EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00004412 (Gene tree)
Gene ID: -
Gene Symbol: rpl-1
Alias: -
Full Name: 60S ribosomal protein L10a
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Minus strand
Length: 930 bases
Position: chrI:2875395-2876324
Accession: Q9N4I4
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y71F9AL	Ribosomal_L1	PF00687.21	9.8e-43	1	1
Y71F9AL	Ribosomal_L1	PF00687.21	9.8e-43	1	1
Y71F9AL	Ribosomal_L1	PF00687.21	1.4e-33	1	1
Y71F9AL	Ribosomal_L1	PF00687.21	1.4e-33	1	1
Y71F9AL	Ribosomal_L1	PF00687.21	1.4e-33	1	1
Y71F9AL	Ribosomal_L1	PF00687.21	1.4e-33	1	1
Y71F9AL	Ribosomal_L1	PF00687.21	1.4e-33	1	1
Y71F9AL	Ribosomal_L1	PF00687.21	1.4e-33	1	1
Y71F9AL	Ribosomal_L1	PF00687.21	1.4e-33	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y71F9AL.13c	-	501	NR_002353	-	- (aa)	-	-
Y71F9AL.13b.2	-	818	-	Y71F9AL.13b.2	155 (aa)	-	Q95Y46
Y71F9AL.13b.3	-	694	-	Y71F9AL.13b.3	155 (aa)	-	Q95Y46
Y71F9AL.13b.1	-	692	-	Y71F9AL.13b.1	155 (aa)	-	Q95Y46
Y71F9AL.13b.6	-	656	NM_058661	Y71F9AL.13b.6	155 (aa)	NP_491062	Q95Y46
Y71F9AL.13b.7	-	532	NM_058661	Y71F9AL.13b.7	155 (aa)	NP_491062	Q95Y46
Y71F9AL.13b.4	-	810	-	Y71F9AL.13b.4	155 (aa)	-	Q95Y46
Y71F9AL.13b.5	-	667	NM_058661	Y71F9AL.13b.5	155 (aa)	NP_491062	Q95Y46
Y71F9AL.13d	-	513	NR_002354	-	- (aa)	-	-
Y71F9AL.13a.1	-	706	NM_058660	Y71F9AL.13a.1	216 (aa)	NP_491061	Q9N4I4
Y71F9AL.13a.2	-	690	NM_058660	Y71F9AL.13a.2	216 (aa)	NP_491061	Q9N4I4

Gene Model

Click here to download WBGene00004412's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00004412's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00004412	rpl-1	100	60.000	FBgn0038281	RpL10Aa	99	56.481	Drosophila_melanogaster
WBGene00004412	rpl-1	100	60.000	YPL220W	RPL1A	100	59.908	Saccharomyces_cerevisiae
WBGene00004412	rpl-1	100	60.000	YGL135W	RPL1B	100	59.908	Saccharomyces_cerevisiae
WBGene00004412	rpl-1	100	65.806	ENSSLDG00000000813	-	100	65.741	Seriola_lalandi_dorsalis