EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00004442 (Gene tree)
Gene ID: -
Gene Symbol: rpl-28
Alias: -
Full Name: 60S ribosomal protein L28
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Minus strand
Length: 520 bases
Position: chrV:12727593-12728112
Accession: Q21930
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
R11D1	Ribosomal_L28e	PF01778.17	3.4e-25	1	1
R11D1	Ribosomal_L28e	PF01778.17	3.4e-25	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
R11D1.8.1	-	432	NM_073779	R11D1.8.1	126 (aa)	NP_506180	Q21930
R11D1.8.2	-	450	NM_073779	R11D1.8.2	126 (aa)	NP_506180	Q21930

Gene Model

Click here to download WBGene00004442's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00004442's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00004442	rpl-28	91	38.211	ENSG00000108107	RPL28	94	44.776	Homo_sapiens
WBGene00004442	rpl-28	91	40.650	ENSAPOG00000023913	rpl28	88	40.650	Acanthochromis_polyacanthus
WBGene00004442	rpl-28	91	38.211	ENSAMEG00000003764	RPL28	88	38.211	Ailuropoda_melanoleuca
WBGene00004442	rpl-28	91	40.650	ENSACIG00000014369	rpl28	88	40.650	Amphilophus_citrinellus
WBGene00004442	rpl-28	91	40.650	ENSAOCG00000019874	rpl28	83	40.650	Amphiprion_ocellaris
WBGene00004442	rpl-28	91	40.650	ENSAPEG00000020972	rpl28	88	40.650	Amphiprion_percula
WBGene00004442	rpl-28	91	41.463	ENSATEG00000013839	rpl28	88	41.463	Anabas_testudineus
WBGene00004442	rpl-28	100	36.232	ENSACAG00000015980	-	99	36.232	Anolis_carolinensis
WBGene00004442	rpl-28	91	38.211	ENSANAG00000034536	RPL28	94	44.776	Aotus_nancymaae
WBGene00004442	rpl-28	91	41.463	ENSACLG00000027917	rpl28	86	41.463	Astatotilapia_calliptera
WBGene00004442	rpl-28	91	39.024	ENSAMXG00000042541	rpl28	88	39.024	Astyanax_mexicanus
WBGene00004442	rpl-28	88	37.815	ENSBTAG00000023343	RPL28	58	38.211	Bos_taurus
WBGene00004442	rpl-28	91	38.211	ENSCJAG00000000869	RPL28	94	43.243	Callithrix_jacchus
WBGene00004442	rpl-28	91	38.211	ENSCAFG00000002585	RPL28	88	38.211	Canis_familiaris
WBGene00004442	rpl-28	91	37.398	ENSCAFG00020024049	-	88	37.398	Canis_lupus_dingo
WBGene00004442	rpl-28	91	38.211	ENSCAFG00020015496	-	88	38.211	Canis_lupus_dingo
WBGene00004442	rpl-28	54	38.235	ENSCAFG00020007821	-	52	38.235	Canis_lupus_dingo
WBGene00004442	rpl-28	91	38.211	ENSCHIG00000025540	-	88	38.211	Capra_hircus
WBGene00004442	rpl-28	91	38.211	ENSTSYG00000033853	RPL28	88	38.211	Carlito_syrichta
WBGene00004442	rpl-28	91	38.211	ENSCAPG00000007161	-	88	38.211	Cavia_aperea
WBGene00004442	rpl-28	91	38.211	ENSCPOG00000012833	-	88	38.211	Cavia_porcellus
WBGene00004442	rpl-28	91	39.024	ENSCPOG00000023112	-	88	39.024	Cavia_porcellus
WBGene00004442	rpl-28	91	36.585	ENSCCAG00000018730	-	88	36.585	Cebus_capucinus
WBGene00004442	rpl-28	91	38.211	ENSCCAG00000025765	RPL28	94	44.776	Cebus_capucinus
WBGene00004442	rpl-28	91	38.211	ENSCATG00000031417	RPL28	94	44.776	Cercocebus_atys
WBGene00004442	rpl-28	91	38.211	ENSCLAG00000000684	RPL28	88	38.211	Chinchilla_lanigera
