EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00004409 (Gene tree)
Gene ID: -
Gene Symbol: rla-1
Alias: rpa-1
Full Name: 60S acidic ribosomal protein P1
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Minus strand
Length: 502 bases
Position: chrI:2069086-2069587
Accession: P91913
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y37E3	Ribosomal_60s	PF00428.19	1.9e-28	1	1
Y37E3	Ribosomal_60s	PF00428.19	1.9e-28	1	1
Y37E3	Ribosomal_60s	PF00428.19	1.9e-28	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y37E3.7.1	-	451	NM_170818	Y37E3.7.1	111 (aa)	NP_740801	P91913
Y37E3.7.3	-	441	NM_170818	Y37E3.7.3	111 (aa)	NP_740801	P91913
Y37E3.7.2	-	439	NM_170818	Y37E3.7.2	111 (aa)	NP_740801	P91913

Gene Model

Click here to download WBGene00004409's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00004409's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00004409	rla-1	98	59.633	ENSCSAVG00000007412	-	99	59.633	Ciona_savignyi
WBGene00004409	rla-1	100	66.071	FBgn0002593	RpLP1	100	66.071	Drosophila_melanogaster
WBGene00004409	rla-1	100	54.867	ENSOMEG00000012182	-	100	54.867	Oryzias_melastigma
WBGene00004409	rla-1	95	49.057	YDL081C	RPP1A	99	50.000	Saccharomyces_cerevisiae