EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00004355 (Gene tree)
Gene ID: -
Gene Symbol: rha-1
Alias: -
Full Name: Probable ATP-dependent RNA helicase A
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Minus strand
Length: 5164 bases
Position: chrII:8878496-8883659
Accession: Q22307
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
T07D4	dsrm	PF00035.26	3.8e-20	1	2
T07D4	dsrm	PF00035.26	3.8e-20	2	2
T07D4	DEAD	PF00270.29	9.3e-08	1	1
T07D4	HA2	PF04408.23	6.8e-13	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
T07D4.3	-	4029	NM_063489	T07D4.3	1301 (aa)	NP_495890	Q22307

Gene Model

Click here to download WBGene00004355's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00004355's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00004355	rha-1	58	42.678	WBGene00009922	F52B5.3	58	42.678

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00004355	rha-1	91	42.739	ENSG00000135829	DHX9	98	41.602	Homo_sapiens
WBGene00004355	rha-1	91	42.209	ENSAMEG00000002233	DHX9	97	41.641	Ailuropoda_melanoleuca
WBGene00004355	rha-1	91	41.612	ENSACIG00000016431	dhx9	99	40.075	Amphilophus_citrinellus
WBGene00004355	rha-1	81	44.236	ENSAOCG00000010719	dhx9	98	44.434	Amphiprion_ocellaris
WBGene00004355	rha-1	91	42.941	ENSAPEG00000006339	dhx9	97	41.679	Amphiprion_percula
WBGene00004355	rha-1	87	53.659	ENSATEG00000007101	dhx9	99	42.628	Anabas_testudineus
WBGene00004355	rha-1	89	43.548	ENSACAG00000005023	DHX9	99	41.762	Anolis_carolinensis
WBGene00004355	rha-1	91	42.514	ENSANAG00000030279	DHX9	95	41.966	Aotus_nancymaae
WBGene00004355	rha-1	91	42.273	ENSACLG00000022296	dhx9	98	43.086	Astatotilapia_calliptera
WBGene00004355	rha-1	91	43.259	ENSBTAG00000019821	DHX9	93	42.097	Bos_taurus
WBGene00004355	rha-1	91	42.692	ENSCJAG00000004821	DHX9	99	43.303	Callithrix_jacchus
WBGene00004355	rha-1	91	42.202	ENSCHIG00000018643	DHX9	99	40.732	Capra_hircus
WBGene00004355	rha-1	91	42.184	ENSTSYG00000007970	DHX9	99	43.345	Carlito_syrichta
WBGene00004355	rha-1	62	44.361	ENSCAPG00000015604	DHX9	87	44.074	Cavia_aperea
WBGene00004355	rha-1	65	43.714	ENSCCAG00000022597	DHX9	99	43.829	Cebus_capucinus
WBGene00004355	rha-1	91	42.964	ENSCATG00000027871	DHX9	99	44.152	Cercocebus_atys
WBGene00004355	rha-1	91	43.140	ENSCLAG00000010684	DHX9	90	41.822	Chinchilla_lanigera
WBGene00004355	rha-1	80	44.498	ENSCSAG00000012549	DHX9	97	42.882	Chlorocebus_sabaeus
WBGene00004355	rha-1	89	37.660	ENSCHOG00000012736	DHX9	99	38.205	Choloepus_hoffmanni
WBGene00004355	rha-1	91	43.221	ENSCPBG00000015757	DHX9	97	41.958	Chrysemys_picta_bellii
WBGene00004355	rha-1	89	43.273	ENSCSAVG00000001493	-	99	43.270	Ciona_savignyi
