EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00004298 (Gene tree)
Gene ID: -
Gene Symbol: rad-54
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 5178 bases
Position: chrI:9065087-9070264
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
W06D4	ResIII	PF04851.15	8.9e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
W06D4.6	-	2664	NM_060037	W06D4.6	818 (aa)	NP_492438	G5EEN6

Gene Model

Click here to download WBGene00004298's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00004298's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00004298	rad-54	67	36.299	WBGene00013792	Y116A8C.13	72	36.590

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00004298	rad-54	82	58.382	ENSG00000085999	RAD54L	94	78.125	Homo_sapiens
WBGene00004298	rad-54	84	55.988	ENSAPOG00000011643	rad54l	93	55.988	Acanthochromis_polyacanthus
WBGene00004298	rad-54	84	58.393	ENSAMEG00000013902	RAD54L	93	58.393	Ailuropoda_melanoleuca
WBGene00004298	rad-54	83	58.651	ENSACIG00000001939	rad54l	91	58.651	Amphilophus_citrinellus
WBGene00004298	rad-54	84	58.009	ENSAOCG00000017576	rad54l	93	58.009	Amphiprion_ocellaris
WBGene00004298	rad-54	84	57.864	ENSAPEG00000020658	rad54l	95	57.864	Amphiprion_percula
WBGene00004298	rad-54	82	60.386	ENSATEG00000006767	rad54l	95	60.386	Anabas_testudineus
WBGene00004298	rad-54	82	59.440	ENSAPLG00000006389	RAD54L	96	60.324	Anas_platyrhynchos
WBGene00004298	rad-54	84	58.561	ENSACAG00000002312	RAD54L	93	58.561	Anolis_carolinensis
WBGene00004298	rad-54	82	58.382	ENSANAG00000035439	RAD54L	90	58.382	Aotus_nancymaae
WBGene00004298	rad-54	87	57.843	ENSACLG00000018711	rad54l	99	56.685	Astatotilapia_calliptera
WBGene00004298	rad-54	84	57.431	ENSAMXG00000012777	rad54l	93	58.297	Astyanax_mexicanus
WBGene00004298	rad-54	84	58.680	ENSBTAG00000019901	RAD54L	92	58.680	Bos_taurus
WBGene00004298	rad-54	78	59.196	ENSCJAG00000021080	RAD54L	82	59.196	Callithrix_jacchus
WBGene00004298	rad-54	84	58.250	ENSCAFG00000004272	RAD54L	93	58.250	Canis_familiaris
WBGene00004298	rad-54	84	58.250	ENSCAFG00020015066	RAD54L	93	58.250	Canis_lupus_dingo
WBGene00004298	rad-54	84	58.537	ENSCHIG00000020118	RAD54L	92	58.537	Capra_hircus
WBGene00004298	rad-54	84	57.963	ENSTSYG00000002032	RAD54L	93	57.963	Carlito_syrichta
WBGene00004298	rad-54	92	55.526	ENSCPOG00000006768	RAD54L	99	55.526	Cavia_porcellus
WBGene00004298	rad-54	82	58.529	ENSCCAG00000025783	RAD54L	90	58.529	Cebus_capucinus
WBGene00004298	rad-54	82	58.529	ENSCATG00000030589	RAD54L	90	58.529	Cercocebus_atys
WBGene00004298	rad-54	84	58.393	ENSCLAG00000004645	RAD54L	93	58.393	Chinchilla_lanigera
WBGene00004298	rad-54	82	58.529	ENSCSAG00000001229	RAD54L	90	58.529	Chlorocebus_sabaeus
WBGene00004298	rad-54	84	59.137	ENSCPBG00000005675	RAD54L	93	59.137	Chrysemys_picta_bellii
WBGene00004298	rad-54	89	55.256	ENSCING00000024456	-	95	55.256	Ciona_intestinalis
WBGene00004298	rad-54	82	57.184	ENSCSAVG00000010859	-	88	57.184	Ciona_savignyi
