EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00004405 (Gene tree)
Gene ID: -
Gene Symbol: rop-1
Alias: -
Full Name: 60 kDa SS-A/Ro ribonucleoprotein homolog
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Minus strand
Length: 2235 bases
Position: chrV:10252821-10255055
Accession: Q27274
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
C12D8	TROVE	PF05731.11	6.5e-92	1	1
C12D8	TROVE	PF05731.11	6.5e-92	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
C12D8.11.2	-	2035	NM_073237	C12D8.11.2	643 (aa)	NP_505638	Q27274
C12D8.11.1	-	2018	NM_073237	C12D8.11.1	643 (aa)	NP_505638	Q27274

Gene Model

Click here to download WBGene00004405's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00004405's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00004405	rop-1	91	36.457	ENSG00000116747	RO60	98	41.313	Homo_sapiens
WBGene00004405	rop-1	91	36.457	ENSAMEG00000015881	TROVE2	98	36.457	Ailuropoda_melanoleuca
WBGene00004405	rop-1	89	30.277	ENSATEG00000021195	trove2	96	30.093	Anabas_testudineus
WBGene00004405	rop-1	91	35.204	ENSAPLG00000003121	TROVE2	98	35.204	Anas_platyrhynchos
WBGene00004405	rop-1	91	36.224	ENSACAG00000008263	TROVE2	98	35.884	Anolis_carolinensis
WBGene00004405	rop-1	91	36.116	ENSANAG00000027305	TROVE2	98	36.116	Aotus_nancymaae
WBGene00004405	rop-1	93	30.565	ENSAMXG00000002118	trove2	99	30.399	Astyanax_mexicanus
WBGene00004405	rop-1	91	36.565	ENSBTAG00000013812	TROVE2	62	36.565	Bos_taurus
WBGene00004405	rop-1	91	35.945	ENSCJAG00000008566	TROVE2	98	35.945	Callithrix_jacchus
WBGene00004405	rop-1	92	36.409	ENSCAFG00000010552	TROVE2	97	36.409	Canis_familiaris
WBGene00004405	rop-1	91	36.689	ENSCAFG00020004457	TROVE2	99	36.689	Canis_lupus_dingo
WBGene00004405	rop-1	91	36.457	ENSCHIG00000018260	TROVE2	98	36.457	Capra_hircus
WBGene00004405	rop-1	91	36.116	ENSTSYG00000004227	TROVE2	99	36.348	Carlito_syrichta
WBGene00004405	rop-1	91	34.126	ENSCPOG00000000669	TROVE2	98	34.126	Cavia_porcellus
WBGene00004405	rop-1	79	51.190	ENSCCAG00000027978	TROVE2	97	51.190	Cebus_capucinus
WBGene00004405	rop-1	91	36.457	ENSCATG00000027732	TROVE2	98	36.457	Cercocebus_atys
WBGene00004405	rop-1	91	36.968	ENSCLAG00000016391	TROVE2	98	36.968	Chinchilla_lanigera
WBGene00004405	rop-1	91	36.627	ENSCSAG00000013402	TROVE2	98	36.627	Chlorocebus_sabaeus
WBGene00004405	rop-1	73	42.164	ENSCHOG00000009571	TROVE2	83	42.164	Choloepus_hoffmanni
WBGene00004405	rop-1	91	37.479	ENSCPBG00000010558	TROVE2	98	36.968	Chrysemys_picta_bellii
WBGene00004405	rop-1	91	36.457	ENSCANG00000041293	TROVE2	98	36.457	Colobus_angolensis_palliatus