WBGene00004355	rha-1	91	42.964	ENSCANG00000032888	DHX9	99	41.626	Colobus_angolensis_palliatus
WBGene00004355	rha-1	91	42.444	ENSCGRG00001015796	Dhx9	99	41.810	Cricetulus_griseus_chok1gshd
WBGene00004355	rha-1	91	42.444	ENSCGRG00000011336	Dhx9	87	42.916	Cricetulus_griseus_crigri
WBGene00004355	rha-1	89	43.176	ENSCSEG00000017621	dhx9	99	43.373	Cynoglossus_semilaevis
WBGene00004355	rha-1	88	42.354	ENSCVAG00000009479	dhx9	97	41.399	Cyprinodon_variegatus
WBGene00004355	rha-1	91	42.763	ENSDARG00000079725	dhx9	99	41.454	Danio_rerio
WBGene00004355	rha-1	91	42.362	ENSDNOG00000004038	DHX9	98	41.946	Dasypus_novemcinctus
WBGene00004355	rha-1	91	42.928	ENSDORG00000012610	Dhx9	87	41.797	Dipodomys_ordii
WBGene00004355	rha-1	88	40.921	FBgn0002774	mle	96	39.328	Drosophila_melanogaster
WBGene00004355	rha-1	76	50.000	ENSETEG00000009729	DHX9	79	50.000	Echinops_telfairi
WBGene00004355	rha-1	83	42.624	ENSEBUG00000015945	-	93	43.609	Eptatretus_burgeri
WBGene00004355	rha-1	91	42.031	ENSEASG00005006589	DHX9	95	41.699	Equus_asinus_asinus
WBGene00004355	rha-1	91	42.031	ENSECAG00000011933	DHX9	99	41.350	Equus_caballus
WBGene00004355	rha-1	69	50.000	ENSEEUG00000004824	DHX9	69	50.000	Erinaceus_europaeus
WBGene00004355	rha-1	91	42.694	ENSELUG00000010512	dhx9	97	41.590	Esox_lucius
WBGene00004355	rha-1	91	42.680	ENSFCAG00000019306	DHX9	94	41.360	Felis_catus
WBGene00004355	rha-1	86	42.794	ENSFALG00000002992	DHX9	99	40.985	Ficedula_albicollis
WBGene00004355	rha-1	91	43.212	ENSFDAG00000011454	DHX9	99	41.897	Fukomys_damarensis
WBGene00004355	rha-1	91	43.573	ENSGAGG00000024443	DHX9	97	42.587	Gopherus_agassizii
WBGene00004355	rha-1	91	42.739	ENSGGOG00000013533	DHX9	98	41.602	Gorilla_gorilla
WBGene00004355	rha-1	91	42.075	ENSHBUG00000004129	dhx9	99	41.231	Haplochromis_burtoni
WBGene00004355	rha-1	87	52.439	ENSHCOG00000012968	dhx9	98	41.744	Hippocampus_comes
WBGene00004355	rha-1	91	42.715	ENSIPUG00000016675	dhx9	94	41.342	Ictalurus_punctatus
WBGene00004355	rha-1	91	43.152	ENSSTOG00000016288	DHX9	93	41.925	Ictidomys_tridecemlineatus
WBGene00004355	rha-1	91	42.775	ENSJJAG00000003249	Dhx9	90	41.602	Jaculus_jaculus
WBGene00004355	rha-1	64	40.117	ENSLACG00000017767	DHX9	65	39.766	Latimeria_chalumnae
WBGene00004355	rha-1	91	42.892	ENSLOCG00000002158	dhx9	97	41.507	Lepisosteus_oculatus
WBGene00004355	rha-1	91	43.174	ENSLAFG00000022058	DHX9	99	42.191	Loxodonta_africana
WBGene00004355	rha-1	91	43.046	ENSMFAG00000041152	DHX9	99	44.250	Macaca_fascicularis
WBGene00004355	rha-1	91	43.046	ENSMMUG00000005635	DHX9	99	41.667	Macaca_mulatta
WBGene00004355	rha-1	91	43.046	ENSMNEG00000041195	DHX9	99	41.667	Macaca_nemestrina
