EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00004248 (Gene tree)
Gene ID: -
Gene Symbol: pus-1
Alias: -
Full Name: tRNA pseudouridine synthase
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Minus strand
Length: 2244 bases
Position: chrV:16792764-16795007
Accession: Q9XXN0
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
W06H3	PseudoU_synth_1	PF01416.20	6.4e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
W06H3.2b	-	491	NM_001129556	W06H3.2b	137 (aa)	NP_001123028	B1V8I7
W06H3.2a	-	1382	NM_074841	W06H3.2a	415 (aa)	NP_507242	Q9XXN0

Gene Model

Click here to download WBGene00004248's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00004248's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00004248	pus-1	83	39.143	ENSG00000177192	PUS1	87	39.143	Homo_sapiens
WBGene00004248	pus-1	87	38.251	ENSAPOG00000007254	pus1	84	38.251	Acanthochromis_polyacanthus
WBGene00004248	pus-1	81	39.535	ENSAMEG00000013715	PUS1	81	39.535	Ailuropoda_melanoleuca
WBGene00004248	pus-1	87	38.544	ENSACIG00000009169	pus1	87	38.275	Amphilophus_citrinellus
WBGene00004248	pus-1	86	38.904	ENSAOCG00000022207	pus1	80	38.904	Amphiprion_ocellaris
WBGene00004248	pus-1	86	38.904	ENSAPEG00000006039	pus1	86	38.904	Amphiprion_percula
WBGene00004248	pus-1	82	38.329	ENSATEG00000020688	pus1	84	39.255	Anabas_testudineus
WBGene00004248	pus-1	80	37.313	ENSACAG00000007367	PUS1	87	39.169	Anolis_carolinensis
WBGene00004248	pus-1	73	40.260	ENSANAG00000036192	PUS1	90	40.260	Aotus_nancymaae
WBGene00004248	pus-1	85	38.719	ENSACLG00000020868	pus1	89	38.719	Astatotilapia_calliptera
WBGene00004248	pus-1	81	39.244	ENSAMXG00000008710	pus1	77	39.244	Astyanax_mexicanus
WBGene00004248	pus-1	86	37.673	ENSBTAG00000012990	PUS1	86	37.673	Bos_taurus
WBGene00004248	pus-1	69	37.801	ENSCJAG00000003720	PUS1	71	40.364	Callithrix_jacchus
WBGene00004248	pus-1	82	38.617	ENSCAFG00000006429	PUS1	83	38.617	Canis_familiaris
WBGene00004248	pus-1	82	38.617	ENSCAFG00020010737	PUS1	76	38.617	Canis_lupus_dingo
WBGene00004248	pus-1	86	37.950	ENSCHIG00000000487	PUS1	86	37.950	Capra_hircus
WBGene00004248	pus-1	84	37.640	ENSTSYG00000032605	PUS1	94	37.950	Carlito_syrichta
WBGene00004248	pus-1	72	39.404	ENSCAPG00000006421	PUS1	92	39.871	Cavia_aperea
WBGene00004248	pus-1	85	37.778	ENSCPOG00000001027	PUS1	88	33.884	Cavia_porcellus
WBGene00004248	pus-1	82	38.329	ENSCCAG00000015879	PUS1	82	39.935	Cebus_capucinus
WBGene00004248	pus-1	81	38.596	ENSCATG00000032870	PUS1	80	39.869	Cercocebus_atys
WBGene00004248	pus-1	85	36.695	ENSCLAG00000011689	PUS1	87	32.778	Chinchilla_lanigera