WBGene00004405	rop-1	91	36.116	ENSCGRG00001016925	Trove2	98	35.945	Cricetulus_griseus_chok1gshd
WBGene00004405	rop-1	91	36.116	ENSCGRG00000003396	Trove2	98	35.945	Cricetulus_griseus_crigri
WBGene00004405	rop-1	89	30.277	ENSCVAG00000008160	trove2	96	30.208	Cyprinodon_variegatus
WBGene00004405	rop-1	91	30.847	ENSDARG00000089225	trove2	98	30.847	Danio_rerio
WBGene00004405	rop-1	91	36.286	ENSDNOG00000002157	TROVE2	98	36.116	Dasypus_novemcinctus
WBGene00004405	rop-1	91	36.116	ENSDORG00000006152	Trove2	98	35.775	Dipodomys_ordii
WBGene00004405	rop-1	52	39.941	ENSETEG00000018261	TROVE2	93	40.683	Echinops_telfairi
WBGene00004405	rop-1	91	35.775	ENSEASG00005003388	TROVE2	98	35.775	Equus_asinus_asinus
WBGene00004405	rop-1	91	35.775	ENSECAG00000018653	TROVE2	98	35.775	Equus_caballus
WBGene00004405	rop-1	91	37.479	ENSEEUG00000014190	TROVE2	98	37.308	Erinaceus_europaeus
WBGene00004405	rop-1	90	30.068	ENSELUG00000004473	trove2	96	30.104	Esox_lucius
WBGene00004405	rop-1	91	36.116	ENSFCAG00000010161	TROVE2	98	36.116	Felis_catus
WBGene00004405	rop-1	90	34.536	ENSFALG00000002913	TROVE2	97	34.536	Ficedula_albicollis
WBGene00004405	rop-1	91	36.797	ENSFDAG00000015923	TROVE2	98	36.457	Fukomys_damarensis
WBGene00004405	rop-1	91	34.014	ENSGALG00000002504	TROVE2	98	34.014	Gallus_gallus
WBGene00004405	rop-1	88	30.526	ENSGAFG00000011806	trove2	93	30.783	Gambusia_affinis
WBGene00004405	rop-1	91	37.479	ENSGAGG00000017742	TROVE2	98	36.968	Gopherus_agassizii
WBGene00004405	rop-1	91	36.457	ENSGGOG00000034815	TROVE2	98	36.457	Gorilla_gorilla
WBGene00004405	rop-1	91	36.797	ENSHGLG00000003152	TROVE2	98	36.457	Heterocephalus_glaber_female
WBGene00004405	rop-1	91	36.797	ENSHGLG00100010586	TROVE2	98	36.457	Heterocephalus_glaber_male
WBGene00004405	rop-1	91	32.709	ENSSTOG00000012307	TROVE2	98	32.709	Ictidomys_tridecemlineatus
WBGene00004405	rop-1	91	35.775	ENSJJAG00000019489	Trove2	98	35.775	Jaculus_jaculus
WBGene00004405	rop-1	90	30.069	ENSKMAG00000004951	trove2	97	30.000	Kryptolebias_marmoratus
WBGene00004405	rop-1	89	42.035	ENSLACG00000007822	TROVE2	97	36.457	Latimeria_chalumnae
WBGene00004405	rop-1	91	36.581	ENSLOCG00000007384	trove2	97	36.581	Lepisosteus_oculatus
WBGene00004405	rop-1	91	36.457	ENSLAFG00000014808	TROVE2	98	36.457	Loxodonta_africana
WBGene00004405	rop-1	91	36.627	ENSMFAG00000016020	TROVE2	98	36.627	Macaca_fascicularis
WBGene00004405	rop-1	90	36.960	ENSMMUG00000022643	TROVE2	98	41.313	Macaca_mulatta
WBGene00004405	rop-1	91	36.627	ENSMNEG00000039348	TROVE2	98	36.627	Macaca_nemestrina
WBGene00004405	rop-1	91	36.457	ENSMLEG00000040042	TROVE2	98	36.457	Mandrillus_leucophaeus
