EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
WBGene00004428 (Gene tree)
Gene ID
-
Gene Symbol
rpl-16
Alias
-
Full Name
60S ribosomal protein L13a
Gene Type
protein_coding
Species
Caenorhabditis_elegans
Status
confidence
Strand
Minus strand
Length
884 bases
Position
chrIII:3502841-3503724
Accession
Q27389
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
M01F1Ribosomal_L13PF00572.182.1e-1011
M01F1Ribosomal_L13PF00572.182.1e-1011
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
26595419Conserved mRNA binding proteomes in eukaryotic organismsmRBPome & elegans2015 Nov 23Matia-Gonzalez AMDOI: 10.1038/nsmb.3128
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
M01F1.2.1-785NM_065320M01F1.2.1202 (aa)NP_497721Q27389
M01F1.2.2-665NM_065320M01F1.2.2202 (aa)NP_497721Q27389
Gene Model
Click here to download WBGene00004428's gene model file
Protein-Protein Interaction (PPI)

Clik here to download WBGene00004428's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
WBGene00004428rpl-169754.082ENSG00000142541RPL13A9754.082Homo_sapiens
WBGene00004428rpl-169754.315ENSAPOG00000014084rpl13a9654.315Acanthochromis_polyacanthus
WBGene00004428rpl-169853.535ENSAMEG00000014027RPL13A9853.535Ailuropoda_melanoleuca
WBGene00004428rpl-169655.385ENSACIG00000004871rpl13a9855.385Amphilophus_citrinellus
WBGene00004428rpl-169753.807ENSAOCG00000002123rpl13a9653.807Amphiprion_ocellaris
WBGene00004428rpl-169753.807ENSAPEG00000018777rpl13a9653.807Amphiprion_percula
WBGene00004428rpl-169754.822ENSATEG00000012828rpl13a9654.822Anabas_testudineus
WBGene00004428rpl-169756.122ENSACAG00000017279RPL13A9756.122Anolis_carolinensis
WBGene00004428rpl-169754.082ENSANAG00000030530RPL13A9754.082Aotus_nancymaae
WBGene00004428rpl-166849.640ENSANAG00000013769-9849.640Aotus_nancymaae
WBGene00004428rpl-168851.955ENSANAG00000021423-9351.955Aotus_nancymaae
WBGene00004428rpl-169548.454ENSANAG00000020868-9548.454Aotus_nancymaae
WBGene00004428rpl-166642.857ENSANAG00000037443-9942.857Aotus_nancymaae
WBGene00004428rpl-169754.822ENSACLG00000016552rpl13a9654.822Astatotilapia_calliptera
WBGene00004428rpl-169753.299ENSAMXG00000033532rpl13a9653.299Astyanax_mexicanus
WBGene00004428rpl-169852.764ENSBTAG00000005296RPL13A9852.764Bos_taurus
WBGene00004428rpl-169653.333ENSCJAG00000040678-9653.333Callithrix_jacchus
WBGene00004428rpl-169754.082ENSCJAG00000000072-9754.082Callithrix_jacchus
WBGene00004428rpl-167055.634ENSCJAG00000008837-8155.634Callithrix_jacchus
WBGene00004428rpl-169752.041ENSCJAG00000046649-9752.041Callithrix_jacchus
WBGene00004428rpl-169535.567ENSCAFG00000003946-9435.567Canis_familiaris
WBGene00004428rpl-169853.535ENSCAFG00000029892RPL13A9853.535Canis_familiaris
WBGene00004428rpl-169853.535ENSCAFG00020024917-9853.535Canis_lupus_dingo
WBGene00004428rpl-169852.764ENSCHIG00000021732-9853.571Capra_hircus
WBGene00004428rpl-169849.246ENSCHIG00000012581-9849.246Capra_hircus
WBGene00004428rpl-168644.828ENSTSYG00000028115-9145.161Carlito_syrichta
WBGene00004428rpl-169853.535ENSTSYG00000008791-9853.535Carlito_syrichta