WBGene00004355	rha-1	91	42.964	ENSMLEG00000039925	DHX9	99	43.028	Mandrillus_leucophaeus
WBGene00004355	rha-1	89	42.602	ENSMAMG00000018644	dhx9	96	43.063	Mastacembelus_armatus
WBGene00004355	rha-1	91	42.273	ENSMZEG00005014167	dhx9	99	41.462	Maylandia_zebra
WBGene00004355	rha-1	91	42.834	ENSMAUG00000020414	Dhx9	88	41.796	Mesocricetus_auratus
WBGene00004355	rha-1	91	42.193	ENSMICG00000008285	DHX9	99	43.470	Microcebus_murinus
WBGene00004355	rha-1	91	42.349	ENSMOCG00000019404	Dhx9	88	41.905	Microtus_ochrogaster
WBGene00004355	rha-1	87	42.360	ENSMMOG00000001268	dhx9	97	42.190	Mola_mola
WBGene00004355	rha-1	91	43.069	ENSMODG00000006955	DHX9	98	42.155	Monodelphis_domestica
WBGene00004355	rha-1	89	43.026	ENSMALG00000000318	dhx9	99	43.013	Monopterus_albus
WBGene00004355	rha-1	91	42.658	MGP_CAROLIEiJ_G0014709	Dhx9	99	41.425	Mus_caroli
WBGene00004355	rha-1	91	42.658	ENSMUSG00000042699	Dhx9	99	41.425	Mus_musculus
WBGene00004355	rha-1	91	42.658	MGP_SPRETEiJ_G0015516	Dhx9	99	41.425	Mus_spretus
WBGene00004355	rha-1	91	42.504	ENSMPUG00000011544	DHX9	99	41.792	Mustela_putorius_furo
WBGene00004355	rha-1	89	42.723	ENSMLUG00000011163	DHX9	98	41.040	Myotis_lucifugus
WBGene00004355	rha-1	91	42.739	ENSNLEG00000018013	DHX9	97	41.443	Nomascus_leucogenys
WBGene00004355	rha-1	82	57.143	ENSOPRG00000016111	DHX9	91	57.143	Ochotona_princeps
WBGene00004355	rha-1	91	41.951	ENSONIG00000000293	dhx9	97	41.181	Oreochromis_niloticus
WBGene00004355	rha-1	91	42.005	ENSOCUG00000014651	DHX9	99	41.041	Oryctolagus_cuniculus
WBGene00004355	rha-1	91	41.975	ENSORLG00000007454	dhx9	97	40.789	Oryzias_latipes
WBGene00004355	rha-1	91	41.941	ENSORLG00020015369	dhx9	99	40.810	Oryzias_latipes_hni
WBGene00004355	rha-1	91	41.544	ENSORLG00015000892	dhx9	98	40.801	Oryzias_latipes_hsok
WBGene00004355	rha-1	91	41.941	ENSOMEG00000002437	dhx9	99	41.578	Oryzias_melastigma
WBGene00004355	rha-1	91	42.432	ENSOGAG00000002620	DHX9	99	41.527	Otolemur_garnettii
WBGene00004355	rha-1	91	42.477	ENSOARG00000019089	DHX9	93	42.006	Ovis_aries
WBGene00004355	rha-1	91	42.739	ENSPPAG00000030190	DHX9	99	43.883	Pan_paniscus
WBGene00004355	rha-1	91	42.680	ENSPPRG00000005890	DHX9	99	41.221	Panthera_pardus
WBGene00004355	rha-1	91	42.680	ENSPTIG00000021059	DHX9	99	41.221	Panthera_tigris_altaica
WBGene00004355	rha-1	91	42.739	ENSPTRG00000001759	DHX9	98	41.602	Pan_troglodytes
WBGene00004355	rha-1	91	42.964	ENSPANG00000012826	DHX9	99	41.590	Papio_anubis
WBGene00004355	rha-1	92	42.298	ENSPKIG00000006698	dhx9	98	41.318	Paramormyrops_kingsleyae
WBGene00004355	rha-1	91	43.796	ENSPSIG00000006241	DHX9	98	42.747	Pelodiscus_sinensis
WBGene00004355	rha-1	89	43.430	ENSPMGG00000009280	dhx9	96	41.850	Periophthalmus_magnuspinnatus
