EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
WBGene00004389 (Gene tree)
Gene ID
-
Gene Symbol
rnp-6
Alias
-
Full Name
RNP (RRM RNA binding domain) containing
Gene Type
protein_coding
Species
Caenorhabditis_elegans
Status
putative
Strand
Minus strand
Length
7351 bases
Position
chrI:3539554-3546904
Accession
Q9N3S3
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
Y47G6ARRM_1PF00076.222.2e-4013
Y47G6ARRM_1PF00076.222.2e-4023
Y47G6ARRM_1PF00076.222.2e-4033
Y47G6ARRM_1PF00076.221.1e-3312
Y47G6ARRM_1PF00076.221.1e-3322
Y47G6ARRM_1PF00076.221.1e-3312
Y47G6ARRM_1PF00076.221.1e-3322
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
Y47G6A.20a-1109NM_058776Y47G6A.20a339 (aa)NP_491177Q9N3S3
Y47G6A.20b-2353NM_058775Y47G6A.20b749 (aa)NP_491176Q9N3S4
Y47G6A.20c-1143NM_170843Y47G6A.20c346 (aa)NP_740829Q8MXS9
Gene Model
Click here to download WBGene00004389's gene model file
Protein-Protein Interaction (PPI)

Clik here to download WBGene00004389's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
WBGene00004389rnp-66033.708WBGene00012904tiar-25636.709
WBGene00004389rnp-65530.220WBGene00015943tiar-16430.220
WBGene00004389rnp-67638.889WBGene00003903pab-25436.905
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
WBGene00004389rnp-68353.497ENSG00000179950PUF608949.032Homo_sapiens
WBGene00004389rnp-68354.355ENSAPOG00000001713puf60b8251.325Acanthochromis_polyacanthus
WBGene00004389rnp-68349.505ENSAMEG00000006406PUF607250.178Ailuropoda_melanoleuca
WBGene00004389rnp-68352.303ENSACIG00000021705puf60b8150.667Amphilophus_citrinellus
WBGene00004389rnp-68344.755ENSACIG00000003263-7847.200Amphilophus_citrinellus
WBGene00004389rnp-68354.355ENSAOCG00000005395puf60b7853.357Amphiprion_ocellaris
WBGene00004389rnp-68350.825ENSAOCG00000015558-7850.865Amphiprion_ocellaris
WBGene00004389rnp-68949.673ENSAPEG00000011923puf60b8148.675Amphiprion_percula
WBGene00004389rnp-67954.815ENSAPEG00000001836-7155.078Amphiprion_percula
WBGene00004389rnp-68950.464ENSATEG00000001730puf60b8248.903Anabas_testudineus
WBGene00004389rnp-68349.505ENSATEG00000006303-7849.827Anabas_testudineus
WBGene00004389rnp-68351.485ENSAPLG00000010150PUF608050.667Anas_platyrhynchos
WBGene00004389rnp-68252.013ENSACAG00000001645PUF608049.221Anolis_carolinensis
WBGene00004389rnp-68650.962ENSANAG00000018626PUF608250.162Aotus_nancymaae
WBGene00004389rnp-68354.704ENSACLG00000004462puf60b8053.710Astatotilapia_calliptera
WBGene00004389rnp-69051.592ENSAMXG00000036570puf60a8151.634Astyanax_mexicanus
WBGene00004389rnp-67554.054ENSAMXG00000041030puf60b7352.747Astyanax_mexicanus
WBGene00004389rnp-68353.497ENSBTAG00000037493PUF607950.667Bos_taurus
WBGene00004389rnp-68353.497ENSCJAG00000021485PUF608050.162Callithrix_jacchus
WBGene00004389rnp-68949.845ENSCAFG00000001400PUF607750.825Canis_familiaris
WBGene00004389rnp-68353.497ENSCAFG00020018754PUF608050.162Canis_lupus_dingo
WBGene00004389rnp-68351.485ENSCHIG00000001618PUF606950.667Capra_hircus
WBGene00004389rnp-68951.266ENSTSYG00000011912PUF608250.162Carlito_syrichta
WBGene00004389rnp-68353.497ENSCPOG00000014613PUF607452.650Cavia_porcellus