WBGene00004428rpl-169653.846ENSCAPG00000007267RPL13A10052.381Cavia_aperea
WBGene00004428rpl-169853.030ENSCPOG00000012417RPL13A9853.030Cavia_porcellus
WBGene00004428rpl-166158.400ENSCPOG00000023083-5758.140Cavia_porcellus
WBGene00004428rpl-166657.778ENSCCAG00000029220-9357.778Cebus_capucinus
WBGene00004428rpl-166654.815ENSCCAG00000020555-9754.815Cebus_capucinus
WBGene00004428rpl-169754.082ENSCCAG00000022898RPL13A9754.082Cebus_capucinus
WBGene00004428rpl-169651.031ENSCCAG00000034479-9651.031Cebus_capucinus
WBGene00004428rpl-169754.082ENSCATG00000011576RPL13A9754.082Cercocebus_atys
WBGene00004428rpl-169853.535ENSCLAG00000012323RPL13A9853.535Chinchilla_lanigera
WBGene00004428rpl-169653.333ENSCSAG00000019054-9653.333Chlorocebus_sabaeus
WBGene00004428rpl-169754.592ENSCPBG00000014922RPL13A9154.872Chrysemys_picta_bellii
WBGene00004428rpl-169553.886ENSCING00000014892-9453.886Ciona_intestinalis
WBGene00004428rpl-169555.959ENSCSAVG00000000666-9455.959Ciona_savignyi
WBGene00004428rpl-167952.469ENSCANG00000018732-9852.469Colobus_angolensis_palliatus
WBGene00004428rpl-169753.061ENSCANG00000000304-9753.061Colobus_angolensis_palliatus
WBGene00004428rpl-169754.082ENSCANG00000040885-9754.082Colobus_angolensis_palliatus
WBGene00004428rpl-169853.030ENSCGRG00001018651-9853.030Cricetulus_griseus_chok1gshd
WBGene00004428rpl-169853.030ENSCGRG00000005890-9853.030Cricetulus_griseus_crigri
WBGene00004428rpl-169647.150ENSCSEG00000002640rpl13a9447.150Cynoglossus_semilaevis
WBGene00004428rpl-169746.193ENSCVAG00000011043rpl13a9646.193Cyprinodon_variegatus
WBGene00004428rpl-169754.822ENSDARG00000044093rpl13a9654.822Danio_rerio
WBGene00004428rpl-169853.535ENSDNOG00000035370-9853.535Dasypus_novemcinctus
WBGene00004428rpl-169853.030ENSDORG00000012194-9853.030Dipodomys_ordii
WBGene00004428rpl-169953.234FBgn0037351RpL13A9853.234Drosophila_melanogaster
WBGene00004428rpl-169850.754ENSETEG00000005732-9850.754Echinops_telfairi
WBGene00004428rpl-169843.939ENSETEG00000017076-9843.939Echinops_telfairi
WBGene00004428rpl-169756.633ENSEBUG00000007234rpl13a9857.838Eptatretus_burgeri
WBGene00004428rpl-169654.359ENSEASG00005005007RPL13A8454.359Equus_asinus_asinus
WBGene00004428rpl-169853.535ENSECAG00000015832RPL13A9854.359Equus_caballus
WBGene00004428rpl-167351.351ENSEEUG00000014071RPL13A7351.351Erinaceus_europaeus
WBGene00004428rpl-169753.299ENSELUG00000014577rpl13a9653.299Esox_lucius
WBGene00004428rpl-169754.082ENSFCAG00000009194RPL13A9754.082Felis_catus
WBGene00004428rpl-169853.030ENSFDAG00000016892RPL13A9853.030Fukomys_damarensis
WBGene00004428rpl-169754.315ENSFHEG00000004165rpl13a9654.315Fundulus_heteroclitus
WBGene00004428rpl-169853.769ENSGMOG00000010791rpl13a9353.769Gadus_morhua
WBGene00004428rpl-169755.838ENSGAFG00000007578rpl13a9655.838Gambusia_affinis
WBGene00004428rpl-169752.792ENSGACG00000009310rpl13a9852.792Gasterosteus_aculeatus
WBGene00004428rpl-169152.973ENSGAGG00000002437RPL13A7152.973Gopherus_agassizii
WBGene00004428rpl-166557.576ENSGGOG00000039904-7057.576Gorilla_gorilla
