EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00004382 (Gene tree)
Gene ID: -
Gene Symbol: rnh-1.0
Alias: -
Full Name: RNase H
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 2485 bases
Position: chrII:4995551-4998035
Accession: Q1NZ33
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
F59A6	RNase_H	PF00075.24	1.2e-37	1	1
F59A6	RNase_H	PF00075.24	1.2e-37	1	1
F59A6	RNase_H	PF00075.24	1.2e-37	1	1
F59A6	RNase_H	PF00075.24	1.2e-37	1	1
F59A6	RNase_H	PF00075.24	2.1e-37	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
F59A6.6c	-	847	NM_001047321	F59A6.6c	251 (aa)	NP_001040786	Q86MG7
F59A6.6b	-	636	NM_182182	F59A6.6b	154 (aa)	NP_871982	Q86MP4
F59A6.6a	-	620	NM_062519	F59A6.6a	155 (aa)	NP_494920	Q21024
F59A6.6d.3	-	762	NM_001047322	F59A6.6d.3	198 (aa)	NP_001040787	Q1NZ33
F59A6.6d.2	-	866	-	F59A6.6d.2	198 (aa)	-	Q1NZ33
F59A6.6d.1	-	957	-	F59A6.6d.1	198 (aa)	-	Q1NZ33
F59A6.6d.4	-	670	NM_001047322	F59A6.6d.4	198 (aa)	NP_001040787	Q1NZ33

Gene Model

Click here to download WBGene00004382's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00004382's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00004382	rnh-1.0	63	40.000	WBGene00007303	rnh-1.3	94	40.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00004382	rnh-1.0	95	40.684	ENSG00000171865	RNASEH1	89	40.684	Homo_sapiens
WBGene00004382	rnh-1.0	97	38.376	ENSAPOG00000000412	rnaseh1	89	38.007	Acanthochromis_polyacanthus
WBGene00004382	rnh-1.0	95	41.016	ENSAMEG00000018433	RNASEH1	89	41.016	Ailuropoda_melanoleuca
WBGene00004382	rnh-1.0	97	35.955	ENSACIG00000014666	rnaseh1	88	36.364	Amphilophus_citrinellus
WBGene00004382	rnh-1.0	97	38.007	ENSAOCG00000015210	rnaseh1	89	37.638	Amphiprion_ocellaris
WBGene00004382	rnh-1.0	97	38.007	ENSAPEG00000014104	rnaseh1	89	37.638	Amphiprion_percula
WBGene00004382	rnh-1.0	97	37.313	ENSATEG00000000598	rnaseh1	95	37.313	Anabas_testudineus
WBGene00004382	rnh-1.0	89	39.247	ENSAPLG00000001961	RNASEH1	99	37.795	Anas_platyrhynchos
WBGene00004382	rnh-1.0	95	32.877	ENSACAG00000016857	rnaseh1	90	32.877	Anolis_carolinensis
WBGene00004382	rnh-1.0	95	42.353	ENSANAG00000024055	RNASEH1	89	42.353	Aotus_nancymaae
WBGene00004382	rnh-1.0	97	36.264	ENSACLG00000006741	rnaseh1	88	36.264	Astatotilapia_calliptera
WBGene00004382	rnh-1.0	98	37.918	ENSAMXG00000042940	rnaseh1	99	37.918	Astyanax_mexicanus
WBGene00004382	rnh-1.0	95	40.711	ENSBTAG00000016235	RNASEH1	90	40.711	Bos_taurus
WBGene00004382	rnh-1.0	95	40.927	ENSCJAG00000035450	RNASEH1	89	40.927	Callithrix_jacchus