WBGene00004298	rad-54	82	58.529	ENSCANG00000034891	RAD54L	90	58.529	Colobus_angolensis_palliatus
WBGene00004298	rad-54	84	57.676	ENSCGRG00001014807	Rad54l	93	57.676	Cricetulus_griseus_chok1gshd
WBGene00004298	rad-54	84	57.676	ENSCGRG00000016038	Rad54l	93	57.676	Cricetulus_griseus_crigri
WBGene00004298	rad-54	83	59.765	ENSCSEG00000001983	rad54l	94	59.765	Cynoglossus_semilaevis
WBGene00004298	rad-54	73	65.432	ENSCVAG00000019561	rad54l	99	65.432	Cyprinodon_variegatus
WBGene00004298	rad-54	84	57.864	ENSDARG00000018623	rad54l	93	57.864	Danio_rerio
WBGene00004298	rad-54	86	57.223	ENSDNOG00000003395	RAD54L	95	57.223	Dasypus_novemcinctus
WBGene00004298	rad-54	82	54.815	ENSDORG00000002632	Rad54l	90	54.815	Dipodomys_ordii
WBGene00004298	rad-54	86	52.735	FBgn0002989	okr	88	52.735	Drosophila_melanogaster
WBGene00004298	rad-54	64	56.763	ENSETEG00000000550	RAD54L	70	56.763	Echinops_telfairi
WBGene00004298	rad-54	84	58.393	ENSEASG00005004511	RAD54L	95	59.138	Equus_asinus_asinus
WBGene00004298	rad-54	84	58.537	ENSECAG00000008760	RAD54L	95	59.407	Equus_caballus
WBGene00004298	rad-54	82	59.704	ENSEEUG00000008113	RAD54L	90	59.704	Erinaceus_europaeus
WBGene00004298	rad-54	83	59.057	ENSELUG00000002295	rad54l	91	59.057	Esox_lucius
WBGene00004298	rad-54	92	55.497	ENSFCAG00000003444	RAD54L	99	55.497	Felis_catus
WBGene00004298	rad-54	84	59.712	ENSFALG00000009480	RAD54L	93	59.712	Ficedula_albicollis
WBGene00004298	rad-54	84	57.532	ENSFDAG00000007806	RAD54L	93	57.532	Fukomys_damarensis
WBGene00004298	rad-54	53	54.734	ENSFHEG00000009824	rad54l	74	55.116	Fundulus_heteroclitus
WBGene00004298	rad-54	83	59.824	ENSGMOG00000014568	rad54l	92	59.824	Gadus_morhua
WBGene00004298	rad-54	84	58.129	ENSGALG00000010356	RAD54L	86	58.993	Gallus_gallus
WBGene00004298	rad-54	75	60.325	ENSGAFG00000011110	rad54l	91	60.325	Gambusia_affinis
WBGene00004298	rad-54	82	58.780	ENSGACG00000003111	rad54l	88	58.780	Gasterosteus_aculeatus
WBGene00004298	rad-54	84	59.052	ENSGAGG00000014089	RAD54L	89	59.052	Gopherus_agassizii
WBGene00004298	rad-54	82	58.088	ENSGGOG00000010602	RAD54L	90	58.088	Gorilla_gorilla
WBGene00004298	rad-54	87	57.983	ENSHBUG00000007793	rad54l	95	57.983	Haplochromis_burtoni
WBGene00004298	rad-54	92	55.000	ENSHGLG00000000753	RAD54L	99	55.000	Heterocephalus_glaber_female
WBGene00004298	rad-54	92	55.000	ENSHGLG00100016987	RAD54L	99	55.000	Heterocephalus_glaber_male
WBGene00004298	rad-54	84	57.925	ENSIPUG00000015999	rad54l	99	57.925	Ictalurus_punctatus
WBGene00004298	rad-54	84	57.986	ENSSTOG00000029125	RAD54L	93	57.986	Ictidomys_tridecemlineatus
WBGene00004298	rad-54	79	49.541	ENSJJAG00000000235	-	87	49.541	Jaculus_jaculus
WBGene00004298	rad-54	83	59.706	ENSKMAG00000009944	rad54l	91	59.706	Kryptolebias_marmoratus
WBGene00004298	rad-54	84	58.009	ENSLBEG00000014617	rad54l	97	59.077	Labrus_bergylta
WBGene00004298	rad-54	96	54.672	ENSLOCG00000004144	rad54l	99	56.135	Lepisosteus_oculatus
WBGene00004298	rad-54	84	57.389	ENSLAFG00000007583	RAD54L	93	57.676	Loxodonta_africana
