EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00004411 (Gene tree)
Gene ID: -
Gene Symbol: rpc-1
Alias: -
Full Name: DNA-directed RNA polymerase subunit
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Minus strand
Length: 5614 bases
Position: chrIV:7160135-7165748
Accession: Q18566
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
C42D4	RNA_pol_Rpb1_5	PF04998.17	1.3e-82	1	1
C42D4	RNA_pol_Rpb1_4	PF05000.17	2.9e-31	1	1
C42D4	RNA_pol_Rpb1_2	PF00623.20	4.8e-76	1	1
C42D4	RNA_pol_Rpb1_3	PF04983.18	3.3e-37	1	1
C42D4	RNA_pol_Rpb1_1	PF04997.12	3.5e-91	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
C42D4.8	-	4387	NM_068726	C42D4.8	1400 (aa)	NP_501127	Q18566

Gene Model

Click here to download WBGene00004411's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00004411's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00004411	rpc-1	80	30.448	WBGene00012999	rpoa-1	77	33.333
WBGene00004411	rpc-1	87	37.892	WBGene00000123	ama-1	68	37.892

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00004411	rpc-1	99	56.868	ENSG00000148606	POLR3A	94	63.492	Homo_sapiens
WBGene00004411	rpc-1	60	56.140	ENSAPOG00000022727	polr3a	97	56.140	Acanthochromis_polyacanthus
WBGene00004411	rpc-1	99	56.605	ENSAMEG00000017801	POLR3A	99	56.605	Ailuropoda_melanoleuca
WBGene00004411	rpc-1	94	56.335	ENSACIG00000024504	polr3a	97	56.335	Amphilophus_citrinellus
WBGene00004411	rpc-1	99	55.348	ENSAOCG00000003949	-	98	55.348	Amphiprion_ocellaris
WBGene00004411	rpc-1	99	57.071	ENSAOCG00000002071	polr3a	98	57.071	Amphiprion_ocellaris
WBGene00004411	rpc-1	99	57.071	ENSAPEG00000013351	polr3a	98	57.310	Amphiprion_percula
WBGene00004411	rpc-1	99	57.061	ENSAPEG00000001966	-	98	57.061	Amphiprion_percula
WBGene00004411	rpc-1	99	57.348	ENSATEG00000023277	polr3a	98	57.348	Anabas_testudineus
WBGene00004411	rpc-1	98	57.536	ENSAPLG00000015878	POLR3A	98	57.536	Anas_platyrhynchos
WBGene00004411	rpc-1	94	55.907	ENSACAG00000007985	POLR3A	99	55.907	Anolis_carolinensis
WBGene00004411	rpc-1	99	55.308	ENSANAG00000028922	POLR3A	93	60.526	Aotus_nancymaae
WBGene00004411	rpc-1	99	56.908	ENSACLG00000005914	polr3a	99	56.763	Astatotilapia_calliptera
WBGene00004411	rpc-1	99	53.485	ENSAMXG00000018852	polr3a	99	53.485	Astyanax_mexicanus
WBGene00004411	rpc-1	99	57.011	ENSBTAG00000013259	POLR3A	99	57.011	Bos_taurus
WBGene00004411	rpc-1	99	57.071	ENSCJAG00000001015	POLR3A	98	57.071	Callithrix_jacchus
WBGene00004411	rpc-1	99	56.726	ENSCAFG00000015546	POLR3A	99	56.726	Canis_familiaris
WBGene00004411	rpc-1	99	56.726	ENSCAFG00020014711	POLR3A	99	56.726	Canis_lupus_dingo
WBGene00004411	rpc-1	99	56.655	ENSCHIG00000000352	POLR3A	99	56.655	Capra_hircus