WBGene00004248	pus-1	81	38.596	ENSCSAG00000001879	PUS1	77	38.596	Chlorocebus_sabaeus
WBGene00004248	pus-1	73	38.889	ENSCPBG00000024715	PUS1	84	40.909	Chrysemys_picta_bellii
WBGene00004248	pus-1	80	36.905	ENSCING00000009426	-	86	36.905	Ciona_intestinalis
WBGene00004248	pus-1	80	37.574	ENSCSAVG00000003751	-	67	37.574	Ciona_savignyi
WBGene00004248	pus-1	83	34.857	ENSCANG00000035561	PUS1	80	37.582	Colobus_angolensis_palliatus
WBGene00004248	pus-1	86	37.950	ENSCGRG00001019592	Pus1	82	37.950	Cricetulus_griseus_chok1gshd
WBGene00004248	pus-1	86	37.950	ENSCGRG00000004048	Pus1	82	38.576	Cricetulus_griseus_crigri
WBGene00004248	pus-1	88	37.368	ENSCSEG00000003629	pus1	85	37.333	Cynoglossus_semilaevis
WBGene00004248	pus-1	83	40.057	ENSCVAG00000001265	pus1	80	40.057	Cyprinodon_variegatus
WBGene00004248	pus-1	83	37.714	ENSDARG00000045562	pus1	97	38.028	Danio_rerio
WBGene00004248	pus-1	82	39.655	ENSDNOG00000045576	PUS1	90	40.584	Dasypus_novemcinctus
WBGene00004248	pus-1	80	38.138	ENSDORG00000011455	Pus1	90	39.286	Dipodomys_ordii
WBGene00004248	pus-1	84	41.176	FBgn0038811	PUS1	83	41.176	Drosophila_melanogaster
WBGene00004248	pus-1	80	38.757	ENSETEG00000019160	PUS1	81	38.953	Echinops_telfairi
WBGene00004248	pus-1	79	35.493	ENSEBUG00000000368	-	65	35.262	Eptatretus_burgeri
WBGene00004248	pus-1	86	37.190	ENSEASG00005016535	PUS1	81	37.190	Equus_asinus_asinus
WBGene00004248	pus-1	86	37.466	ENSECAG00000006965	PUS1	88	37.466	Equus_caballus
WBGene00004248	pus-1	82	39.542	ENSELUG00000010424	pus1	84	39.542	Esox_lucius
WBGene00004248	pus-1	86	39.503	ENSFCAG00000010780	PUS1	81	39.503	Felis_catus
WBGene00004248	pus-1	81	39.474	ENSFALG00000008273	PUS1	77	39.474	Ficedula_albicollis
WBGene00004248	pus-1	82	37.464	ENSFDAG00000012518	PUS1	81	37.464	Fukomys_damarensis
WBGene00004248	pus-1	85	38.440	ENSFHEG00000010504	pus1	84	38.440	Fundulus_heteroclitus
WBGene00004248	pus-1	88	39.037	ENSGMOG00000008143	pus1	91	39.037	Gadus_morhua
WBGene00004248	pus-1	83	38.286	ENSGALG00000002354	PUS1	83	40.341	Gallus_gallus
WBGene00004248	pus-1	85	37.989	ENSGAFG00000006578	pus1	82	37.989	Gambusia_affinis
WBGene00004248	pus-1	83	39.205	ENSGACG00000017566	pus1	90	35.530	Gasterosteus_aculeatus
WBGene00004248	pus-1	74	39.617	ENSGAGG00000016730	-	87	41.587	Gopherus_agassizii
WBGene00004248	pus-1	81	39.181	ENSGGOG00000009178	PUS1	78	40.523	Gorilla_gorilla
WBGene00004248	pus-1	85	38.997	ENSHBUG00000001316	pus1	88	38.997	Haplochromis_burtoni
WBGene00004248	pus-1	86	36.088	ENSHGLG00000016086	PUS1	89	36.088	Heterocephalus_glaber_female
WBGene00004248	pus-1	86	35.813	ENSHGLG00100019362	PUS1	89	35.813	Heterocephalus_glaber_male
