EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00004315 (Gene tree)
Gene ID: -
Gene Symbol: rbd-1
Alias: -
Full Name: RBD (RNA binding domain) protein
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 5148 bases
Position: chrIV:12724948-12730095
Accession: A0A061AJ27
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
T23F6	RRM_1	PF00076.22	2.3e-79	1	5
T23F6	RRM_1	PF00076.22	2.3e-79	2	5
T23F6	RRM_1	PF00076.22	2.3e-79	3	5
T23F6	RRM_1	PF00076.22	2.3e-79	4	5
T23F6	RRM_1	PF00076.22	2.3e-79	5	5
T23F6	RRM_1	PF00076.22	2.3e-79	1	5
T23F6	RRM_1	PF00076.22	2.3e-79	2	5
T23F6	RRM_1	PF00076.22	2.3e-79	3	5
T23F6	RRM_1	PF00076.22	2.3e-79	4	5
T23F6	RRM_1	PF00076.22	2.3e-79	5	5
T23F6	RRM_1	PF00076.22	5.5e-37	1	3
T23F6	RRM_1	PF00076.22	5.5e-37	2	3
T23F6	RRM_1	PF00076.22	5.5e-37	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
T23F6.4a.1	-	2783	NM_070031	T23F6.4a.1	872 (aa)	NP_502432	Q9XU67
T23F6.4a.2	-	2745	NM_070031	T23F6.4a.2	872 (aa)	NP_502432	Q9XU67
T23F6.4b	-	1291	NM_001306991	T23F6.4b	388 (aa)	NP_001293920	A0A061AJ27

Gene Model

Click here to download WBGene00004315's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00004315's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00004315	rbd-1	100	43.687	ENSG00000122965	RBM19	92	50.485	Homo_sapiens
WBGene00004315	rbd-1	64	48.421	ENSAPOG00000010507	rbm19	86	47.273	Acanthochromis_polyacanthus
WBGene00004315	rbd-1	100	42.564	ENSAMEG00000008544	RBM19	83	43.478	Ailuropoda_melanoleuca
WBGene00004315	rbd-1	81	53.110	ENSACIG00000017780	rbm19	81	45.946	Amphilophus_citrinellus
WBGene00004315	rbd-1	64	48.421	ENSAOCG00000008554	rbm19	84	48.421	Amphiprion_ocellaris
WBGene00004315	rbd-1	64	48.421	ENSAPEG00000022381	rbm19	78	48.421	Amphiprion_percula
WBGene00004315	rbd-1	93	50.244	ENSATEG00000007000	rbm19	82	46.341	Anabas_testudineus
WBGene00004315	rbd-1	83	44.048	ENSAPLG00000015319	RBM19	85	45.000	Anas_platyrhynchos
WBGene00004315	rbd-1	98	42.894	ENSACAG00000005065	RBM19	85	40.819	Anolis_carolinensis
WBGene00004315	rbd-1	100	43.108	ENSANAG00000024136	RBM19	87	44.928	Aotus_nancymaae
WBGene00004315	rbd-1	86	42.446	ENSACLG00000001399	rbm19	82	42.446	Astatotilapia_calliptera
WBGene00004315	rbd-1	81	46.121	ENSAMXG00000017073	rbm19	83	40.741	Astyanax_mexicanus
WBGene00004315	rbd-1	99	44.928	ENSBTAG00000031824	RBM19	85	44.928	Bos_taurus
WBGene00004315	rbd-1	100	43.959	ENSCJAG00000009798	RBM19	83	43.478	Callithrix_jacchus
WBGene00004315	rbd-1	100	44.110	ENSCAFG00000009146	RBM19	82	43.571	Canis_familiaris
WBGene00004315	rbd-1	100	44.110	ENSCAFG00020017862	RBM19	82	43.571	Canis_lupus_dingo