WBGene00004405	rop-1	93	34.167	ENSMGAG00000005429	TROVE2	99	34.167	Meleagris_gallopavo
WBGene00004405	rop-1	92	36.256	ENSMAUG00000008125	Trove2	99	36.088	Mesocricetus_auratus
WBGene00004405	rop-1	91	36.797	ENSMICG00000011506	TROVE2	98	36.627	Microcebus_murinus
WBGene00004405	rop-1	91	35.775	ENSMOCG00000021175	Trove2	98	35.605	Microtus_ochrogaster
WBGene00004405	rop-1	89	30.293	ENSMMOG00000017049	trove2	96	30.052	Mola_mola
WBGene00004405	rop-1	91	36.116	ENSMODG00000012203	TROVE2	98	35.945	Monodelphis_domestica
WBGene00004405	rop-1	88	30.594	ENSMALG00000007367	trove2	94	30.351	Monopterus_albus
WBGene00004405	rop-1	91	36.286	MGP_CAROLIEiJ_G0014676	Trove2	98	36.286	Mus_caroli
WBGene00004405	rop-1	91	35.775	ENSMUSG00000018199	Trove2	98	35.775	Mus_musculus
WBGene00004405	rop-1	91	35.945	MGP_PahariEiJ_G0027912	Trove2	89	35.945	Mus_pahari
WBGene00004405	rop-1	91	35.775	MGP_SPRETEiJ_G0015483	Trove2	98	35.775	Mus_spretus
WBGene00004405	rop-1	91	36.968	ENSMPUG00000004631	TROVE2	98	36.968	Mustela_putorius_furo
WBGene00004405	rop-1	90	36.097	ENSMLUG00000001442	TROVE2	97	36.097	Myotis_lucifugus
WBGene00004405	rop-1	91	36.116	ENSNGAG00000015898	Trove2	98	36.116	Nannospalax_galili
WBGene00004405	rop-1	91	36.457	ENSNLEG00000018048	TROVE2	98	36.457	Nomascus_leucogenys
WBGene00004405	rop-1	67	31.395	ENSOPRG00000017247	TROVE2	99	31.395	Ochotona_princeps
WBGene00004405	rop-1	91	36.627	ENSODEG00000010468	TROVE2	98	36.627	Octodon_degus
WBGene00004405	rop-1	91	36.627	ENSOANG00000002961	TROVE2	98	36.457	Ornithorhynchus_anatinus
WBGene00004405	rop-1	91	35.264	ENSOCUG00000012814	TROVE2	98	35.264	Oryctolagus_cuniculus
WBGene00004405	rop-1	90	36.960	ENSOGAG00000032047	TROVE2	97	36.788	Otolemur_garnettii
WBGene00004405	rop-1	92	36.074	ENSOARG00000009462	TROVE2	96	36.074	Ovis_aries
WBGene00004405	rop-1	91	36.457	ENSPPAG00000043846	TROVE2	98	36.457	Pan_paniscus
WBGene00004405	rop-1	91	36.286	ENSPPRG00000017233	TROVE2	98	36.286	Panthera_pardus
WBGene00004405	rop-1	91	36.286	ENSPTIG00000015535	TROVE2	98	36.286	Panthera_tigris_altaica
WBGene00004405	rop-1	91	36.457	ENSPTRG00000001794	TROVE2	98	36.457	Pan_troglodytes
WBGene00004405	rop-1	91	36.286	ENSPANG00000000341	TROVE2	98	36.286	Papio_anubis
WBGene00004405	rop-1	89	31.304	ENSPKIG00000018217	trove2	99	31.304	Paramormyrops_kingsleyae
WBGene00004405	rop-1	91	37.649	ENSPSIG00000009877	TROVE2	98	37.649	Pelodiscus_sinensis
WBGene00004405	rop-1	91	36.286	ENSPEMG00000001419	Trove2	98	36.116	Peromyscus_maniculatus_bairdii
WBGene00004405	rop-1	91	36.286	ENSPCIG00000028632	TROVE2	98	35.775	Phascolarctos_cinereus