WBGene00004248	pus-1	87	38.544	ENSHCOG00000014288	pus1	82	38.544	Hippocampus_comes
WBGene00004248	pus-1	83	37.714	ENSIPUG00000010387	pus1	84	38.081	Ictalurus_punctatus
WBGene00004248	pus-1	82	38.793	ENSSTOG00000011245	PUS1	79	38.793	Ictidomys_tridecemlineatus
WBGene00004248	pus-1	92	36.829	ENSJJAG00000000088	Pus1	86	34.540	Jaculus_jaculus
WBGene00004248	pus-1	86	38.674	ENSKMAG00000012702	pus1	82	38.674	Kryptolebias_marmoratus
WBGene00004248	pus-1	87	37.772	ENSLBEG00000002845	pus1	88	38.378	Labrus_bergylta
WBGene00004248	pus-1	80	37.500	ENSLACG00000016044	-	98	37.500	Latimeria_chalumnae
WBGene00004248	pus-1	81	39.766	ENSLACG00000018598	PUS1	82	39.766	Latimeria_chalumnae
WBGene00004248	pus-1	79	40.299	ENSLOCG00000006127	pus1	81	40.299	Lepisosteus_oculatus
WBGene00004248	pus-1	81	38.663	ENSLAFG00000028731	PUS1	89	38.663	Loxodonta_africana
WBGene00004248	pus-1	81	38.663	ENSMFAG00000041194	PUS1	82	38.663	Macaca_fascicularis
WBGene00004248	pus-1	81	38.596	ENSMMUG00000031463	PUS1	84	39.869	Macaca_mulatta
WBGene00004248	pus-1	81	38.596	ENSMNEG00000002814	PUS1	80	39.869	Macaca_nemestrina
WBGene00004248	pus-1	73	39.869	ENSMLEG00000043560	PUS1	90	39.869	Mandrillus_leucophaeus
WBGene00004248	pus-1	83	38.746	ENSMAMG00000007371	pus1	80	38.746	Mastacembelus_armatus
WBGene00004248	pus-1	85	38.997	ENSMZEG00005017746	pus1	82	38.997	Maylandia_zebra
WBGene00004248	pus-1	75	39.297	ENSMGAG00000001958	PUS1	92	41.587	Meleagris_gallopavo
WBGene00004248	pus-1	86	37.190	ENSMAUG00000001482	Pus1	87	33.333	Mesocricetus_auratus
WBGene00004248	pus-1	85	38.440	ENSMICG00000030980	PUS1	83	39.130	Microcebus_murinus
WBGene00004248	pus-1	82	38.040	ENSMOCG00000022311	Pus1	79	38.040	Microtus_ochrogaster
WBGene00004248	pus-1	81	40.000	ENSMMOG00000021022	pus1	84	40.000	Mola_mola
WBGene00004248	pus-1	78	39.640	ENSMODG00000015551	PUS1	72	39.053	Monodelphis_domestica
WBGene00004248	pus-1	84	37.784	ENSMALG00000013202	pus1	82	38.746	Monopterus_albus
WBGene00004248	pus-1	82	38.040	MGP_CAROLIEiJ_G0027551	Pus1	85	38.040	Mus_caroli
WBGene00004248	pus-1	82	38.040	ENSMUSG00000029507	Pus1	85	38.040	Mus_musculus
WBGene00004248	pus-1	82	38.040	MGP_PahariEiJ_G0024133	Pus1	85	38.040	Mus_pahari
WBGene00004248	pus-1	82	38.040	MGP_SPRETEiJ_G0028549	Pus1	85	38.040	Mus_spretus
WBGene00004248	pus-1	83	38.395	ENSMPUG00000002314	PUS1	85	38.395	Mustela_putorius_furo
WBGene00004248	pus-1	82	37.101	ENSMLUG00000015790	PUS1	91	37.101	Myotis_lucifugus
WBGene00004248	pus-1	83	38.109	ENSNGAG00000012976	Pus1	83	34.393	Nannospalax_galili
