ENSTBEG00000012771	SF3A1	77	50.877	Tupaia_belangeri
WBGene00004188	prp-21	94	43.063	ENSTTRG00000001535	SF3A1	84	43.011	Tursiops_truncatus
WBGene00004188	prp-21	93	43.502	ENSUAMG00000006750	SF3A1	83	43.447	Ursus_americanus
WBGene00004188	prp-21	98	43.158	ENSUMAG00000016665	SF3A1	86	44.161	Ursus_maritimus
WBGene00004188	prp-21	90	44.867	ENSVVUG00000003075	SF3A1	84	43.447	Vulpes_vulpes
WBGene00004188	prp-21	88	43.275	ENSXETG00000016144	sf3a1	87	48.649	Xenopus_tropicalis
WBGene00004188	prp-21	90	43.585	ENSXCOG00000015653	sf3a1	82	44.129	Xiphophorus_couchianus
WBGene00004188	prp-21	90	44.444	ENSXMAG00000002753	sf3a1	82	44.318	Xiphophorus_maculatus