WBGene00004411	rpc-1	99	56.655	ENSTSYG00000006671	POLR3A	99	56.655	Carlito_syrichta
WBGene00004411	rpc-1	97	57.456	ENSCAPG00000016031	POLR3A	98	57.456	Cavia_aperea
WBGene00004411	rpc-1	99	57.143	ENSCPOG00000022387	POLR3A	98	57.143	Cavia_porcellus
WBGene00004411	rpc-1	99	56.726	ENSCCAG00000032995	POLR3A	99	56.726	Cebus_capucinus
WBGene00004411	rpc-1	99	57.286	ENSCATG00000035842	POLR3A	98	57.286	Cercocebus_atys
WBGene00004411	rpc-1	99	57.011	ENSCLAG00000009629	POLR3A	99	57.011	Chinchilla_lanigera
WBGene00004411	rpc-1	99	57.215	ENSCSAG00000009292	POLR3A	98	57.215	Chlorocebus_sabaeus
WBGene00004411	rpc-1	80	54.140	ENSCHOG00000008368	POLR3A	93	54.140	Choloepus_hoffmanni
WBGene00004411	rpc-1	99	57.183	ENSCPBG00000002079	POLR3A	99	57.183	Chrysemys_picta_bellii
WBGene00004411	rpc-1	99	53.145	ENSCSAVG00000009925	-	99	53.145	Ciona_savignyi
WBGene00004411	rpc-1	85	56.697	ENSCANG00000041071	POLR3A	94	60.526	Colobus_angolensis_palliatus
WBGene00004411	rpc-1	77	59.936	ENSCGRG00001015599	-	92	59.936	Cricetulus_griseus_chok1gshd
WBGene00004411	rpc-1	81	59.153	ENSCGRG00000001019	Polr3a	93	59.153	Cricetulus_griseus_crigri
WBGene00004411	rpc-1	99	56.228	ENSCSEG00000016653	polr3a	99	56.228	Cynoglossus_semilaevis
WBGene00004411	rpc-1	99	57.071	ENSCVAG00000023049	polr3a	98	57.071	Cyprinodon_variegatus
WBGene00004411	rpc-1	99	56.590	ENSDARG00000102569	polr3a	99	56.590	Danio_rerio
WBGene00004411	rpc-1	99	57.071	ENSDNOG00000010194	POLR3A	98	57.071	Dasypus_novemcinctus
WBGene00004411	rpc-1	99	57.286	ENSDORG00000000184	Polr3a	98	57.286	Dipodomys_ordii
WBGene00004411	rpc-1	99	51.443	FBgn0030687	CG17209	99	51.443	Drosophila_melanogaster
WBGene00004411	rpc-1	81	72.000	ENSETEG00000007477	POLR3A	82	72.000	Echinops_telfairi
WBGene00004411	rpc-1	58	57.913	ENSEBUG00000013761	polr3a	98	57.913	Eptatretus_burgeri
WBGene00004411	rpc-1	99	56.868	ENSEASG00005023053	POLR3A	99	56.868	Equus_asinus_asinus
WBGene00004411	rpc-1	97	56.996	ENSECAG00000019416	POLR3A	99	57.749	Equus_caballus
WBGene00004411	rpc-1	97	54.258	ENSEEUG00000001774	POLR3A	99	54.258	Erinaceus_europaeus
WBGene00004411	rpc-1	99	55.422	ENSELUG00000014016	polr3a	99	55.422	Esox_lucius
WBGene00004411	rpc-1	99	56.868	ENSFCAG00000000843	POLR3A	99	56.868	Felis_catus
WBGene00004411	rpc-1	99	57.112	ENSFALG00000006913	POLR3A	99	57.112	Ficedula_albicollis
WBGene00004411	rpc-1	99	57.215	ENSFDAG00000007813	POLR3A	98	57.215	Fukomys_damarensis
WBGene00004411	rpc-1	99	53.123	ENSFHEG00000011922	polr3a	98	53.123	Fundulus_heteroclitus
WBGene00004411	rpc-1	99	56.375	ENSGMOG00000000291	polr3a	98	56.375	Gadus_morhua
WBGene00004411	rpc-1	99	57.224	ENSGALG00000004947	POLR3A	99	57.224	Gallus_gallus