WBGene00004355	rha-1	91	42.444	ENSPEMG00000001238	Dhx9	88	41.751	Peromyscus_maniculatus_bairdii
WBGene00004355	rha-1	91	42.975	ENSPCIG00000003716	DHX9	98	43.210	Phascolarctos_cinereus
WBGene00004355	rha-1	89	42.445	ENSPFOG00000019152	-	99	42.539	Poecilia_formosa
WBGene00004355	rha-1	91	41.866	ENSPLAG00000001496	dhx9	99	41.140	Poecilia_latipinna
WBGene00004355	rha-1	89	42.347	ENSPMEG00000019991	dhx9	97	42.761	Poecilia_mexicana
WBGene00004355	rha-1	91	41.585	ENSPREG00000019307	dhx9	99	41.866	Poecilia_reticulata
WBGene00004355	rha-1	91	42.739	ENSPPYG00000000431	DHX9	99	41.208	Pongo_abelii
WBGene00004355	rha-1	82	44.199	ENSPCAG00000011042	DHX9	92	38.144	Procavia_capensis
WBGene00004355	rha-1	91	42.123	ENSPCOG00000018029	DHX9	99	41.267	Propithecus_coquereli
WBGene00004355	rha-1	91	41.874	ENSPVAG00000000836	DHX9	99	40.437	Pteropus_vampyrus
WBGene00004355	rha-1	91	42.691	ENSPNYG00000008480	dhx9	99	41.751	Pundamilia_nyererei
WBGene00004355	rha-1	91	42.206	ENSPNAG00000021343	dhx9	99	40.658	Pygocentrus_nattereri
WBGene00004355	rha-1	91	42.362	ENSRNOG00000002735	Dhx9	99	42.763	Rattus_norvegicus
WBGene00004355	rha-1	91	42.964	ENSRBIG00000041202	DHX9	99	41.445	Rhinopithecus_bieti
WBGene00004355	rha-1	91	42.964	ENSRROG00000044740	DHX9	97	43.686	Rhinopithecus_roxellana
WBGene00004355	rha-1	91	41.138	ENSSBOG00000026174	DHX9	99	39.924	Saimiri_boliviensis_boliviensis
WBGene00004355	rha-1	91	42.752	ENSSHAG00000008540	DHX9	97	43.187	Sarcophilus_harrisii
WBGene00004355	rha-1	94	41.158	ENSSFOG00015017378	dhx9	99	41.304	Scleropages_formosus
WBGene00004355	rha-1	84	51.685	ENSSDUG00000017407	dhx9	99	42.308	Seriola_dumerili
WBGene00004355	rha-1	89	43.162	ENSSLDG00000003926	dhx9	97	43.225	Seriola_lalandi_dorsalis
WBGene00004355	rha-1	81	43.908	ENSSARG00000003931	DHX9	91	44.023	Sorex_araneus
WBGene00004355	rha-1	91	43.163	ENSSPUG00000003934	DHX9	97	42.424	Sphenodon_punctatus
WBGene00004355	rha-1	91	42.869	ENSSSCG00000026806	DHX9	88	41.530	Sus_scrofa
WBGene00004355	rha-1	67	43.454	ENSTGUG00000004038	-	99	43.454	Taeniopygia_guttata
WBGene00004355	rha-1	65	47.826	ENSTBEG00000014052	DHX9	61	47.000	Tupaia_belangeri
WBGene00004355	rha-1	89	41.894	ENSTTRG00000007665	DHX9	99	42.393	Tursiops_truncatus
WBGene00004355	rha-1	91	42.391	ENSUAMG00000012201	DHX9	99	43.486	Ursus_americanus
WBGene00004355	rha-1	84	42.105	ENSVPAG00000008097	DHX9	85	42.054	Vicugna_pacos
WBGene00004355	rha-1	91	42.597	ENSVVUG00000008915	DHX9	96	41.908	Vulpes_vulpes
WBGene00004355	rha-1	92	43.115	ENSXETG00000012515	dhx9	99	41.873	Xenopus_tropicalis
WBGene00004355	rha-1	91	42.763	ENSXMAG00000011305	dhx9	98	41.635	Xiphophorus_maculatus