WBGene00004389rnp-68948.297ENSCCAG00000007744PUF608050.162Cebus_capucinus
WBGene00004389rnp-68353.497ENSCATG00000035405PUF608050.162Cercocebus_atys
WBGene00004389rnp-68353.497ENSCLAG00000009154PUF607650.825Chinchilla_lanigera
WBGene00004389rnp-68351.485ENSCSAG00000008878PUF608250.162Chlorocebus_sabaeus
WBGene00004389rnp-68351.485ENSCPBG00000005595PUF608050.162Chrysemys_picta_bellii
WBGene00004389rnp-68347.038ENSCING00000002156-7546.454Ciona_intestinalis
WBGene00004389rnp-66945.312ENSCING00000008436-7644.141Ciona_intestinalis
WBGene00004389rnp-68141.967ENSCSAVG00000001385-8643.382Ciona_savignyi
WBGene00004389rnp-67048.739ENSCSAVG00000004765-7948.739Ciona_savignyi
WBGene00004389rnp-68650.962ENSCANG00000041843PUF607250.000Colobus_angolensis_palliatus
WBGene00004389rnp-68353.497ENSCGRG00001017442Puf607352.650Cricetulus_griseus_chok1gshd
WBGene00004389rnp-68351.485ENSCGRG00000003717Puf607450.667Cricetulus_griseus_crigri
WBGene00004389rnp-68351.974ENSCSEG00000019887puf60b7450.333Cynoglossus_semilaevis
WBGene00004389rnp-67153.909ENSCSEG00000014845-7451.648Cynoglossus_semilaevis
WBGene00004389rnp-68354.704ENSCVAG00000009386puf60b8053.710Cyprinodon_variegatus
WBGene00004389rnp-67256.327ENSCVAG00000001560-7158.371Cyprinodon_variegatus
WBGene00004389rnp-68253.546ENSDARG00000001241puf60b9653.390Danio_rerio
WBGene00004389rnp-68650.784ENSDARG00000032175puf60a9848.117Danio_rerio
WBGene00004389rnp-67146.058ENSDNOG00000043278PUF605947.200Dasypus_novemcinctus
WBGene00004389rnp-68353.497ENSDORG00000004585Puf607552.650Dipodomys_ordii
WBGene00004389rnp-69551.534FBgn0028577hfp7552.347Drosophila_melanogaster
WBGene00004389rnp-67253.815ENSEBUG00000005470-8247.619Eptatretus_burgeri
WBGene00004389rnp-68747.756ENSEBUG00000014291puf60b6847.788Eptatretus_burgeri
WBGene00004389rnp-68353.497ENSEASG00005009695PUF608050.162Equus_asinus_asinus
WBGene00004389rnp-68650.962ENSECAG00000024681PUF607950.162Equus_caballus
WBGene00004389rnp-69049.080ENSELUG00000006507puf60b7847.516Esox_lucius
WBGene00004389rnp-68652.703ENSELUG00000018443-8451.773Esox_lucius
WBGene00004389rnp-68353.497ENSFCAG00000001045PUF608150.667Felis_catus
WBGene00004389rnp-68642.308ENSFALG00000001136PUF608047.200Ficedula_albicollis
WBGene00004389rnp-68951.961ENSFDAG00000017177PUF607651.155Fukomys_damarensis
WBGene00004389rnp-68850.779ENSFHEG00000020046puf60b8053.710Fundulus_heteroclitus
WBGene00004389rnp-68149.158ENSFHEG00000021687PUF608051.087Fundulus_heteroclitus
WBGene00004389rnp-68339.161ENSGMOG00000006392puf60b7846.400Gadus_morhua
WBGene00004389rnp-68650.962ENSGALG00000039901PUF608249.679Gallus_gallus
WBGene00004389rnp-68751.678ENSGAFG00000004334-8053.676Gambusia_affinis
WBGene00004389rnp-68850.779ENSGAFG00000021040puf60b8150.667Gambusia_affinis
WBGene00004389rnp-67249.810ENSGACG00000001484-8744.940Gasterosteus_aculeatus
WBGene00004389rnp-68835.777ENSGACG00000004717puf60b8246.400Gasterosteus_aculeatus
WBGene00004389rnp-68353.497ENSGAGG00000013289PUF607252.650Gopherus_agassizii
WBGene00004389rnp-68353.497ENSGGOG00000004646PUF608050.162Gorilla_gorilla