WBGene00004442	rpl-28	91	38.211	ENSCSAG00000001738	-	88	38.211	Chlorocebus_sabaeus
WBGene00004442	rpl-28	91	39.837	ENSCSAG00000018419	-	89	39.837	Chlorocebus_sabaeus
WBGene00004442	rpl-28	91	35.772	ENSCSAVG00000008832	-	98	35.772	Ciona_savignyi
WBGene00004442	rpl-28	91	36.585	ENSCANG00000002437	-	88	36.585	Colobus_angolensis_palliatus
WBGene00004442	rpl-28	91	38.211	ENSCANG00000021622	-	88	38.211	Colobus_angolensis_palliatus
WBGene00004442	rpl-28	91	37.398	ENSCANG00000038322	RPL28	94	44.776	Colobus_angolensis_palliatus
WBGene00004442	rpl-28	91	38.211	ENSCGRG00001023644	Rpl28	88	38.211	Cricetulus_griseus_chok1gshd
WBGene00004442	rpl-28	68	36.170	ENSCGRG00000004471	Rpl28	85	36.170	Cricetulus_griseus_crigri
WBGene00004442	rpl-28	91	40.650	ENSCSEG00000001312	rpl28	88	40.650	Cynoglossus_semilaevis
WBGene00004442	rpl-28	91	39.837	ENSCVAG00000022473	rpl28	88	39.837	Cyprinodon_variegatus
WBGene00004442	rpl-28	90	36.885	ENSDARG00000005791	rpl28	87	36.885	Danio_rerio
WBGene00004442	rpl-28	91	38.211	ENSDNOG00000044172	-	88	38.211	Dasypus_novemcinctus
WBGene00004442	rpl-28	91	37.398	ENSDORG00000012809	Rpl28	88	37.398	Dipodomys_ordii
WBGene00004442	rpl-28	90	39.344	FBgn0035422	RpL28	85	39.344	Drosophila_melanogaster
WBGene00004442	rpl-28	91	38.211	ENSEASG00005020779	RPL28	88	38.211	Equus_asinus_asinus
WBGene00004442	rpl-28	91	38.211	ENSECAG00000026938	-	60	38.211	Equus_caballus
WBGene00004442	rpl-28	91	38.211	ENSELUG00000001730	rpl28	88	38.211	Esox_lucius
WBGene00004442	rpl-28	91	38.211	ENSFCAG00000005639	-	88	38.211	Felis_catus
WBGene00004442	rpl-28	91	38.211	ENSFDAG00000021448	RPL28	88	38.211	Fukomys_damarensis
WBGene00004442	rpl-28	91	39.837	ENSFHEG00000007732	rpl28	72	39.837	Fundulus_heteroclitus
WBGene00004442	rpl-28	91	38.211	ENSGMOG00000015325	rpl28	88	38.211	Gadus_morhua
WBGene00004442	rpl-28	91	41.463	ENSGAFG00000012973	rpl28	88	41.463	Gambusia_affinis
WBGene00004442	rpl-28	91	40.650	ENSGACG00000016089	rpl28	88	40.650	Gasterosteus_aculeatus
WBGene00004442	rpl-28	91	38.211	ENSGAGG00000016908	RPL28	88	38.211	Gopherus_agassizii
WBGene00004442	rpl-28	91	38.211	ENSGGOG00000022653	-	94	44.776	Gorilla_gorilla
WBGene00004442	rpl-28	91	41.463	ENSHBUG00000007390	rpl28	86	41.463	Haplochromis_burtoni
WBGene00004442	rpl-28	91	37.398	ENSHGLG00000009865	RPL28	88	37.398	Heterocephalus_glaber_female
WBGene00004442	rpl-28	91	37.398	ENSHGLG00100005407	RPL28	88	37.398	Heterocephalus_glaber_male
WBGene00004442	rpl-28	91	39.837	ENSHCOG00000003134	rpl28	88	39.837	Hippocampus_comes
WBGene00004442	rpl-28	91	41.463	ENSIPUG00000004935	rpl28	88	41.463	Ictalurus_punctatus
WBGene00004442	rpl-28	91	38.211	ENSSTOG00000008006	RPL28	88	38.211	Ictidomys_tridecemlineatus
WBGene00004442	rpl-28	91	38.211	ENSJJAG00000019841	Rpl28	88	38.211	Jaculus_jaculus
WBGene00004442	rpl-28	91	41.463	ENSKMAG00000011412	rpl28	88	41.463	Kryptolebias_marmoratus
WBGene00004442	rpl-28	91	42.276	ENSLBEG00000027857	rpl28	88	42.276	Labrus_bergylta
WBGene00004442	rpl-28	91	37.398	ENSLOCG00000003073	rpl28	82	37.398	Lepisosteus_oculatus