WBGene00004428rpl-169754.082ENSGGOG00000002932RPL13A9754.082Gorilla_gorilla
WBGene00004428rpl-169753.061ENSGGOG00000023324-9753.061Gorilla_gorilla
WBGene00004428rpl-166656.296ENSGGOG00000039250-8256.296Gorilla_gorilla
WBGene00004428rpl-169754.822ENSHBUG00000023575rpl13a9654.822Haplochromis_burtoni
WBGene00004428rpl-169853.030ENSHGLG00000010070RPL13A9853.846Heterocephalus_glaber_female
WBGene00004428rpl-169853.030ENSHGLG00100010359RPL13A9853.030Heterocephalus_glaber_male
WBGene00004428rpl-169754.315ENSHCOG00000007902rpl13a9854.359Hippocampus_comes
WBGene00004428rpl-169854.271ENSIPUG00000014098rpl13a9454.271Ictalurus_punctatus
WBGene00004428rpl-169653.846ENSSTOG00000021558RPL13A9853.846Ictidomys_tridecemlineatus
WBGene00004428rpl-169853.030ENSJJAG00000000343-9853.030Jaculus_jaculus
WBGene00004428rpl-169755.330ENSKMAG00000009039rpl13a9655.330Kryptolebias_marmoratus
WBGene00004428rpl-169754.315ENSLBEG00000005434rpl13a9654.315Labrus_bergylta
WBGene00004428rpl-169752.020ENSLACG00000019092RPL13A9552.020Latimeria_chalumnae
WBGene00004428rpl-169754.822ENSLOCG00000004388rpl13a9654.822Lepisosteus_oculatus
WBGene00004428rpl-169853.535ENSLAFG00000016213RPL13A9853.535Loxodonta_africana
WBGene00004428rpl-169749.744ENSMFAG00000003121-9649.744Macaca_fascicularis
WBGene00004428rpl-169754.082ENSMFAG00000001097-9754.082Macaca_fascicularis
WBGene00004428rpl-169650.754ENSMFAG00000002765-9650.754Macaca_fascicularis
WBGene00004428rpl-169754.082ENSMMUG00000007551RPL13A9754.359Macaca_mulatta
WBGene00004428rpl-169650.754ENSMMUG00000009018-9650.754Macaca_mulatta
WBGene00004428rpl-169754.082ENSMNEG00000034977RPL13A9754.082Macaca_nemestrina
WBGene00004428rpl-165661.947ENSMLEG00000038132-9661.947Mandrillus_leucophaeus
WBGene00004428rpl-169754.822ENSMAMG00000007425rpl13a8354.822Mastacembelus_armatus
WBGene00004428rpl-169754.822ENSMZEG00005004952rpl13a9654.822Maylandia_zebra
WBGene00004428rpl-169846.734ENSMAUG00000012558-9846.734Mesocricetus_auratus
WBGene00004428rpl-169750.000ENSMAUG00000020351-9650.000Mesocricetus_auratus
WBGene00004428rpl-169853.535ENSMAUG00000016402-9853.535Mesocricetus_auratus
WBGene00004428rpl-169853.535ENSMICG00000009318-9853.535Microcebus_murinus
WBGene00004428rpl-169046.703ENSMICG00000043457-9446.703Microcebus_murinus
WBGene00004428rpl-169853.030ENSMOCG00000002774-9853.030Microtus_ochrogaster
WBGene00004428rpl-168548.555ENSMOCG00000016427-9048.555Microtus_ochrogaster
WBGene00004428rpl-169854.000ENSMMOG00000010248rpl13a9954.000Mola_mola
WBGene00004428rpl-169754.822ENSMALG00000012804rpl13a9654.822Monopterus_albus
WBGene00004428rpl-169853.535MGP_CAROLIEiJ_G0029698-9853.535Mus_caroli
WBGene00004428rpl-169853.030ENSMUSG00000074129Rpl13a9853.030Mus_musculus
WBGene00004428rpl-169853.535MGP_PahariEiJ_G0012923-9853.535Mus_pahari
WBGene00004428rpl-169851.010MGP_SPRETEiJ_G0017763-9851.010Mus_spretus
WBGene00004428rpl-169853.030MGP_SPRETEiJ_G0030796Rpl13a9853.030Mus_spretus
WBGene00004428rpl-169853.535ENSMPUG00000002604RPL13A9853.535Mustela_putorius_furo
WBGene00004428rpl-169753.299ENSMLUG00000004945RPL13A9753.299Myotis_lucifugus