WBGene00004411	rpc-1	99	56.784	ENSGAFG00000005112	polr3a	98	56.784	Gambusia_affinis
WBGene00004411	rpc-1	99	56.693	ENSGACG00000002304	polr3a	98	56.693	Gasterosteus_aculeatus
WBGene00004411	rpc-1	95	57.558	ENSGAGG00000010386	POLR3A	98	57.558	Gopherus_agassizii
WBGene00004411	rpc-1	98	56.594	ENSGGOG00000027729	POLR3A	99	60.220	Gorilla_gorilla
WBGene00004411	rpc-1	99	56.908	ENSHBUG00000018098	polr3a	98	56.908	Haplochromis_burtoni
WBGene00004411	rpc-1	99	57.082	ENSHGLG00000017899	POLR3A	99	57.082	Heterocephalus_glaber_female
WBGene00004411	rpc-1	99	57.082	ENSHGLG00100008483	POLR3A	99	57.082	Heterocephalus_glaber_male
WBGene00004411	rpc-1	99	56.512	ENSHCOG00000001075	polr3a	99	56.512	Hippocampus_comes
WBGene00004411	rpc-1	99	57.092	ENSSTOG00000012983	POLR3A	98	57.092	Ictidomys_tridecemlineatus
WBGene00004411	rpc-1	99	56.537	ENSKMAG00000015290	polr3a	98	56.681	Kryptolebias_marmoratus
WBGene00004411	rpc-1	99	56.017	ENSLBEG00000017214	polr3a	98	56.017	Labrus_bergylta
WBGene00004411	rpc-1	97	55.419	ENSLACG00000018557	POLR3A	99	55.419	Latimeria_chalumnae
WBGene00004411	rpc-1	99	56.423	ENSLOCG00000004942	polr3a	99	56.423	Lepisosteus_oculatus
WBGene00004411	rpc-1	99	56.232	ENSLAFG00000016719	POLR3A	99	56.232	Loxodonta_africana
WBGene00004411	rpc-1	99	57.215	ENSMFAG00000032218	POLR3A	98	57.215	Macaca_fascicularis
WBGene00004411	rpc-1	99	57.215	ENSMMUG00000005514	POLR3A	98	57.215	Macaca_mulatta
WBGene00004411	rpc-1	99	54.282	ENSMNEG00000035163	POLR3A	98	58.056	Macaca_nemestrina
WBGene00004411	rpc-1	99	54.337	ENSMLEG00000030014	POLR3A	94	60.526	Mandrillus_leucophaeus
WBGene00004411	rpc-1	99	56.640	ENSMAMG00000017497	polr3a	98	56.640	Mastacembelus_armatus
WBGene00004411	rpc-1	99	56.908	ENSMZEG00005000576	polr3a	98	56.908	Maylandia_zebra
WBGene00004411	rpc-1	99	46.203	ENSMGAG00000005713	-	99	46.203	Meleagris_gallopavo
WBGene00004411	rpc-1	99	55.374	ENSMAUG00000016247	Polr3a	99	55.374	Mesocricetus_auratus
WBGene00004411	rpc-1	99	56.868	ENSMICG00000005937	POLR3A	99	60.535	Microcebus_murinus
WBGene00004411	rpc-1	99	56.726	ENSMOCG00000012185	Polr3a	99	56.726	Microtus_ochrogaster
WBGene00004411	rpc-1	99	56.897	ENSMMOG00000013822	polr3a	98	56.897	Mola_mola
WBGene00004411	rpc-1	99	57.430	ENSMODG00000001036	POLR3A	98	57.430	Monodelphis_domestica
WBGene00004411	rpc-1	99	57.009	ENSMALG00000001249	polr3a	98	57.009	Monopterus_albus
WBGene00004411	rpc-1	99	56.797	MGP_CAROLIEiJ_G0019016	Polr3a	99	56.797	Mus_caroli
WBGene00004411	rpc-1	99	56.868	ENSMUSG00000025280	Polr3a	99	56.868	Mus_musculus
WBGene00004411	rpc-1	99	56.797	MGP_PahariEiJ_G0030029	Polr3a	99	56.797	Mus_pahari