WBGene00004248	pus-1	87	38.753	ENSNBRG00000020502	pus1	95	38.753	Neolamprologus_brichardi
WBGene00004248	pus-1	83	38.905	ENSNLEG00000008505	PUS1	92	39.869	Nomascus_leucogenys
WBGene00004248	pus-1	79	36.826	ENSMEUG00000002825	PUS1	87	36.826	Notamacropus_eugenii
WBGene00004248	pus-1	80	35.398	ENSOPRG00000002701	-	86	35.398	Ochotona_princeps
WBGene00004248	pus-1	86	36.915	ENSODEG00000008248	PUS1	91	36.915	Octodon_degus
WBGene00004248	pus-1	85	38.187	ENSONIG00000003803	pus1	88	38.187	Oreochromis_niloticus
WBGene00004248	pus-1	81	39.420	ENSOANG00000010619	PUS1	76	39.420	Ornithorhynchus_anatinus
WBGene00004248	pus-1	95	36.765	ENSOCUG00000007310	PUS1	73	38.636	Oryctolagus_cuniculus
WBGene00004248	pus-1	81	39.826	ENSORLG00000010787	pus1	78	39.826	Oryzias_latipes
WBGene00004248	pus-1	81	39.826	ENSORLG00020011483	pus1	78	39.826	Oryzias_latipes_hni
WBGene00004248	pus-1	81	39.826	ENSORLG00015023012	pus1	83	39.826	Oryzias_latipes_hsok
WBGene00004248	pus-1	84	40.000	ENSOMEG00000022655	pus1	79	40.000	Oryzias_melastigma
WBGene00004248	pus-1	81	39.359	ENSOGAG00000008720	PUS1	87	39.655	Otolemur_garnettii
WBGene00004248	pus-1	86	38.227	ENSOARG00000013316	PUS1	79	38.227	Ovis_aries
WBGene00004248	pus-1	83	38.571	ENSPPAG00000040971	PUS1	78	39.869	Pan_paniscus
WBGene00004248	pus-1	86	39.503	ENSPPRG00000015456	PUS1	87	39.503	Panthera_pardus
WBGene00004248	pus-1	84	39.326	ENSPTIG00000004201	PUS1	89	39.503	Panthera_tigris_altaica
WBGene00004248	pus-1	82	38.506	ENSPTRG00000005643	PUS1	78	39.803	Pan_troglodytes
WBGene00004248	pus-1	80	38.529	ENSPANG00000000376	PUS1	80	39.803	Papio_anubis
WBGene00004248	pus-1	87	38.211	ENSPKIG00000019369	pus1	77	38.504	Paramormyrops_kingsleyae
WBGene00004248	pus-1	81	38.372	ENSPSIG00000016432	PUS1	77	40.462	Pelodiscus_sinensis
WBGene00004248	pus-1	83	39.143	ENSPMGG00000004522	pus1	87	39.143	Periophthalmus_magnuspinnatus
WBGene00004248	pus-1	82	38.329	ENSPEMG00000013448	Pus1	79	38.329	Peromyscus_maniculatus_bairdii
WBGene00004248	pus-1	81	39.359	ENSPMAG00000004636	pus1	98	39.359	Petromyzon_marinus
WBGene00004248	pus-1	73	38.585	ENSPCIG00000022609	-	70	38.585	Phascolarctos_cinereus
WBGene00004248	pus-1	85	38.268	ENSPFOG00000019669	pus1	82	38.268	Poecilia_formosa
WBGene00004248	pus-1	85	38.547	ENSPLAG00000007185	pus1	82	38.547	Poecilia_latipinna
WBGene00004248	pus-1	85	38.547	ENSPLAG00000002692	-	82	38.547	Poecilia_latipinna
WBGene00004248	pus-1	85	37.640	ENSPMEG00000006038	pus1	85	38.547	Poecilia_mexicana
WBGene00004248	pus-1	85	37.640	ENSPMEG00000011115	PUS1	83	38.547	Poecilia_mexicana
WBGene00004248	pus-1	85	38.268	ENSPREG00000007231	pus1	96	38.056	Poecilia_reticulata