WBGene00004389rnp-68352.797ENSHBUG00000009634-7952.574Haplochromis_burtoni
WBGene00004389rnp-68850.779ENSHBUG00000015118puf60b8053.710Haplochromis_burtoni
WBGene00004389rnp-68951.961ENSHGLG00000006111PUF607651.155Heterocephalus_glaber_female
WBGene00004389rnp-68951.961ENSHGLG00100012362PUF607651.155Heterocephalus_glaber_male
WBGene00004389rnp-67554.440ENSHCOG00000015541puf60b9146.400Hippocampus_comes
WBGene00004389rnp-68146.104ENSHCOG00000000378-8846.939Hippocampus_comes
WBGene00004389rnp-68951.961ENSIPUG00000002453puf60a8348.571Ictalurus_punctatus
WBGene00004389rnp-68353.310ENSIPUG00000004660puf60b7352.650Ictalurus_punctatus
WBGene00004389rnp-68351.485ENSSTOG00000025037PUF607849.062Ictidomys_tridecemlineatus
WBGene00004389rnp-68353.497ENSJJAG00000001076Puf607352.650Jaculus_jaculus
WBGene00004389rnp-67151.923ENSKMAG00000010106-8149.338Kryptolebias_marmoratus
WBGene00004389rnp-68352.303ENSKMAG00000016745puf60b8150.667Kryptolebias_marmoratus
WBGene00004389rnp-68848.598ENSLBEG00000012505puf60b8547.200Labrus_bergylta
WBGene00004389rnp-67156.017ENSLACG00000005456PUF606156.410Latimeria_chalumnae
WBGene00004389rnp-68950.155ENSLOCG00000010106puf60b8248.734Lepisosteus_oculatus
WBGene00004389rnp-68949.536ENSLAFG00000022929PUF607848.750Loxodonta_africana
WBGene00004389rnp-68353.497ENSMFAG00000043373PUF608050.162Macaca_fascicularis
WBGene00004389rnp-68353.497ENSMMUG00000013558PUF608050.162Macaca_mulatta
WBGene00004389rnp-68353.497ENSMNEG00000031099PUF608050.162Macaca_nemestrina
WBGene00004389rnp-68353.497ENSMLEG00000040009PUF608052.650Mandrillus_leucophaeus
WBGene00004389rnp-68852.303ENSMAMG00000010394puf60b9346.400Mastacembelus_armatus
WBGene00004389rnp-68350.495ENSMAMG00000019476-7750.865Mastacembelus_armatus
WBGene00004389rnp-68349.835ENSMZEG00005019425-7749.827Maylandia_zebra
WBGene00004389rnp-68354.704ENSMZEG00005018515puf60b8053.710Maylandia_zebra
WBGene00004389rnp-68650.962ENSMGAG00000013070PUF608250.485Meleagris_gallopavo
WBGene00004389rnp-68353.497ENSMAUG00000014267-7152.448Mesocricetus_auratus
WBGene00004389rnp-67943.165ENSMAUG00000018549-7444.318Mesocricetus_auratus
WBGene00004389rnp-68452.041ENSMICG00000012226PUF608050.162Microcebus_murinus
WBGene00004389rnp-68353.497ENSMOCG00000018780Puf607352.650Microtus_ochrogaster
WBGene00004389rnp-68351.974ENSMMOG00000004217puf60b8150.333Mola_mola
WBGene00004389rnp-68948.845ENSMMOG00000018059-9247.287Mola_mola
WBGene00004389rnp-68353.497ENSMODG00000009161PUF607849.062Monodelphis_domestica
WBGene00004389rnp-67549.624ENSMALG00000006797puf60b7747.744Monopterus_albus
WBGene00004389rnp-68349.013ENSMALG00000000200-7849.827Monopterus_albus
WBGene00004389rnp-68951.634MGP_CAROLIEiJ_G0019910Puf607650.825Mus_caroli
WBGene00004389rnp-68951.634ENSMUSG00000002524Puf607650.825Mus_musculus
WBGene00004389rnp-68951.634MGP_PahariEiJ_G0019920Puf607650.825Mus_pahari
WBGene00004389rnp-68951.634MGP_SPRETEiJ_G0020812Puf607650.825Mus_spretus
WBGene00004389rnp-68351.815ENSMPUG00000008137PUF607351.000Mustela_putorius_furo
WBGene00004389rnp-68949.845ENSMLUG00000000238-7550.162Myotis_lucifugus
WBGene00004389rnp-68651.525ENSMLUG00000013032-7950.685Myotis_lucifugus