WBGene00004315	rbd-1	99	43.434	ENSCHIG00000014917	RBM19	85	44.928	Capra_hircus
WBGene00004315	rbd-1	81	49.000	ENSTSYG00000007207	RBM19	79	42.647	Carlito_syrichta
WBGene00004315	rbd-1	98	42.857	ENSCAPG00000006869	RBM19	83	39.716	Cavia_aperea
WBGene00004315	rbd-1	100	42.821	ENSCPOG00000026629	RBM19	85	40.251	Cavia_porcellus
WBGene00004315	rbd-1	83	37.798	ENSCCAG00000026637	-	79	38.165	Cebus_capucinus
WBGene00004315	rbd-1	99	44.473	ENSCCAG00000021665	-	87	44.203	Cebus_capucinus
WBGene00004315	rbd-1	99	46.341	ENSCATG00000035841	RBM19	83	41.160	Cercocebus_atys
WBGene00004315	rbd-1	98	44.845	ENSCLAG00000009965	RBM19	82	42.963	Chinchilla_lanigera
WBGene00004315	rbd-1	100	42.619	ENSCSAG00000002352	RBM19	84	42.754	Chlorocebus_sabaeus
WBGene00004315	rbd-1	99	50.515	ENSCPBG00000011990	RBM19	80	45.736	Chrysemys_picta_bellii
WBGene00004315	rbd-1	99	40.166	ENSCING00000023076	-	99	35.948	Ciona_intestinalis
WBGene00004315	rbd-1	99	49.000	ENSCANG00000035927	RBM19	87	43.478	Colobus_angolensis_palliatus
WBGene00004315	rbd-1	93	44.751	ENSCGRG00001000323	Rbm19	83	42.647	Cricetulus_griseus_chok1gshd
WBGene00004315	rbd-1	93	44.751	ENSCGRG00000010371	Rbm19	83	42.647	Cricetulus_griseus_crigri
WBGene00004315	rbd-1	86	52.036	ENSCSEG00000017436	rbm19	86	39.685	Cynoglossus_semilaevis
WBGene00004315	rbd-1	93	42.149	ENSCVAG00000000300	rbm19	78	49.462	Cyprinodon_variegatus
WBGene00004315	rbd-1	99	48.515	ENSDARG00000042590	rbm19	81	47.059	Danio_rerio
WBGene00004315	rbd-1	99	48.958	ENSDNOG00000024534	RBM19	81	48.958	Dasypus_novemcinctus
WBGene00004315	rbd-1	88	49.462	ENSDORG00000008549	Rbm19	79	49.462	Dipodomys_ordii
WBGene00004315	rbd-1	100	37.310	FBgn0036018	CG3335	88	40.136	Drosophila_melanogaster
WBGene00004315	rbd-1	77	41.584	ENSETEG00000016887	-	53	49.275	Echinops_telfairi
WBGene00004315	rbd-1	67	45.679	ENSEBUG00000008521	-	67	45.679	Eptatretus_burgeri
WBGene00004315	rbd-1	100	44.776	ENSEASG00005009452	RBM19	83	42.754	Equus_asinus_asinus
WBGene00004315	rbd-1	100	45.363	ENSECAG00000023716	RBM19	83	42.754	Equus_caballus
WBGene00004315	rbd-1	83	46.875	ENSELUG00000012561	rbm19	81	46.875	Esox_lucius
WBGene00004315	rbd-1	100	43.500	ENSFCAG00000002962	RBM19	87	40.251	Felis_catus
WBGene00004315	rbd-1	95	43.243	ENSFALG00000007768	RBM19	91	40.000	Ficedula_albicollis
WBGene00004315	rbd-1	96	43.704	ENSFDAG00000004629	RBM19	80	43.704	Fukomys_damarensis
WBGene00004315	rbd-1	87	50.481	ENSFHEG00000012578	rbm19	82	46.729	Fundulus_heteroclitus
WBGene00004315	rbd-1	80	49.756	ENSGMOG00000013120	rbm19	80	43.750	Gadus_morhua