WBGene00004411	rpc-1	99	55.018	MGP_SPRETEiJ_G0019894	Polr3a	92	70.000	Mus_spretus
WBGene00004411	rpc-1	99	56.655	ENSMPUG00000003790	POLR3A	99	56.655	Mustela_putorius_furo
WBGene00004411	rpc-1	99	56.157	ENSMLUG00000011522	POLR3A	99	56.157	Myotis_lucifugus
WBGene00004411	rpc-1	99	55.954	ENSNGAG00000015863	Polr3a	98	55.954	Nannospalax_galili
WBGene00004411	rpc-1	99	56.407	ENSNBRG00000014262	polr3a	98	56.407	Neolamprologus_brichardi
WBGene00004411	rpc-1	86	56.873	ENSNLEG00000010501	POLR3A	90	56.873	Nomascus_leucogenys
WBGene00004411	rpc-1	86	59.452	ENSMEUG00000012446	POLR3A	88	59.452	Notamacropus_eugenii
WBGene00004411	rpc-1	94	56.757	ENSOPRG00000001880	-	94	56.757	Ochotona_princeps
WBGene00004411	rpc-1	99	56.868	ENSODEG00000015146	POLR3A	99	56.868	Octodon_degus
WBGene00004411	rpc-1	99	56.908	ENSONIG00000016129	polr3a	98	56.908	Oreochromis_niloticus
WBGene00004411	rpc-1	97	57.968	ENSOANG00000007013	POLR3A	98	57.968	Ornithorhynchus_anatinus
WBGene00004411	rpc-1	99	57.143	ENSOCUG00000012450	POLR3A	98	57.143	Oryctolagus_cuniculus
WBGene00004411	rpc-1	99	56.743	ENSORLG00000008958	polr3a	98	56.743	Oryzias_latipes
WBGene00004411	rpc-1	99	55.093	ENSORLG00020007525	polr3a	98	56.433	Oryzias_latipes_hni
WBGene00004411	rpc-1	99	56.743	ENSORLG00015006633	polr3a	98	56.743	Oryzias_latipes_hsok
WBGene00004411	rpc-1	99	56.322	ENSOMEG00000012865	polr3a	98	56.322	Oryzias_melastigma
WBGene00004411	rpc-1	99	57.030	ENSOGAG00000010995	POLR3A	98	57.030	Otolemur_garnettii
WBGene00004411	rpc-1	99	56.930	ENSOARG00000009656	POLR3A	99	56.930	Ovis_aries
WBGene00004411	rpc-1	99	56.868	ENSPPRG00000002128	POLR3A	99	56.868	Panthera_pardus
WBGene00004411	rpc-1	99	56.868	ENSPTIG00000020916	POLR3A	99	56.868	Panthera_tigris_altaica
WBGene00004411	rpc-1	99	56.868	ENSPTRG00000002664	POLR3A	99	56.868	Pan_troglodytes
WBGene00004411	rpc-1	99	57.215	ENSPANG00000022508	POLR3A	98	57.215	Papio_anubis
WBGene00004411	rpc-1	99	56.999	ENSPKIG00000008140	polr3a	98	56.999	Paramormyrops_kingsleyae
WBGene00004411	rpc-1	98	57.277	ENSPSIG00000002092	POLR3A	99	57.277	Pelodiscus_sinensis
WBGene00004411	rpc-1	99	56.868	ENSPEMG00000006768	Polr3a	99	56.868	Peromyscus_maniculatus_bairdii
WBGene00004411	rpc-1	99	57.502	ENSPCIG00000015842	POLR3A	98	57.502	Phascolarctos_cinereus
WBGene00004411	rpc-1	53	59.140	ENSPFOG00000006458	polr3a	97	59.140	Poecilia_formosa
WBGene00004411	rpc-1	99	56.846	ENSPLAG00000000997	polr3a	99	56.846	Poecilia_latipinna
WBGene00004411	rpc-1	99	56.846	ENSPMEG00000006821	polr3a	99	56.846	Poecilia_mexicana
WBGene00004411	rpc-1	99	56.999	ENSPREG00000002385	polr3a	98	56.999	Poecilia_reticulata