WBGene00004389rnp-68353.497ENSNGAG00000000712Puf608150.667Nannospalax_galili
WBGene00004389rnp-68349.835ENSNBRG00000017223-7849.827Neolamprologus_brichardi
WBGene00004389rnp-68352.632ENSNBRG00000013047puf60b7842.593Neolamprologus_brichardi
WBGene00004389rnp-68353.497ENSNLEG00000002156PUF607952.055Nomascus_leucogenys
WBGene00004389rnp-67551.812ENSOPRG00000002147PUF607250.690Ochotona_princeps
WBGene00004389rnp-66837.229ENSODEG00000015513-6439.200Octodon_degus
WBGene00004389rnp-68353.497ENSODEG00000014024-7350.654Octodon_degus
WBGene00004389rnp-68950.774ENSONIG00000006247puf60b8249.216Oreochromis_niloticus
WBGene00004389rnp-69048.000ENSONIG00000014030-8148.065Oreochromis_niloticus
WBGene00004389rnp-66151.724ENSOANG00000006962PUF607049.776Ornithorhynchus_anatinus
WBGene00004389rnp-68354.704ENSORLG00000012279puf60b7853.710Oryzias_latipes
WBGene00004389rnp-69047.416ENSORLG00000028655-9648.000Oryzias_latipes
WBGene00004389rnp-68947.678ENSORLG00020018144-8049.020Oryzias_latipes_hni
WBGene00004389rnp-68352.303ENSORLG00020007333puf608150.667Oryzias_latipes_hni
WBGene00004389rnp-68947.678ENSORLG00015016833-8049.020Oryzias_latipes_hsok
WBGene00004389rnp-68352.303ENSORLG00015007718puf60b8150.667Oryzias_latipes_hsok
WBGene00004389rnp-69050.649ENSOMEG00000022185-7951.203Oryzias_melastigma
WBGene00004389rnp-68354.704ENSOMEG00000001643puf60b9046.400Oryzias_melastigma
WBGene00004389rnp-68351.485ENSOGAG00000006259PUF607450.667Otolemur_garnettii
WBGene00004389rnp-67153.307ENSOARG00000016235PUF607950.338Ovis_aries
WBGene00004389rnp-68353.497ENSPPAG00000029933PUF608050.162Pan_paniscus
WBGene00004389rnp-68353.497ENSPPRG00000003257PUF608052.650Panthera_pardus
WBGene00004389rnp-68353.497ENSPTIG00000009795PUF607950.338Panthera_tigris_altaica
WBGene00004389rnp-68951.634ENSPTRG00000043963-8050.162Pan_troglodytes
WBGene00004389rnp-68353.497ENSPTRG00000020670PUF608050.162Pan_troglodytes
WBGene00004389rnp-68353.497ENSPANG00000021936PUF608050.162Papio_anubis
WBGene00004389rnp-68852.303ENSPKIG00000012204puf60b8251.333Paramormyrops_kingsleyae
WBGene00004389rnp-69052.258ENSPKIG00000004295puf60a9049.201Paramormyrops_kingsleyae
WBGene00004389rnp-68351.485ENSPSIG00000004679PUF608050.162Pelodiscus_sinensis
WBGene00004389rnp-68354.514ENSPMGG00000013444puf60b8053.521Periophthalmus_magnuspinnatus
WBGene00004389rnp-68353.497ENSPEMG00000008820Puf607352.650Peromyscus_maniculatus_bairdii
WBGene00004389rnp-65956.471ENSPMAG00000009884puf60b9358.228Petromyzon_marinus
WBGene00004389rnp-68650.962ENSPCIG00000020270PUF608050.162Phascolarctos_cinereus
WBGene00004389rnp-68952.941ENSPFOG00000019217puf60b8251.987Poecilia_formosa
WBGene00004389rnp-68748.889ENSPFOG00000011118-7850.519Poecilia_formosa
WBGene00004389rnp-68354.704ENSPLAG00000010754puf60b8053.710Poecilia_latipinna
WBGene00004389rnp-68748.571ENSPLAG00000017025-7250.173Poecilia_latipinna
WBGene00004389rnp-68850.779ENSPMEG00000000838puf60b8053.710Poecilia_mexicana
WBGene00004389rnp-69646.377ENSPMEG00000009767-7948.000Poecilia_mexicana
WBGene00004389rnp-68354.704ENSPREG00000005440puf60b9346.400Poecilia_reticulata