WBGene00004315	rbd-1	98	45.000	ENSGALG00000008289	RBM19	86	45.000	Gallus_gallus
WBGene00004315	rbd-1	56	50.526	ENSGAFG00000012337	rbm19	78	50.526	Gambusia_affinis
WBGene00004315	rbd-1	96	43.158	ENSGACG00000009462	rbm19	84	43.158	Gasterosteus_aculeatus
WBGene00004315	rbd-1	99	44.178	ENSGAGG00000019457	RBM19	95	41.516	Gopherus_agassizii
WBGene00004315	rbd-1	100	43.478	ENSGGOG00000007371	RBM19	83	42.754	Gorilla_gorilla
WBGene00004315	rbd-1	90	49.474	ENSHBUG00000009047	rbm19	79	49.474	Haplochromis_burtoni
WBGene00004315	rbd-1	96	44.526	ENSHGLG00000010899	RBM19	81	44.526	Heterocephalus_glaber_female
WBGene00004315	rbd-1	93	44.722	ENSHGLG00100017936	RBM19	81	44.526	Heterocephalus_glaber_male
WBGene00004315	rbd-1	89	47.368	ENSHCOG00000016446	rbm19	77	47.368	Hippocampus_comes
WBGene00004315	rbd-1	99	43.066	ENSIPUG00000023849	rbm19	84	43.066	Ictalurus_punctatus
WBGene00004315	rbd-1	88	52.683	ENSKMAG00000014807	rbm19	83	42.982	Kryptolebias_marmoratus
WBGene00004315	rbd-1	89	47.525	ENSLBEG00000012897	rbm19	80	47.525	Labrus_bergylta
WBGene00004315	rbd-1	76	37.966	ENSLACG00000012030	RBM19	88	37.500	Latimeria_chalumnae
WBGene00004315	rbd-1	99	40.155	ENSLOCG00000008341	rbm19	83	41.045	Lepisosteus_oculatus
WBGene00004315	rbd-1	79	48.958	ENSLAFG00000004187	RBM19	77	48.485	Loxodonta_africana
WBGene00004315	rbd-1	100	43.797	ENSMFAG00000046091	RBM19	82	41.667	Macaca_fascicularis
WBGene00004315	rbd-1	99	47.561	ENSMMUG00000010496	RBM19	83	43.478	Macaca_mulatta
WBGene00004315	rbd-1	90	49.000	ENSMNEG00000028452	RBM19	82	41.912	Macaca_nemestrina
WBGene00004315	rbd-1	100	43.401	ENSMLEG00000034550	RBM19	81	42.754	Mandrillus_leucophaeus
WBGene00004315	rbd-1	96	47.368	ENSMAMG00000014397	rbm19	82	40.299	Mastacembelus_armatus
WBGene00004315	rbd-1	98	49.474	ENSMZEG00005016607	rbm19	82	42.446	Maylandia_zebra
WBGene00004315	rbd-1	69	50.233	ENSMGAG00000010087	RBM19	72	49.778	Meleagris_gallopavo
WBGene00004315	rbd-1	93	45.055	ENSMAUG00000019290	Rbm19	83	43.066	Mesocricetus_auratus
WBGene00004315	rbd-1	100	43.401	ENSMICG00000014423	RBM19	83	42.647	Microcebus_murinus
WBGene00004315	rbd-1	63	45.455	ENSMMOG00000017839	rbm19	85	45.455	Mola_mola
WBGene00004315	rbd-1	98	43.152	ENSMODG00000003597	RBM19	85	42.553	Monodelphis_domestica
WBGene00004315	rbd-1	84	52.195	ENSMALG00000012647	rbm19	81	39.552	Monopterus_albus
WBGene00004315	rbd-1	99	44.330	MGP_CAROLIEiJ_G0027656	Rbm19	83	42.963	Mus_caroli
WBGene00004315	rbd-1	99	43.041	ENSMUSG00000029594	Rbm19	83	43.704	Mus_musculus
WBGene00004315	rbd-1	99	43.557	MGP_PahariEiJ_G0024238	Rbm19	83	42.553	Mus_pahari