WBGene00004382	rnh-1.0	95	41.797	ENSCAFG00000003259	RNASEH1	89	41.797	Canis_familiaris
WBGene00004382	rnh-1.0	72	47.183	ENSCAFG00020004994	RNASEH1	92	47.183	Canis_lupus_dingo
WBGene00004382	rnh-1.0	87	32.328	ENSCHIG00000022230	-	98	32.328	Capra_hircus
WBGene00004382	rnh-1.0	95	42.292	ENSCHIG00000022264	-	89	42.292	Capra_hircus
WBGene00004382	rnh-1.0	95	41.176	ENSTSYG00000012926	RNASEH1	88	41.176	Carlito_syrichta
WBGene00004382	rnh-1.0	89	40.084	ENSCAPG00000004813	RNASEH1	98	40.084	Cavia_aperea
WBGene00004382	rnh-1.0	95	40.711	ENSCPOG00000022278	Rnaseh1	86	40.711	Cavia_porcellus
WBGene00004382	rnh-1.0	95	41.634	ENSCCAG00000038017	RNASEH1	89	41.634	Cebus_capucinus
WBGene00004382	rnh-1.0	95	36.047	ENSCATG00000016818	-	89	36.047	Cercocebus_atys
WBGene00004382	rnh-1.0	95	40.684	ENSCATG00000016515	-	89	40.684	Cercocebus_atys
WBGene00004382	rnh-1.0	95	39.921	ENSCLAG00000002440	RNASEH1	89	39.921	Chinchilla_lanigera
WBGene00004382	rnh-1.0	95	41.065	ENSCSAG00000006943	RNASEH1	89	41.065	Chlorocebus_sabaeus
WBGene00004382	rnh-1.0	72	46.479	ENSCHOG00000008547	RNASEH1	70	46.479	Choloepus_hoffmanni
WBGene00004382	rnh-1.0	95	36.604	ENSCPBG00000021620	RNASEH1	98	36.604	Chrysemys_picta_bellii
WBGene00004382	rnh-1.0	96	38.007	ENSCING00000014054	-	92	38.007	Ciona_intestinalis
WBGene00004382	rnh-1.0	79	35.455	ENSCSAVG00000000009	-	95	35.455	Ciona_savignyi
WBGene00004382	rnh-1.0	95	40.684	ENSCANG00000037763	RNASEH1	89	40.684	Colobus_angolensis_palliatus
WBGene00004382	rnh-1.0	95	40.551	ENSCGRG00001008950	Rnaseh1	89	40.551	Cricetulus_griseus_chok1gshd
WBGene00004382	rnh-1.0	95	40.551	ENSCGRG00000006029	Rnaseh1	89	40.551	Cricetulus_griseus_crigri
WBGene00004382	rnh-1.0	97	37.402	ENSCSEG00000005741	rnaseh1	94	35.897	Cynoglossus_semilaevis
WBGene00004382	rnh-1.0	95	35.496	ENSCVAG00000018717	rnaseh1	87	35.496	Cyprinodon_variegatus
WBGene00004382	rnh-1.0	96	39.552	ENSDARG00000042571	rnaseh1	97	39.552	Danio_rerio
WBGene00004382	rnh-1.0	95	40.698	ENSDNOG00000016056	RNASEH1	89	40.698	Dasypus_novemcinctus
WBGene00004382	rnh-1.0	95	38.735	ENSDORG00000000704	Rnaseh1	89	38.735	Dipodomys_ordii
WBGene00004382	rnh-1.0	98	32.886	FBgn0023171	rnh1	94	32.886	Drosophila_melanogaster
WBGene00004382	rnh-1.0	98	37.548	ENSETEG00000012674	RNASEH1	91	37.548	Echinops_telfairi
WBGene00004382	rnh-1.0	95	35.458	ENSEBUG00000006116	rnaseh1	77	35.458	Eptatretus_burgeri
WBGene00004382	rnh-1.0	96	31.834	ENSEBUG00000008898	rnaseh1	98	31.834	Eptatretus_burgeri
