EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00004271 (Gene tree)
Gene ID: -
Gene Symbol: rab-7
Alias: -
Full Name: RAB family
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Minus strand
Length: 1593 bases
Position: chrII:11965339-11966931
Accession: Q23146
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
W03C9	MMR_HSR1	PF01926.23	4.6e-07	1	1
W03C9	MMR_HSR1	PF01926.23	4.6e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
W03C9.3.2	-	975	-	W03C9.3.2	209 (aa)	-	I7FN66
W03C9.3.1	-	791	NM_064148	W03C9.3.1	209 (aa)	NP_496549	I7FN66

Gene Model

Click here to download WBGene00004271's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00004271's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00004271	rab-7	95	30.808	WBGene00004279	rab-21	87	31.720
WBGene00004271	rab-7	91	37.173	WBGene00006833	unc-108	79	40.230
WBGene00004271	rab-7	96	36.453	WBGene00004270	rab-6.2	77	39.877
WBGene00004271	rab-7	88	31.694	WBGene00004275	rab-11.2	89	31.694
WBGene00004271	rab-7	78	37.423	WBGene00004274	rab-11.1	75	37.423
WBGene00004271	rab-7	86	35.000	WBGene00004277	rab-18	86	35.000
WBGene00004271	rab-7	79	38.788	WBGene00004276	rab-14	76	38.788
WBGene00004271	rab-7	76	35.220	WBGene00004309	rap-3	74	35.220
WBGene00004271	rab-7	80	31.737	WBGene00002335	let-60	93	33.146
WBGene00004271	rab-7	96	37.500	WBGene00004269	rab-6.1	94	37.500
WBGene00004271	rab-7	95	36.453	WBGene00004266	rab-1	80	39.412
WBGene00004271	rab-7	98	32.367	WBGene00007067	4R79.2	56	35.196
WBGene00004271	rab-7	75	33.544	WBGene00022177	Y71H2AM.12	81	33.537
WBGene00004271	rab-7	98	36.585	WBGene00004268	rab-5	80	39.181
WBGene00004271	rab-7	85	41.573	WBGene00004284	rab-35	80	42.197
WBGene00004271	rab-7	80	31.953	WBGene00004286	rab-39	73	31.953
WBGene00004271	rab-7	79	37.349	WBGene00004282	rab-30	75	37.349