WBGene00004428rpl-169853.030ENSNGAG00000021984-9853.846Nannospalax_galili
WBGene00004428rpl-169754.822ENSNBRG00000024166rpl13a9654.822Neolamprologus_brichardi
WBGene00004428rpl-169652.062ENSNLEG00000033213-9752.062Nomascus_leucogenys
WBGene00004428rpl-169748.990ENSNLEG00000005211RPL13A9648.990Nomascus_leucogenys
WBGene00004428rpl-169749.490ENSNLEG00000012957-9549.490Nomascus_leucogenys
WBGene00004428rpl-168350.888ENSMEUG00000005199RPL13A9850.888Notamacropus_eugenii
WBGene00004428rpl-169850.505ENSOPRG00000001194RPL13A9850.505Ochotona_princeps
WBGene00004428rpl-169852.525ENSODEG00000020468-9852.525Octodon_degus
WBGene00004428rpl-169853.030ENSODEG00000016831-9853.030Octodon_degus
WBGene00004428rpl-169852.020ENSODEG00000019218-9852.020Octodon_degus
WBGene00004428rpl-169851.515ENSODEG00000020233-9851.515Octodon_degus
WBGene00004428rpl-169754.315ENSONIG00000003560rpl13a9654.315Oreochromis_niloticus
WBGene00004428rpl-169854.545ENSOANG00000000828RPL13A9854.545Ornithorhynchus_anatinus
WBGene00004428rpl-167849.686ENSOCUG00000026592-9949.686Oryctolagus_cuniculus
WBGene00004428rpl-169754.315ENSORLG00000014599rpl13a8654.315Oryzias_latipes
WBGene00004428rpl-169754.315ENSORLG00020013090rpl13a8654.315Oryzias_latipes_hni
WBGene00004428rpl-169954.000ENSORLG00015011634rpl13a9754.000Oryzias_latipes_hsok
WBGene00004428rpl-169754.822ENSOMEG00000010232rpl13a8654.822Oryzias_melastigma
WBGene00004428rpl-169851.759ENSOGAG00000030280-9851.759Otolemur_garnettii
WBGene00004428rpl-169850.000ENSOGAG00000026177-9850.000Otolemur_garnettii
WBGene00004428rpl-169854.040ENSOGAG00000004625-9854.040Otolemur_garnettii
WBGene00004428rpl-169952.475ENSOARG00000013169-9952.475Ovis_aries
WBGene00004428rpl-169642.051ENSOARG00000017798-9642.051Ovis_aries
WBGene00004428rpl-169852.261ENSOARG00000020159-9852.261Ovis_aries
WBGene00004428rpl-169752.551ENSPPAG00000023659-9752.551Pan_paniscus
WBGene00004428rpl-166557.576ENSPPAG00000006023-6957.576Pan_paniscus
WBGene00004428rpl-169750.510ENSPPAG00000019107-9750.510Pan_paniscus
WBGene00004428rpl-169754.082ENSPPAG00000037365RPL13A9754.082Pan_paniscus
WBGene00004428rpl-169754.082ENSPPRG00000011265RPL13A9754.082Panthera_pardus
WBGene00004428rpl-166849.640ENSPTRG00000042978-9849.640Pan_troglodytes
WBGene00004428rpl-169753.571ENSPTRG00000050666-9753.571Pan_troglodytes
WBGene00004428rpl-166459.542ENSPTRG00000052284-9059.542Pan_troglodytes
WBGene00004428rpl-169754.082ENSPTRG00000011298RPL13A9754.082Pan_troglodytes
WBGene00004428rpl-169750.510ENSPTRG00000049426-9750.510Pan_troglodytes
WBGene00004428rpl-169854.040ENSPANG00000012050RPL13A9854.040Papio_anubis
WBGene00004428rpl-169755.330ENSPKIG00000000720rpl13a9655.330Paramormyrops_kingsleyae
WBGene00004428rpl-169755.102ENSPSIG00000018234RPL13A9855.102Pelodiscus_sinensis
WBGene00004428rpl-169754.592ENSPMGG00000010552rpl13a9454.592Periophthalmus_magnuspinnatus
WBGene00004428rpl-169853.030ENSPEMG00000009221-9853.030Peromyscus_maniculatus_bairdii
WBGene00004428rpl-169754.822ENSPMAG00000006362rpl13a9654.822Petromyzon_marinus