WBGene00004298	rad-54	82	58.529	ENSMFAG00000031241	RAD54L	90	58.529	Macaca_fascicularis
WBGene00004298	rad-54	82	58.529	ENSMMUG00000011568	RAD54L	90	58.529	Macaca_mulatta
WBGene00004298	rad-54	82	58.382	ENSMNEG00000038562	RAD54L	90	58.382	Macaca_nemestrina
WBGene00004298	rad-54	82	58.529	ENSMLEG00000038145	RAD54L	90	58.529	Mandrillus_leucophaeus
WBGene00004298	rad-54	84	57.554	ENSMAMG00000022180	rad54l	98	58.754	Mastacembelus_armatus
WBGene00004298	rad-54	87	57.703	ENSMZEG00005018081	rad54l	99	56.546	Maylandia_zebra
WBGene00004298	rad-54	84	58.273	ENSMGAG00000010634	RAD54L	93	59.137	Meleagris_gallopavo
WBGene00004298	rad-54	84	57.532	ENSMAUG00000020076	Rad54l	93	57.532	Mesocricetus_auratus
WBGene00004298	rad-54	82	59.118	ENSMICG00000003266	RAD54L	90	59.118	Microcebus_murinus
WBGene00004298	rad-54	84	57.986	ENSMOCG00000001778	Rad54l	93	57.986	Microtus_ochrogaster
WBGene00004298	rad-54	82	57.396	ENSMALG00000021148	rad54l	90	57.396	Monopterus_albus
WBGene00004298	rad-54	79	60.184	MGP_CAROLIEiJ_G0026325	Rad54l	85	60.184	Mus_caroli
WBGene00004298	rad-54	84	58.250	ENSMUSG00000028702	Rad54l	93	58.250	Mus_musculus
WBGene00004298	rad-54	84	58.250	MGP_PahariEiJ_G0028657	Rad54l	93	58.250	Mus_pahari
WBGene00004298	rad-54	84	58.106	MGP_SPRETEiJ_G0027297	Rad54l	93	58.106	Mus_spretus
WBGene00004298	rad-54	84	58.883	ENSMPUG00000012883	RAD54L	93	58.883	Mustela_putorius_furo
WBGene00004298	rad-54	84	58.393	ENSMLUG00000003763	RAD54L	93	58.393	Myotis_lucifugus
WBGene00004298	rad-54	84	58.537	ENSNGAG00000024213	Rad54l	93	58.537	Nannospalax_galili
WBGene00004298	rad-54	82	58.382	ENSNLEG00000016548	RAD54L	90	58.382	Nomascus_leucogenys
WBGene00004298	rad-54	82	57.058	ENSMEUG00000006793	RAD54L	99	57.058	Notamacropus_eugenii
WBGene00004298	rad-54	83	61.131	ENSOPRG00000016016	RAD54L	89	61.131	Ochotona_princeps
WBGene00004298	rad-54	84	58.537	ENSODEG00000008519	RAD54L	93	58.537	Octodon_degus
WBGene00004298	rad-54	84	58.934	ENSONIG00000007659	rad54l	93	58.934	Oreochromis_niloticus
WBGene00004298	rad-54	84	58.967	ENSOCUG00000005229	RAD54L	93	58.967	Oryctolagus_cuniculus
WBGene00004298	rad-54	83	58.419	ENSORLG00000002958	rad54l	96	56.606	Oryzias_latipes
WBGene00004298	rad-54	88	57.163	ENSORLG00020006554	rad54l	99	58.763	Oryzias_latipes_hni
WBGene00004298	rad-54	83	58.419	ENSORLG00015002907	rad54l	96	57.024	Oryzias_latipes_hsok
WBGene00004298	rad-54	85	57.328	ENSOMEG00000007770	rad54l	94	57.328	Oryzias_melastigma
WBGene00004298	rad-54	84	58.453	ENSOARG00000002264	RAD54L	92	58.453	Ovis_aries
WBGene00004298	rad-54	82	58.235	ENSPPAG00000031222	RAD54L	90	58.235	Pan_paniscus
WBGene00004298	rad-54	84	58.393	ENSPPRG00000010317	RAD54L	93	58.393	Panthera_pardus
WBGene00004298	rad-54	84	58.393	ENSPTIG00000012200	RAD54L	93	58.393	Panthera_tigris_altaica
WBGene00004298	rad-54	82	58.065	ENSPTRG00000000689	RAD54L	90	58.235	Pan_troglodytes
WBGene00004298	rad-54	82	58.529	ENSPANG00000016295	RAD54L	90	58.529	Papio_anubis