WBGene00004315	rbd-1	99	43.299	MGP_SPRETEiJ_G0028656	Rbm19	83	42.963	Mus_spretus
WBGene00004315	rbd-1	100	43.284	ENSMPUG00000002694	RBM19	82	42.754	Mustela_putorius_furo
WBGene00004315	rbd-1	99	46.364	ENSMLUG00000015075	RBM19	80	46.364	Myotis_lucifugus
WBGene00004315	rbd-1	99	43.990	ENSNGAG00000009076	Rbm19	83	43.478	Nannospalax_galili
WBGene00004315	rbd-1	57	49.474	ENSNBRG00000005913	rbm19	79	49.474	Neolamprologus_brichardi
WBGene00004315	rbd-1	100	42.967	ENSNLEG00000000190	RBM19	87	43.478	Nomascus_leucogenys
WBGene00004315	rbd-1	85	42.553	ENSMEUG00000004045	RBM19	75	43.262	Notamacropus_eugenii
WBGene00004315	rbd-1	88	50.549	ENSOPRG00000012064	RBM19	78	42.636	Ochotona_princeps
WBGene00004315	rbd-1	81	50.000	ENSODEG00000012977	RBM19	82	48.500	Octodon_degus
WBGene00004315	rbd-1	63	52.074	ENSONIG00000013576	rbm19	87	39.565	Oreochromis_niloticus
WBGene00004315	rbd-1	93	43.704	ENSOCUG00000009398	RBM19	79	43.704	Oryctolagus_cuniculus
WBGene00004315	rbd-1	91	47.368	ENSORLG00000008077	rbm19	78	47.368	Oryzias_latipes
WBGene00004315	rbd-1	92	46.316	ENSORLG00020013187	rbm19	80	47.312	Oryzias_latipes_hni
WBGene00004315	rbd-1	98	43.643	ENSORLG00015001774	rbm19	78	47.368	Oryzias_latipes_hsok
WBGene00004315	rbd-1	98	48.421	ENSOMEG00000003334	rbm19	78	48.421	Oryzias_melastigma
WBGene00004315	rbd-1	79	51.042	ENSOGAG00000000602	RBM19	82	42.647	Otolemur_garnettii
WBGene00004315	rbd-1	99	43.544	ENSOARG00000006827	RBM19	85	43.478	Ovis_aries
WBGene00004315	rbd-1	99	48.000	ENSPPAG00000043712	RBM19	87	42.754	Pan_paniscus
WBGene00004315	rbd-1	100	42.250	ENSPPRG00000023027	RBM19	83	42.754	Panthera_pardus
WBGene00004315	rbd-1	96	43.478	ENSPTIG00000011096	RBM19	86	43.478	Panthera_tigris_altaica
WBGene00004315	rbd-1	99	48.000	ENSPTRG00000005494	RBM19	87	42.754	Pan_troglodytes
WBGene00004315	rbd-1	100	43.797	ENSPANG00000004795	RBM19	82	42.056	Papio_anubis
WBGene00004315	rbd-1	90	49.485	ENSPKIG00000017095	rbm19	83	42.537	Paramormyrops_kingsleyae
WBGene00004315	rbd-1	94	40.791	ENSPSIG00000008191	RBM19	80	38.451	Pelodiscus_sinensis
WBGene00004315	rbd-1	88	53.431	ENSPMGG00000019087	rbm19	98	53.431	Periophthalmus_magnuspinnatus
WBGene00004315	rbd-1	93	44.598	ENSPEMG00000018058	Rbm19	83	41.791	Peromyscus_maniculatus_bairdii
WBGene00004315	rbd-1	99	41.582	ENSPCIG00000028861	RBM19	83	42.553	Phascolarctos_cinereus
WBGene00004315	rbd-1	56	50.526	ENSPFOG00000015300	rbm19	77	50.526	Poecilia_formosa
WBGene00004315	rbd-1	80	50.962	ENSPLAG00000000059	rbm19	78	50.526	Poecilia_latipinna