WBGene00004428rpl-168345.238ENSPCIG00000014063-8945.238Phascolarctos_cinereus
WBGene00004428rpl-169855.556ENSPCIG00000007340-9855.556Phascolarctos_cinereus
WBGene00004428rpl-169755.330ENSPFOG00000013546rpl13a9655.330Poecilia_formosa
WBGene00004428rpl-169754.822ENSPLAG00000016066rpl13a9654.822Poecilia_latipinna
WBGene00004428rpl-169755.330ENSPMEG00000018384rpl13a9655.330Poecilia_mexicana
WBGene00004428rpl-169754.822ENSPREG00000020079rpl13a9654.822Poecilia_reticulata
WBGene00004428rpl-169754.082ENSPPYG00000006798-9754.082Pongo_abelii
WBGene00004428rpl-169754.082ENSPPYG00000010251-9754.082Pongo_abelii
WBGene00004428rpl-169853.535ENSPCAG00000004086RPL13A9853.535Procavia_capensis
WBGene00004428rpl-169444.503ENSPCOG00000016293-9244.503Propithecus_coquereli
WBGene00004428rpl-169853.535ENSPCOG00000023898RPL13A9854.082Propithecus_coquereli
WBGene00004428rpl-169853.535ENSPVAG00000010958RPL13A9853.535Pteropus_vampyrus
WBGene00004428rpl-169754.822ENSPNYG00000019779rpl13a9654.822Pundamilia_nyererei
WBGene00004428rpl-169753.299ENSPNAG00000026887rpl13a9653.299Pygocentrus_nattereri
WBGene00004428rpl-169853.030ENSRNOG00000062298Rpl13a9853.030Rattus_norvegicus
WBGene00004428rpl-169156.522ENSRBIG00000044737RPL13A9156.522Rhinopithecus_bieti
WBGene00004428rpl-166453.788ENSRROG00000028369-9043.094Rhinopithecus_roxellana
WBGene00004428rpl-169750.510ENSRROG00000036041-9650.510Rhinopithecus_roxellana
WBGene00004428rpl-169754.082ENSRROG00000042976-9754.082Rhinopithecus_roxellana
WBGene00004428rpl-168651.429YNL069CRPL16B10048.000Saccharomyces_cerevisiae
WBGene00004428rpl-169652.308YIL133CRPL16A9752.308Saccharomyces_cerevisiae
WBGene00004428rpl-169754.082ENSSBOG00000028481RPL13A9854.359Saimiri_boliviensis_boliviensis
WBGene00004428rpl-169743.662ENSSBOG00000024635-9743.662Saimiri_boliviensis_boliviensis
WBGene00004428rpl-169754.822ENSSFOG00015001972rpl13a9654.822Scleropages_formosus
WBGene00004428rpl-169753.807ENSSDUG00000017181rpl13a9853.846Seriola_dumerili
WBGene00004428rpl-169753.807ENSSLDG00000002561rpl13a9653.807Seriola_lalandi_dorsalis
WBGene00004428rpl-168353.254ENSSLDG00000007920-8753.801Seriola_lalandi_dorsalis
WBGene00004428rpl-169952.475ENSSSCG00000034448-9952.475Sus_scrofa
WBGene00004428rpl-167451.316ENSSSCG00000031204-8951.316Sus_scrofa
WBGene00004428rpl-169755.330ENSTRUG00000023611rpl13a9655.330Takifugu_rubripes
WBGene00004428rpl-169852.764ENSTTRG00000005485RPL13A9852.764Tursiops_truncatus
WBGene00004428rpl-169853.535ENSUAMG00000008438RPL13A9853.535Ursus_americanus
WBGene00004428rpl-169853.535ENSUMAG00000002385RPL13A9853.535Ursus_maritimus
WBGene00004428rpl-169652.308ENSVPAG00000006564RPL13A9852.308Vicugna_pacos
WBGene00004428rpl-169853.535ENSVVUG00000022597RPL13A9853.535Vulpes_vulpes
WBGene00004428rpl-169855.051ENSXETG00000014144rpl13a8655.051Xenopus_tropicalis
WBGene00004428rpl-169755.330ENSXCOG00000004826rpl13a9655.330Xiphophorus_couchianus
WBGene00004428rpl-169755.330ENSXMAG00000027604rpl13a9655.330Xiphophorus_maculatus

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