WBGene00004248	pus-1	82	38.218	ENSPPYG00000005132	PUS1	79	38.218	Pongo_abelii
WBGene00004248	pus-1	57	42.324	ENSPCAG00000009110	-	57	42.324	Procavia_capensis
WBGene00004248	pus-1	78	36.170	ENSPCOG00000015595	PUS1	82	35.632	Propithecus_coquereli
WBGene00004248	pus-1	85	38.719	ENSPNYG00000013571	pus1	82	38.719	Pundamilia_nyererei
WBGene00004248	pus-1	81	40.346	ENSPNAG00000003938	pus1	78	39.826	Pygocentrus_nattereri
WBGene00004248	pus-1	82	38.040	ENSRNOG00000037500	Pus1	79	38.040	Rattus_norvegicus
WBGene00004248	pus-1	83	38.571	ENSRBIG00000043177	PUS1	84	38.571	Rhinopithecus_bieti
WBGene00004248	pus-1	83	38.286	ENSRROG00000039744	PUS1	78	40.288	Rhinopithecus_roxellana
WBGene00004248	pus-1	67	36.641	YPL212C	-	56	36.641	Saccharomyces_cerevisiae
WBGene00004248	pus-1	83	38.286	ENSSBOG00000023593	PUS1	84	39.542	Saimiri_boliviensis_boliviensis
WBGene00004248	pus-1	80	40.000	ENSSHAG00000013193	PUS1	79	40.000	Sarcophilus_harrisii
WBGene00004248	pus-1	79	40.361	ENSSFOG00015003463	pus1	73	40.361	Scleropages_formosus
WBGene00004248	pus-1	83	40.171	ENSSMAG00000019075	pus1	80	40.171	Scophthalmus_maximus
WBGene00004248	pus-1	87	37.838	ENSSDUG00000007102	pus1	85	38.710	Seriola_dumerili
WBGene00004248	pus-1	87	37.568	ENSSLDG00000022850	pus1	85	38.441	Seriola_lalandi_dorsalis
WBGene00004248	pus-1	74	35.922	ENSSARG00000008367	PUS1	96	35.922	Sorex_araneus
WBGene00004248	pus-1	80	40.000	ENSSPUG00000010009	PUS1	82	40.000	Sphenodon_punctatus
WBGene00004248	pus-1	86	38.187	ENSSPAG00000006272	pus1	83	38.953	Stegastes_partitus
WBGene00004248	pus-1	85	37.778	ENSSSCG00000009741	PUS1	86	37.778	Sus_scrofa
WBGene00004248	pus-1	81	37.353	ENSTGUG00000008068	PUS1	99	39.474	Taeniopygia_guttata
WBGene00004248	pus-1	87	37.398	ENSTRUG00000002198	pus1	89	38.251	Takifugu_rubripes
WBGene00004248	pus-1	80	40.118	ENSTNIG00000003942	pus1	83	40.413	Tetraodon_nigroviridis
WBGene00004248	pus-1	86	38.122	ENSTTRG00000000632	PUS1	81	38.122	Tursiops_truncatus
WBGene00004248	pus-1	86	38.398	ENSUAMG00000017197	PUS1	87	38.398	Ursus_americanus
WBGene00004248	pus-1	86	38.122	ENSUMAG00000002831	PUS1	98	38.872	Ursus_maritimus
WBGene00004248	pus-1	82	38.728	ENSVVUG00000004199	PUS1	76	38.728	Vulpes_vulpes
WBGene00004248	pus-1	81	41.108	ENSXETG00000002030	pus1	81	41.108	Xenopus_tropicalis
WBGene00004248	pus-1	79	36.310	ENSXETG00000033640	-	100	36.499	Xenopus_tropicalis
WBGene00004248	pus-1	85	38.268	ENSXCOG00000004722	pus1	89	38.268	Xiphophorus_couchianus
WBGene00004248	pus-1	85	38.268	ENSXMAG00000000988	pus1	82	38.268	Xiphophorus_maculatus