WBGene00004382	rnh-1.0	95	41.085	ENSEASG00005022200	RNASEH1	87	41.085	Equus_asinus_asinus
WBGene00004382	rnh-1.0	95	41.085	ENSECAG00000020695	RNASEH1	87	41.085	Equus_caballus
WBGene00004382	rnh-1.0	95	36.567	ENSELUG00000010112	rnaseh1	89	36.567	Esox_lucius
WBGene00004382	rnh-1.0	95	39.464	ENSFCAG00000025832	RNASEH1	89	39.464	Felis_catus
WBGene00004382	rnh-1.0	95	37.132	ENSFALG00000002069	RNASEH1	91	37.132	Ficedula_albicollis
WBGene00004382	rnh-1.0	95	40.316	ENSFDAG00000002035	RNASEH1	79	40.316	Fukomys_damarensis
WBGene00004382	rnh-1.0	99	36.538	ENSGMOG00000013818	rnaseh1	92	36.538	Gadus_morhua
WBGene00004382	rnh-1.0	95	38.951	ENSGALG00000016389	RNASEH1	91	38.951	Gallus_gallus
WBGene00004382	rnh-1.0	95	35.741	ENSGAFG00000001776	rnaseh1	89	35.741	Gambusia_affinis
WBGene00004382	rnh-1.0	100	38.235	ENSGACG00000011935	rnaseh1	92	38.235	Gasterosteus_aculeatus
WBGene00004382	rnh-1.0	96	37.546	ENSGAGG00000009150	RNASEH1	61	37.546	Gopherus_agassizii
WBGene00004382	rnh-1.0	95	39.179	ENSGGOG00000034822	RNASEH1	89	39.179	Gorilla_gorilla
WBGene00004382	rnh-1.0	97	36.264	ENSHBUG00000004666	rnaseh1	88	36.264	Haplochromis_burtoni
WBGene00004382	rnh-1.0	95	40.316	ENSHGLG00000002585	Rnaseh1	82	40.316	Heterocephalus_glaber_female
WBGene00004382	rnh-1.0	95	40.316	ENSHGLG00100005105	Rnaseh1	82	40.316	Heterocephalus_glaber_male
WBGene00004382	rnh-1.0	97	36.029	ENSHCOG00000012329	rnaseh1	89	35.740	Hippocampus_comes
WBGene00004382	rnh-1.0	97	39.844	ENSIPUG00000023060	rnaseh1	98	39.844	Ictalurus_punctatus
WBGene00004382	rnh-1.0	95	39.098	ENSSTOG00000012774	RNASEH1	91	39.098	Ictidomys_tridecemlineatus
WBGene00004382	rnh-1.0	86	40.088	ENSJJAG00000020238	Rnaseh1	89	40.088	Jaculus_jaculus
WBGene00004382	rnh-1.0	95	39.841	ENSJJAG00000021481	-	89	39.841	Jaculus_jaculus
WBGene00004382	rnh-1.0	95	35.391	ENSJJAG00000008994	-	90	35.391	Jaculus_jaculus
WBGene00004382	rnh-1.0	97	37.931	ENSKMAG00000001373	rnaseh1	89	37.931	Kryptolebias_marmoratus
WBGene00004382	rnh-1.0	97	36.330	ENSLBEG00000004480	rnaseh1	97	36.330	Labrus_bergylta
WBGene00004382	rnh-1.0	95	38.828	ENSLACG00000007100	RNASEH1	87	39.194	Latimeria_chalumnae
WBGene00004382	rnh-1.0	97	38.043	ENSLOCG00000017212	rnaseh1	98	38.710	Lepisosteus_oculatus
WBGene00004382	rnh-1.0	95	40.392	ENSLAFG00000015091	RNASEH1	89	40.392	Loxodonta_africana
WBGene00004382	rnh-1.0	96	40.755	ENSMFAG00000000063	-	90	40.755	Macaca_fascicularis