WBGene00004411	rpc-1	91	58.095	ENSPPYG00000002305	POLR3A	98	58.095	Pongo_abelii
WBGene00004411	rpc-1	80	55.921	ENSPCAG00000005690	POLR3A	82	55.921	Procavia_capensis
WBGene00004411	rpc-1	99	56.797	ENSPCOG00000028311	POLR3A	99	56.797	Propithecus_coquereli
WBGene00004411	rpc-1	99	56.228	ENSPVAG00000015553	POLR3A	99	56.228	Pteropus_vampyrus
WBGene00004411	rpc-1	99	56.908	ENSPNYG00000020987	polr3a	98	56.908	Pundamilia_nyererei
WBGene00004411	rpc-1	99	52.912	ENSPNAG00000006629	polr3a	99	52.912	Pygocentrus_nattereri
WBGene00004411	rpc-1	99	56.615	ENSRNOG00000010008	Polr3a	99	56.615	Rattus_norvegicus
WBGene00004411	rpc-1	99	54.591	ENSRBIG00000034967	POLR3A	94	60.526	Rhinopithecus_bieti
WBGene00004411	rpc-1	99	57.143	ENSRROG00000025527	POLR3A	98	57.143	Rhinopithecus_roxellana
WBGene00004411	rpc-1	98	46.838	YOR116C	RPO31	97	46.908	Saccharomyces_cerevisiae
WBGene00004411	rpc-1	99	57.143	ENSSBOG00000022199	POLR3A	98	57.143	Saimiri_boliviensis_boliviensis
WBGene00004411	rpc-1	99	57.367	ENSSHAG00000007588	POLR3A	93	57.367	Sarcophilus_harrisii
WBGene00004411	rpc-1	99	56.157	ENSSFOG00015014357	polr3a	99	56.157	Scleropages_formosus
WBGene00004411	rpc-1	99	56.712	ENSSMAG00000001780	polr3a	98	56.712	Scophthalmus_maximus
WBGene00004411	rpc-1	99	56.999	ENSSDUG00000019840	polr3a	98	56.999	Seriola_dumerili
WBGene00004411	rpc-1	99	56.927	ENSSLDG00000023908	polr3a	98	56.927	Seriola_lalandi_dorsalis
WBGene00004411	rpc-1	68	64.688	ENSSARG00000009916	POLR3A	87	64.688	Sorex_araneus
WBGene00004411	rpc-1	99	56.828	ENSSPUG00000013209	POLR3A	99	56.828	Sphenodon_punctatus
WBGene00004411	rpc-1	99	57.143	ENSSPAG00000017712	polr3a	98	57.143	Stegastes_partitus
WBGene00004411	rpc-1	99	56.797	ENSSSCG00000010327	POLR3A	99	61.905	Sus_scrofa
WBGene00004411	rpc-1	99	57.153	ENSTGUG00000006423	-	99	57.153	Taeniopygia_guttata
WBGene00004411	rpc-1	99	56.815	ENSTRUG00000013488	polr3a	98	56.815	Takifugu_rubripes
WBGene00004411	rpc-1	99	56.846	ENSTNIG00000013151	polr3a	98	56.846	Tetraodon_nigroviridis
WBGene00004411	rpc-1	69	73.118	ENSTBEG00000015288	POLR3A	72	73.118	Tupaia_belangeri
WBGene00004411	rpc-1	99	53.167	ENSTTRG00000007817	POLR3A	99	53.167	Tursiops_truncatus
WBGene00004411	rpc-1	99	55.224	ENSUAMG00000011283	POLR3A	99	55.224	Ursus_americanus
WBGene00004411	rpc-1	99	56.726	ENSUMAG00000013913	POLR3A	99	56.726	Ursus_maritimus
WBGene00004411	rpc-1	98	53.102	ENSVPAG00000003285	POLR3A	99	53.102	Vicugna_pacos
WBGene00004411	rpc-1	99	56.726	ENSVVUG00000025523	POLR3A	99	56.726	Vulpes_vulpes
WBGene00004411	rpc-1	86	56.768	ENSXETG00000018101	polr3a	99	56.768	Xenopus_tropicalis
WBGene00004411	rpc-1	99	56.927	ENSXMAG00000015213	polr3a	99	56.541	Xiphophorus_maculatus