WBGene00004298	rad-54	82	58.346	ENSPKIG00000016172	rad54l	91	58.346	Paramormyrops_kingsleyae
WBGene00004298	rad-54	84	58.561	ENSPSIG00000003258	RAD54L	94	59.424	Pelodiscus_sinensis
WBGene00004298	rad-54	82	59.615	ENSPMGG00000016335	rad54l	91	59.615	Periophthalmus_magnuspinnatus
WBGene00004298	rad-54	84	57.963	ENSPEMG00000011422	Rad54l	93	57.963	Peromyscus_maniculatus_bairdii
WBGene00004298	rad-54	83	54.307	ENSPMAG00000007719	rad54l	91	54.307	Petromyzon_marinus
WBGene00004298	rad-54	84	58.561	ENSPCIG00000029032	RAD54L	93	58.561	Phascolarctos_cinereus
WBGene00004298	rad-54	75	60.650	ENSPFOG00000013732	rad54l	96	60.650	Poecilia_formosa
WBGene00004298	rad-54	74	58.766	ENSPLAG00000023416	rad54l	99	58.766	Poecilia_latipinna
WBGene00004298	rad-54	75	60.650	ENSPMEG00000008299	rad54l	91	60.650	Poecilia_mexicana
WBGene00004298	rad-54	82	59.172	ENSPREG00000019955	rad54l	91	59.172	Poecilia_reticulata
WBGene00004298	rad-54	82	46.176	ENSPPYG00000001398	RAD54L	89	46.176	Pongo_abelii
WBGene00004298	rad-54	63	64.706	ENSPCAG00000005323	RAD54L	70	64.706	Procavia_capensis
WBGene00004298	rad-54	84	58.393	ENSPCOG00000015423	RAD54L	93	58.393	Propithecus_coquereli
WBGene00004298	rad-54	82	58.003	ENSPNYG00000002942	rad54l	94	58.944	Pundamilia_nyererei
WBGene00004298	rad-54	84	58.621	ENSPNAG00000012483	rad54l	93	58.621	Pygocentrus_nattereri
WBGene00004298	rad-54	84	58.106	ENSRNOG00000013148	Rad54l	93	58.106	Rattus_norvegicus
WBGene00004298	rad-54	82	58.529	ENSRBIG00000043495	RAD54L	90	58.529	Rhinopithecus_bieti
WBGene00004298	rad-54	82	58.529	ENSRROG00000020844	RAD54L	90	58.529	Rhinopithecus_roxellana
WBGene00004298	rad-54	75	46.575	YGL163C	RAD54	73	46.988	Saccharomyces_cerevisiae
WBGene00004298	rad-54	82	58.529	ENSSBOG00000024672	RAD54L	90	58.529	Saimiri_boliviensis_boliviensis
WBGene00004298	rad-54	84	58.417	ENSSHAG00000000110	RAD54L	93	58.417	Sarcophilus_harrisii
WBGene00004298	rad-54	84	58.442	ENSSDUG00000019147	rad54l	93	58.442	Seriola_dumerili
WBGene00004298	rad-54	84	58.297	ENSSLDG00000012330	rad54l	95	59.463	Seriola_lalandi_dorsalis
WBGene00004298	rad-54	67	60.682	ENSSARG00000006689	RAD54L	89	60.682	Sorex_araneus
WBGene00004298	rad-54	84	58.526	ENSSPAG00000011016	rad54l	93	58.526	Stegastes_partitus
WBGene00004298	rad-54	94	54.499	ENSSSCG00000003905	RAD54L	98	54.499	Sus_scrofa
WBGene00004298	rad-54	84	59.568	ENSTGUG00000008233	RAD54L	93	59.568	Taeniopygia_guttata
WBGene00004298	rad-54	82	57.738	ENSTRUG00000008410	rad54l	94	58.754	Takifugu_rubripes
WBGene00004298	rad-54	83	56.977	ENSTNIG00000004716	rad54l	99	55.168	Tetraodon_nigroviridis
WBGene00004298	rad-54	82	57.333	ENSTTRG00000006315	RAD54L	90	57.333	Tursiops_truncatus
WBGene00004298	rad-54	84	58.393	ENSUAMG00000011824	RAD54L	93	58.393	Ursus_americanus
WBGene00004298	rad-54	84	57.532	ENSUMAG00000023603	RAD54L	93	57.532	Ursus_maritimus
WBGene00004298	rad-54	84	58.393	ENSVVUG00000007201	RAD54L	93	58.393	Vulpes_vulpes
WBGene00004298	rad-54	84	54.429	ENSXETG00000004369	rad54l	97	55.286	Xenopus_tropicalis