WBGene00004405	rop-1	87	30.551	ENSPFOG00000006974	trove2	93	30.427	Poecilia_formosa
WBGene00004405	rop-1	87	30.195	ENSPLAG00000009027	trove2	93	30.071	Poecilia_latipinna
WBGene00004405	rop-1	87	30.728	ENSPMEG00000015081	trove2	92	30.605	Poecilia_mexicana
WBGene00004405	rop-1	87	30.373	ENSPREG00000005674	trove2	93	30.249	Poecilia_reticulata
WBGene00004405	rop-1	91	36.457	ENSPPYG00000000397	TROVE2	98	36.457	Pongo_abelii
WBGene00004405	rop-1	91	35.775	ENSPCAG00000003959	TROVE2	98	35.775	Procavia_capensis
WBGene00004405	rop-1	91	36.457	ENSPCOG00000015951	-	98	36.457	Propithecus_coquereli
WBGene00004405	rop-1	84	34.196	ENSPVAG00000001182	TROVE2	99	34.196	Pteropus_vampyrus
WBGene00004405	rop-1	89	31.716	ENSPNAG00000024223	trove2	95	31.716	Pygocentrus_nattereri
WBGene00004405	rop-1	91	35.945	ENSRNOG00000003434	Trove2	98	36.116	Rattus_norvegicus
WBGene00004405	rop-1	91	36.457	ENSRBIG00000030073	TROVE2	98	36.457	Rhinopithecus_bieti
WBGene00004405	rop-1	91	36.457	ENSRROG00000034428	TROVE2	98	36.457	Rhinopithecus_roxellana
WBGene00004405	rop-1	91	36.286	ENSSBOG00000024070	TROVE2	98	36.286	Saimiri_boliviensis_boliviensis
WBGene00004405	rop-1	91	36.286	ENSSHAG00000013205	TROVE2	98	35.434	Sarcophilus_harrisii
WBGene00004405	rop-1	90	33.904	ENSSFOG00015011990	trove2	96	33.849	Scleropages_formosus
WBGene00004405	rop-1	88	31.119	ENSSDUG00000009083	trove2	94	30.877	Seriola_dumerili
WBGene00004405	rop-1	88	30.877	ENSSLDG00000019857	trove2	94	30.634	Seriola_lalandi_dorsalis
WBGene00004405	rop-1	91	37.138	ENSSARG00000009347	TROVE2	98	37.138	Sorex_araneus
WBGene00004405	rop-1	91	35.434	ENSSPUG00000014304	TROVE2	98	41.699	Sphenodon_punctatus
WBGene00004405	rop-1	89	30.435	ENSSPAG00000003171	trove2	96	30.435	Stegastes_partitus
WBGene00004405	rop-1	91	37.138	ENSSSCG00000032055	TROVE2	98	37.138	Sus_scrofa
WBGene00004405	rop-1	88	34.568	ENSTGUG00000004126	TROVE2	99	34.744	Taeniopygia_guttata
WBGene00004405	rop-1	58	40.217	ENSTBEG00000006806	TROVE2	76	40.217	Tupaia_belangeri
WBGene00004405	rop-1	92	35.980	ENSTTRG00000009291	TROVE2	98	36.116	Tursiops_truncatus
WBGene00004405	rop-1	91	36.457	ENSUAMG00000013365	TROVE2	98	36.457	Ursus_americanus
WBGene00004405	rop-1	91	36.797	ENSUMAG00000020464	TROVE2	98	36.797	Ursus_maritimus
WBGene00004405	rop-1	71	34.783	ENSVPAG00000010303	TROVE2	75	34.783	Vicugna_pacos
WBGene00004405	rop-1	88	36.684	ENSVVUG00000013405	TROVE2	71	36.508	Vulpes_vulpes
WBGene00004405	rop-1	91	36.627	ENSXETG00000017224	trove2	98	36.627	Xenopus_tropicalis
WBGene00004405	rop-1	88	30.000	ENSXMAG00000004825	trove2	93	30.249	Xiphophorus_maculatus