WBGene00004389rnp-68648.553ENSPPYG00000018951-6848.185Pongo_abelii
WBGene00004389rnp-68650.962ENSPCAG00000014837PUF607250.000Procavia_capensis
WBGene00004389rnp-68353.497ENSPCOG00000027981PUF608050.162Propithecus_coquereli
WBGene00004389rnp-68349.835ENSPNYG00000004273-7749.827Pundamilia_nyererei
WBGene00004389rnp-68352.303ENSPNYG00000002556puf60b8150.667Pundamilia_nyererei
WBGene00004389rnp-68851.623ENSPNAG00000019909puf60a8251.667Pygocentrus_nattereri
WBGene00004389rnp-67554.054ENSPNAG00000019415puf60b6752.747Pygocentrus_nattereri
WBGene00004389rnp-68951.634ENSRNOG00000009960Puf607650.825Rattus_norvegicus
WBGene00004389rnp-68353.497ENSRBIG00000035274PUF608050.162Rhinopithecus_bieti
WBGene00004389rnp-68353.497ENSRROG00000029360PUF608050.162Rhinopithecus_roxellana
WBGene00004389rnp-68650.000ENSSBOG00000027089PUF607949.502Saimiri_boliviensis_boliviensis
WBGene00004389rnp-68351.485ENSSHAG00000006668PUF606856.923Sarcophilus_harrisii
WBGene00004389rnp-67952.431ENSSFOG00015019371puf60a8351.408Scleropages_formosus
WBGene00004389rnp-68354.196ENSSFOG00015019619puf60b8251.408Scleropages_formosus
WBGene00004389rnp-68049.829ENSSMAG00000016381puf60b7548.208Scophthalmus_maximus
WBGene00004389rnp-68354.355ENSSDUG00000009935puf60b9446.400Seriola_dumerili
WBGene00004389rnp-68350.495ENSSDUG00000007048-7550.519Seriola_dumerili
WBGene00004389rnp-68349.351ENSSLDG00000007366-7949.655Seriola_lalandi_dorsalis
WBGene00004389rnp-68351.974ENSSLDG00000024011puf60b9346.400Seriola_lalandi_dorsalis
WBGene00004389rnp-68245.017ENSSPUG00000013518PUF607843.643Sphenodon_punctatus
WBGene00004389rnp-67554.440ENSSPAG00000012144puf60b9346.400Stegastes_partitus
WBGene00004389rnp-68350.825ENSSPAG00000020285-7950.865Stegastes_partitus
WBGene00004389rnp-68652.881ENSSSCG00000038800PUF607956.710Sus_scrofa
WBGene00004389rnp-65758.788ENSTGUG00000016423-9659.494Taeniopygia_guttata
WBGene00004389rnp-68351.485ENSTGUG00000012797-8050.667Taeniopygia_guttata
WBGene00004389rnp-68353.004ENSTRUG00000008843-8053.160Takifugu_rubripes
WBGene00004389rnp-68950.464ENSTRUG00000005420puf60b9346.400Takifugu_rubripes
WBGene00004389rnp-68950.464ENSTNIG00000013675puf60b8348.903Tetraodon_nigroviridis
WBGene00004389rnp-68949.068ENSTNIG00000003069-8050.519Tetraodon_nigroviridis
WBGene00004389rnp-67156.017ENSTBEG00000002751-7556.410Tupaia_belangeri
WBGene00004389rnp-67243.784ENSTBEG00000001899-6451.667Tupaia_belangeri
WBGene00004389rnp-67551.812ENSTTRG00000017088PUF608249.838Tursiops_truncatus
WBGene00004389rnp-68353.497ENSUAMG00000024917PUF608050.162Ursus_americanus
WBGene00004389rnp-68649.679ENSUMAG00000000272PUF606950.690Ursus_maritimus
WBGene00004389rnp-68353.497ENSVVUG00000022527PUF608250.162Vulpes_vulpes
WBGene00004389rnp-68353.497ENSXETG00000012469puf607952.650Xenopus_tropicalis
WBGene00004389rnp-68354.704ENSXCOG00000012355puf60b8053.710Xiphophorus_couchianus
WBGene00004389rnp-68852.961ENSXMAG00000001862puf60b8150.667Xiphophorus_maculatus
WBGene00004389rnp-69050.000ENSXMAG00000010507-8250.859Xiphophorus_maculatus

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