WBGene00004315	rbd-1	80	50.526	ENSPMEG00000018585	rbm19	97	36.343	Poecilia_mexicana
WBGene00004315	rbd-1	80	50.962	ENSPREG00000000978	rbm19	77	50.526	Poecilia_reticulata
WBGene00004315	rbd-1	100	43.478	ENSPPYG00000004993	RBM19	81	44.203	Pongo_abelii
WBGene00004315	rbd-1	100	43.401	ENSPCOG00000016190	RBM19	85	41.912	Propithecus_coquereli
WBGene00004315	rbd-1	98	42.487	ENSPVAG00000011618	RBM19	82	41.549	Pteropus_vampyrus
WBGene00004315	rbd-1	82	50.885	ENSPNYG00000017434	rbm19	78	49.474	Pundamilia_nyererei
WBGene00004315	rbd-1	99	47.368	ENSPNAG00000012069	rbm19	85	47.368	Pygocentrus_nattereri
WBGene00004315	rbd-1	99	44.072	ENSRNOG00000001397	Rbm19	83	43.066	Rattus_norvegicus
WBGene00004315	rbd-1	100	43.797	ENSRBIG00000041419	RBM19	87	43.478	Rhinopithecus_bieti
WBGene00004315	rbd-1	100	43.797	ENSRROG00000031938	RBM19	87	43.478	Rhinopithecus_roxellana
WBGene00004315	rbd-1	88	35.965	YPR112C	-	97	31.573	Saccharomyces_cerevisiae
WBGene00004315	rbd-1	99	42.029	ENSSBOG00000021434	-	87	44.203	Saimiri_boliviensis_boliviensis
WBGene00004315	rbd-1	87	41.912	ENSSBOG00000022679	-	85	41.912	Saimiri_boliviensis_boliviensis
WBGene00004315	rbd-1	99	42.119	ENSSHAG00000012256	RBM19	84	43.662	Sarcophilus_harrisii
WBGene00004315	rbd-1	88	48.958	ENSSFOG00015005124	rbm19	79	44.800	Scleropages_formosus
WBGene00004315	rbd-1	64	46.316	ENSSMAG00000011828	rbm19	83	46.316	Scophthalmus_maximus
WBGene00004315	rbd-1	65	48.421	ENSSDUG00000013544	rbm19	82	44.262	Seriola_dumerili
WBGene00004315	rbd-1	57	48.421	ENSSLDG00000025413	rbm19	83	48.421	Seriola_lalandi_dorsalis
WBGene00004315	rbd-1	97	40.978	ENSSPUG00000011064	RBM19	99	38.932	Sphenodon_punctatus
WBGene00004315	rbd-1	88	47.368	ENSSPAG00000018685	rbm19	80	47.368	Stegastes_partitus
WBGene00004315	rbd-1	100	43.325	ENSSSCG00000009868	RBM19	86	42.754	Sus_scrofa
WBGene00004315	rbd-1	100	42.494	ENSTGUG00000009017	RBM19	84	42.143	Taeniopygia_guttata
WBGene00004315	rbd-1	93	43.889	ENSTRUG00000016032	rbm19	81	40.876	Takifugu_rubripes
WBGene00004315	rbd-1	85	43.939	ENSTTRG00000003987	RBM19	70	42.754	Tursiops_truncatus
WBGene00004315	rbd-1	100	44.416	ENSUAMG00000002076	RBM19	82	41.600	Ursus_americanus
WBGene00004315	rbd-1	99	43.990	ENSUMAG00000010816	RBM19	84	43.478	Ursus_maritimus
WBGene00004315	rbd-1	100	44.361	ENSVVUG00000007886	RBM19	82	44.286	Vulpes_vulpes
WBGene00004315	rbd-1	99	49.495	ENSXETG00000017668	rbm19	84	40.580	Xenopus_tropicalis
WBGene00004315	rbd-1	80	50.962	ENSXCOG00000016995	rbm19	77	50.526	Xiphophorus_couchianus
WBGene00004315	rbd-1	64	50.526	ENSXMAG00000007641	rbm19	77	50.526	Xiphophorus_maculatus