WBGene00004382	rnh-1.0	95	36.471	ENSMFAG00000002323	-	89	36.471	Macaca_fascicularis
WBGene00004382	rnh-1.0	95	37.805	ENSMMUG00000019280	-	89	37.805	Macaca_mulatta
WBGene00004382	rnh-1.0	96	40.755	ENSMNEG00000040183	-	90	40.755	Macaca_nemestrina
WBGene00004382	rnh-1.0	95	37.398	ENSMNEG00000029676	-	89	37.398	Macaca_nemestrina
WBGene00004382	rnh-1.0	89	38.462	ENSMLEG00000039352	-	98	38.462	Mandrillus_leucophaeus
WBGene00004382	rnh-1.0	95	38.189	ENSMLEG00000028662	-	89	38.189	Mandrillus_leucophaeus
WBGene00004382	rnh-1.0	97	40.149	ENSMAMG00000019725	rnaseh1	95	40.149	Mastacembelus_armatus
WBGene00004382	rnh-1.0	97	36.264	ENSMZEG00005013006	rnaseh1	88	36.264	Maylandia_zebra
WBGene00004382	rnh-1.0	84	38.618	ENSMGAG00000013979	RNASEH1	98	38.618	Meleagris_gallopavo
WBGene00004382	rnh-1.0	95	41.732	ENSMAUG00000014957	Rnaseh1	89	41.732	Mesocricetus_auratus
WBGene00004382	rnh-1.0	95	41.897	ENSMICG00000033156	RNASEH1	88	41.897	Microcebus_murinus
WBGene00004382	rnh-1.0	95	41.634	ENSMOCG00000015522	Rnaseh1	89	41.634	Microtus_ochrogaster
WBGene00004382	rnh-1.0	97	37.453	ENSMMOG00000015902	rnaseh1	89	37.453	Mola_mola
WBGene00004382	rnh-1.0	95	42.460	ENSMODG00000014491	-	88	42.460	Monodelphis_domestica
WBGene00004382	rnh-1.0	74	42.857	ENSMODG00000028814	-	60	42.857	Monodelphis_domestica
WBGene00004382	rnh-1.0	98	39.271	ENSMALG00000010565	rnaseh1	90	37.546	Monopterus_albus
WBGene00004382	rnh-1.0	95	41.339	MGP_CAROLIEiJ_G0017660	Rnaseh1	89	41.339	Mus_caroli
WBGene00004382	rnh-1.0	95	41.176	ENSMUSG00000020630	Rnaseh1	89	41.176	Mus_musculus
WBGene00004382	rnh-1.0	95	42.126	MGP_PahariEiJ_G0029418	Rnaseh1	89	42.126	Mus_pahari
WBGene00004382	rnh-1.0	95	41.339	MGP_SPRETEiJ_G0018502	Rnaseh1	89	41.339	Mus_spretus
WBGene00004382	rnh-1.0	72	47.183	ENSMPUG00000012984	RNASEH1	69	47.183	Mustela_putorius_furo
WBGene00004382	rnh-1.0	95	40.625	ENSNGAG00000015966	Rnaseh1	84	40.625	Nannospalax_galili
WBGene00004382	rnh-1.0	97	36.630	ENSNBRG00000008739	rnaseh1	88	36.630	Neolamprologus_brichardi
WBGene00004382	rnh-1.0	95	35.798	ENSNLEG00000015400	RNASEH1	87	35.798	Nomascus_leucogenys
WBGene00004382	rnh-1.0	89	37.931	ENSNLEG00000000059	-	90	37.931	Nomascus_leucogenys
WBGene00004382	rnh-1.0	69	35.870	ENSMEUG00000003610	-	65	35.870	Notamacropus_eugenii
WBGene00004382	rnh-1.0	95	39.608	ENSOPRG00000005072	RNASEH1	89	39.608	Ochotona_princeps
WBGene00004382	rnh-1.0	95	40.562	ENSODEG00000000235	Rnaseh1	86	40.562	Octodon_degus
WBGene00004382	rnh-1.0	97	36.996	ENSONIG00000018697	rnaseh1	98	36.996	Oreochromis_niloticus