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00004271	rab-7	100	51.196	ENSACIG00000011024	si:dkey-13a21.4	89	56.284	Amphilophus_citrinellus
WBGene00004271	rab-7	100	52.153	ENSAOCG00000020491	si:dkey-13a21.4	89	57.377	Amphiprion_ocellaris
WBGene00004271	rab-7	100	51.675	ENSAPEG00000023338	si:dkey-13a21.4	82	56.831	Amphiprion_percula
WBGene00004271	rab-7	100	48.804	ENSATEG00000014958	si:dkey-13a21.4	89	53.552	Anabas_testudineus
WBGene00004271	rab-7	98	47.059	ENSACAG00000012345	-	99	47.059	Anolis_carolinensis
WBGene00004271	rab-7	100	51.196	ENSACLG00000021109	si:dkey-13a21.4	88	56.284	Astatotilapia_calliptera
WBGene00004271	rab-7	100	47.222	ENSAMXG00000032663	si:dkey-13a21.4	82	53.073	Astyanax_mexicanus
WBGene00004271	rab-7	100	50.239	ENSCVAG00000001150	si:dkey-13a21.4	89	55.191	Cyprinodon_variegatus
WBGene00004271	rab-7	80	56.287	ENSDARG00000026098	si:dkey-13a21.4	80	56.287	Danio_rerio
WBGene00004271	rab-7	82	50.857	ENSDNOG00000043559	-	88	49.457	Dasypus_novemcinctus
WBGene00004271	rab-7	99	49.275	ENSFHEG00000002502	si:dkey-13a21.4	87	54.144	Fundulus_heteroclitus
WBGene00004271	rab-7	100	48.804	ENSGAFG00000020102	si:dkey-13a21.4	89	53.552	Gambusia_affinis
WBGene00004271	rab-7	100	51.675	ENSHBUG00000014023	si:dkey-13a21.4	88	56.831	Haplochromis_burtoni
WBGene00004271	rab-7	84	56.818	ENSKMAG00000021039	si:dkey-13a21.4	73	56.818	Kryptolebias_marmoratus
WBGene00004271	rab-7	98	49.510	ENSLBEG00000018180	si:dkey-13a21.4	87	54.494	Labrus_bergylta
WBGene00004271	rab-7	98	56.585	ENSLOCG00000014749	si:dkey-13a21.4	82	64.327	Lepisosteus_oculatus
WBGene00004271	rab-7	96	48.756	ENSLAFG00000028984	-	96	48.756	Loxodonta_africana
WBGene00004271	rab-7	100	51.196	ENSMAMG00000021095	si:dkey-13a21.4	89	56.284	Mastacembelus_armatus
WBGene00004271	rab-7	100	51.196	ENSMZEG00005010220	si:dkey-13a21.4	88	56.284	Maylandia_zebra
WBGene00004271	rab-7	96	54.500	ENSNBRG00000023214	si:dkey-13a21.4	83	60.345	Neolamprologus_brichardi
WBGene00004271	rab-7	100	52.857	ENSONIG00000020296	si:dkey-13a21.4	89	58.152	Oreochromis_niloticus
WBGene00004271	rab-7	100	48.804	ENSORLG00000025098	si:dkey-13a21.4	89	53.552	Oryzias_latipes
WBGene00004271	rab-7	88	53.005	ENSORLG00020019465	si:dkey-13a21.4	89	53.005	Oryzias_latipes_hni
WBGene00004271	rab-7	88	53.552	ENSORLG00015015121	si:dkey-13a21.4	89	53.552	Oryzias_latipes_hsok
WBGene00004271	rab-7	85	57.062	ENSPKIG00000008691	si:dkey-13a21.4	85	57.062	Paramormyrops_kingsleyae
WBGene00004271	rab-7	93	50.515	ENSPMGG00000023170	si:dkey-13a21.4	84	54.749	Periophthalmus_magnuspinnatus
WBGene00004271	rab-7	100	48.325	ENSPFOG00000015409	si:dkey-13a21.4	89	53.005	Poecilia_formosa
WBGene00004271	rab-7	100	48.325	ENSPLAG00000019688	si:dkey-13a21.4	89	53.005	Poecilia_latipinna
WBGene00004271	rab-7	100	48.325	ENSPMEG00000019159	si:dkey-13a21.4	89	53.005	Poecilia_mexicana
WBGene00004271	rab-7	100	47.847	ENSPREG00000022241	si:dkey-13a21.4	89	52.459	Poecilia_reticulata
WBGene00004271	rab-7	100	51.196	ENSPNYG00000018613	si:dkey-13a21.4	88	56.284	Pundamilia_nyererei
WBGene00004271	rab-7	99	57.895	YML001W	YPT7	94	60.513	Saccharomyces_cerevisiae
WBGene00004271	rab-7	86	55.866	ENSSFOG00015009566	si:dkey-13a21.4	87	55.866	Scleropages_formosus
WBGene00004271	rab-7	96	53.000	ENSSMAG00000013945	si:dkey-13a21.4	83	58.621	Scophthalmus_maximus
WBGene00004271	rab-7	100	51.675	ENSSDUG00000019738	si:dkey-13a21.4	89	56.831	Seriola_dumerili
WBGene00004271	rab-7	96	53.500	ENSSLDG00000011597	si:dkey-13a21.4	89	56.831	Seriola_lalandi_dorsalis
WBGene00004271	rab-7	96	50.000	ENSXETG00000014257	mgc75872	87	54.098	Xenopus_tropicalis