EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00004286 (Gene tree)
Gene ID: -
Gene Symbol: rab-39
Alias: -
Full Name: RAB family
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Minus strand
Length: 1059 bases
Position: chrII:9321858-9322916
Accession: Q18969
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
D2013	MMR_HSR1	PF01926.23	1.8e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
D2013.1	-	907	NM_063583	D2013.1	229 (aa)	NP_495984	Q18969

Gene Model

Click here to download WBGene00004286's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00004286's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00004286	rab-39	86	44.162	WBGene00006833	unc-108	99	42.130
WBGene00004286	rab-39	75	35.429	WBGene00007067	4R79.2	55	35.429
WBGene00004286	rab-39	73	32.738	WBGene00004279	rab-21	79	32.738
WBGene00004286	rab-39	73	30.952	WBGene00004309	rap-3	79	30.952
WBGene00004286	rab-39	77	39.205	WBGene00004277	rab-18	99	35.268
WBGene00004286	rab-39	94	38.426	WBGene00004276	rab-14	97	38.426
WBGene00004286	rab-39	77	41.477	WBGene00004274	rab-11.1	81	41.477
WBGene00004286	rab-39	73	31.953	WBGene00004271	rab-7	80	31.953
WBGene00004286	rab-39	81	37.433	WBGene00004270	rab-6.2	88	37.433
WBGene00004286	rab-39	79	37.705	WBGene00019317	K02E10.1	81	37.705
WBGene00004286	rab-39	73	32.143	WBGene00002335	let-60	88	32.143
WBGene00004286	rab-39	94	38.182	WBGene00004266	rab-1	97	38.182
WBGene00004286	rab-39	95	34.101	WBGene00004268	rab-5	93	34.101
WBGene00004286	rab-39	72	37.195	WBGene00004269	rab-6.1	78	37.195
WBGene00004286	rab-39	75	41.860	WBGene00004284	rab-35	78	41.860
WBGene00004286	rab-39	78	37.989	WBGene00004275	rab-11.2	87	37.989
WBGene00004286	rab-39	75	33.526	WBGene00004282	rab-30	78	33.526

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00004286	rab-39	90	51.691	ENSCSAVG00000008684	-	97	51.691	Ciona_savignyi
WBGene00004286	rab-39	87	57.635	FBgn0029959	Rab39	92	57.635	Drosophila_melanogaster
WBGene00004286	rab-39	86	48.731	ENSEBUG00000004971	-	89	48.731	Eptatretus_burgeri