WBGene00004382	rnh-1.0	95	39.608	ENSOCUG00000006117	RNASEH1	89	39.608	Oryctolagus_cuniculus
WBGene00004382	rnh-1.0	100	35.401	ENSORLG00000018127	rnaseh1	98	35.766	Oryzias_latipes
WBGene00004382	rnh-1.0	100	35.401	ENSORLG00020013660	rnaseh1	91	35.793	Oryzias_latipes_hni
WBGene00004382	rnh-1.0	100	35.401	ENSORLG00015011338	rnaseh1	91	36.162	Oryzias_latipes_hsok
WBGene00004382	rnh-1.0	87	33.755	ENSOMEG00000004710	rnaseh1	90	33.755	Oryzias_melastigma
WBGene00004382	rnh-1.0	95	41.016	ENSOGAG00000017176	RNASEH1	89	41.016	Otolemur_garnettii
WBGene00004382	rnh-1.0	95	38.168	ENSOARG00000005386	RNASEH1	89	38.168	Ovis_aries
WBGene00004382	rnh-1.0	95	40.684	ENSPPAG00000034221	RNASEH1	89	40.684	Pan_paniscus
WBGene00004382	rnh-1.0	95	39.464	ENSPPRG00000015513	RNASEH1	89	39.464	Panthera_pardus
WBGene00004382	rnh-1.0	89	39.662	ENSPTIG00000019034	RNASEH1	83	39.662	Panthera_tigris_altaica
WBGene00004382	rnh-1.0	87	34.177	ENSPTRG00000043403	-	89	34.177	Pan_troglodytes
WBGene00004382	rnh-1.0	95	40.684	ENSPTRG00000011614	RNASEH1	89	40.684	Pan_troglodytes
WBGene00004382	rnh-1.0	95	40.684	ENSPANG00000000443	RNASEH1	98	40.323	Papio_anubis
WBGene00004382	rnh-1.0	95	36.220	ENSPANG00000018246	-	88	36.220	Papio_anubis
WBGene00004382	rnh-1.0	97	36.842	ENSPKIG00000003146	rnaseh1	99	38.577	Paramormyrops_kingsleyae
WBGene00004382	rnh-1.0	95	38.043	ENSPSIG00000002937	RNASEH1	98	37.218	Pelodiscus_sinensis
WBGene00004382	rnh-1.0	97	39.357	ENSPMGG00000017463	rnaseh1	93	38.911	Periophthalmus_magnuspinnatus
WBGene00004382	rnh-1.0	95	39.844	ENSPEMG00000022465	-	89	41.016	Peromyscus_maniculatus_bairdii
WBGene00004382	rnh-1.0	71	34.752	ENSPCIG00000026047	-	79	35.000	Phascolarctos_cinereus
WBGene00004382	rnh-1.0	95	37.945	ENSPCIG00000023334	-	88	37.945	Phascolarctos_cinereus
WBGene00004382	rnh-1.0	95	35.878	ENSPFOG00000002841	rnaseh1	89	35.878	Poecilia_formosa
WBGene00004382	rnh-1.0	57	33.333	ENSPLAG00000021349	-	65	33.333	Poecilia_latipinna
WBGene00004382	rnh-1.0	95	35.496	ENSPMEG00000016826	rnaseh1	89	35.496	Poecilia_mexicana
WBGene00004382	rnh-1.0	95	35.793	ENSPREG00000012197	rnaseh1	89	35.793	Poecilia_reticulata
WBGene00004382	rnh-1.0	87	37.607	ENSPPYG00000008067	-	90	37.607	Pongo_abelii
WBGene00004382	rnh-1.0	95	37.349	ENSPPYG00000025873	RNASEH1	88	37.349	Pongo_abelii
WBGene00004382	rnh-1.0	95	41.473	ENSPCAG00000002500	RNASEH1	89	41.473	Procavia_capensis
WBGene00004382	rnh-1.0	95	41.502	ENSPCOG00000019444	RNASEH1	88	41.502	Propithecus_coquereli
WBGene00004382	rnh-1.0	98	39.231	ENSPVAG00000002070	RNASEH1	91	39.231	Pteropus_vampyrus
WBGene00004382	rnh-1.0	97	36.264	ENSPNYG00000001292	rnaseh1	88	36.264	Pundamilia_nyererei
WBGene00004382	rnh-1.0	97	39.922	ENSPNAG00000022344	rnaseh1	91	39.922	Pygocentrus_nattereri
WBGene00004382	rnh-1.0	95	40.856	ENSRNOG00000008584	Rnaseh1	89	41.176	Rattus_norvegicus
WBGene00004382	rnh-1.0	95	40.304	ENSRBIG00000034222	RNASEH1	88	40.304	Rhinopithecus_bieti
WBGene00004382	rnh-1.0	95	40.304	ENSRROG00000041761	RNASEH1	88	40.304	Rhinopithecus_roxellana
WBGene00004382	rnh-1.0	97	38.750	YMR234W	-	96	30.909	Saccharomyces_cerevisiae
WBGene00004382	rnh-1.0	95	41.245	ENSSBOG00000025411	RNASEH1	89	41.245	Saimiri_boliviensis_boliviensis
WBGene00004382	rnh-1.0	98	39.098	ENSSHAG00000013051	RNASEH1	89	39.098	Sarcophilus_harrisii
WBGene00004382	rnh-1.0	97	38.211	ENSSFOG00015002709	rnaseh1	91	40.081	Scleropages_formosus
WBGene00004382	rnh-1.0	97	37.729	ENSSMAG00000007586	rnaseh1	88	38.828	Scophthalmus_maximus
WBGene00004382	rnh-1.0	99	36.131	ENSSDUG00000008217	rnaseh1	97	36.131	Seriola_dumerili
WBGene00004382	rnh-1.0	99	34.703	ENSSLDG00000000442	rnaseh1	95	35.573	Seriola_lalandi_dorsalis
WBGene00004382	rnh-1.0	95	35.606	ENSSPUG00000006644	RNASEH1	91	35.606	Sphenodon_punctatus
WBGene00004382	rnh-1.0	97	37.638	ENSSPAG00000009353	rnaseh1	89	37.269	Stegastes_partitus
WBGene00004382	rnh-1.0	95	40.392	ENSSSCG00000025305	RNASEH1	89	40.392	Sus_scrofa
WBGene00004382	rnh-1.0	95	37.624	ENSTGUG00000012980	RNASEH1	92	36.131	Taeniopygia_guttata
WBGene00004382	rnh-1.0	97	35.316	ENSTRUG00000015774	rnaseh1	96	35.316	Takifugu_rubripes
WBGene00004382	rnh-1.0	97	38.722	ENSTNIG00000010715	rnaseh1	96	38.722	Tetraodon_nigroviridis
WBGene00004382	rnh-1.0	95	39.844	ENSTTRG00000001615	RNASEH1	89	39.844	Tursiops_truncatus
WBGene00004382	rnh-1.0	72	47.183	ENSUAMG00000018254	RNASEH1	74	47.183	Ursus_americanus
WBGene00004382	rnh-1.0	71	40.206	ENSUMAG00000003941	RNASEH1	64	40.206	Ursus_maritimus
WBGene00004382	rnh-1.0	95	35.433	ENSVPAG00000011589	RNASEH1	89	35.433	Vicugna_pacos
WBGene00004382	rnh-1.0	95	42.188	ENSVVUG00000008633	RNASEH1	80	42.188	Vulpes_vulpes
WBGene00004382	rnh-1.0	96	37.173	ENSXETG00000001212	rnaseh1	99	33.891	Xenopus_tropicalis
WBGene00004382	rnh-1.0	95	34.874	ENSXETG00000030371	-	99	34.874	Xenopus_tropicalis
WBGene00004382	rnh-1.0	95	37.786	ENSXMAG00000002357	rnaseh1	89	37.786	Xiphophorus_maculatus