WBGene00004442	rpl-28	91	38.211	ENSLAFG00000022257	RPL28	88	38.211	Loxodonta_africana
WBGene00004442	rpl-28	91	38.211	ENSMFAG00000043131	RPL28	94	44.776	Macaca_fascicularis
WBGene00004442	rpl-28	91	38.211	ENSMMUG00000015901	RPL28	94	44.776	Macaca_mulatta
WBGene00004442	rpl-28	91	38.211	ENSMNEG00000032714	RPL28	94	44.776	Macaca_nemestrina
WBGene00004442	rpl-28	91	38.211	ENSMLEG00000039619	RPL28	94	44.776	Mandrillus_leucophaeus
WBGene00004442	rpl-28	91	40.650	ENSMAMG00000017519	rpl28	88	40.650	Mastacembelus_armatus
WBGene00004442	rpl-28	91	41.463	ENSMZEG00005002151	rpl28	86	41.463	Maylandia_zebra
WBGene00004442	rpl-28	91	38.211	ENSMAUG00000021147	-	88	38.211	Mesocricetus_auratus
WBGene00004442	rpl-28	91	38.211	ENSMAUG00000000783	-	88	38.211	Mesocricetus_auratus
WBGene00004442	rpl-28	91	36.975	ENSMAUG00000004738	-	87	36.975	Mesocricetus_auratus
WBGene00004442	rpl-28	91	38.211	ENSMICG00000000996	RPL28	84	43.662	Microcebus_murinus
WBGene00004442	rpl-28	91	35.484	ENSMOCG00000006881	-	88	35.484	Microtus_ochrogaster
WBGene00004442	rpl-28	91	37.398	ENSMOCG00000008075	-	88	37.398	Microtus_ochrogaster
WBGene00004442	rpl-28	91	38.211	ENSMOCG00000006245	-	88	38.211	Microtus_ochrogaster
WBGene00004442	rpl-28	91	39.837	ENSMMOG00000004489	rpl28	88	39.837	Mola_mola
WBGene00004442	rpl-28	91	39.024	ENSMODG00000000275	RPL28	88	39.024	Monodelphis_domestica
WBGene00004442	rpl-28	91	39.024	ENSMALG00000004571	rpl28	88	39.024	Monopterus_albus
WBGene00004442	rpl-28	91	38.211	MGP_CAROLIEiJ_G0029130	Rpl28	88	38.211	Mus_caroli
WBGene00004442	rpl-28	91	38.211	ENSMUSG00000030432	Rpl28	88	38.211	Mus_musculus
WBGene00004442	rpl-28	91	38.211	MGP_PahariEiJ_G0020999	Rpl28	88	38.211	Mus_pahari
WBGene00004442	rpl-28	91	38.211	MGP_SPRETEiJ_G0030183	Rpl28	88	38.211	Mus_spretus
WBGene00004442	rpl-28	91	39.024	ENSMPUG00000007450	RPL28	88	39.024	Mustela_putorius_furo
WBGene00004442	rpl-28	91	35.772	ENSMLUG00000023198	-	88	35.772	Myotis_lucifugus
WBGene00004442	rpl-28	91	36.585	ENSMLUG00000023789	-	88	36.585	Myotis_lucifugus
WBGene00004442	rpl-28	91	38.211	ENSNGAG00000016459	Rpl28	74	38.211	Nannospalax_galili
WBGene00004442	rpl-28	91	41.463	ENSNBRG00000006729	rpl28	74	41.463	Neolamprologus_brichardi
WBGene00004442	rpl-28	91	38.211	ENSNLEG00000010503	-	94	44.776	Nomascus_leucogenys
WBGene00004442	rpl-28	91	38.211	ENSOPRG00000000463	-	88	38.211	Ochotona_princeps
WBGene00004442	rpl-28	91	37.398	ENSODEG00000019864	-	88	37.398	Octodon_degus
WBGene00004442	rpl-28	100	37.681	ENSODEG00000020377	-	99	37.681	Octodon_degus
WBGene00004442	rpl-28	91	37.398	ENSODEG00000019117	-	88	37.398	Octodon_degus
WBGene00004442	rpl-28	91	38.211	ENSODEG00000010391	-	88	38.211	Octodon_degus
WBGene00004442	rpl-28	91	41.463	ENSONIG00000007486	rpl28	88	41.463	Oreochromis_niloticus
WBGene00004442	rpl-28	91	38.211	ENSOCUG00000027112	-	88	38.211	Oryctolagus_cuniculus
WBGene00004442	rpl-28	91	35.200	ENSOCUG00000027875	-	88	35.200	Oryctolagus_cuniculus
WBGene00004442	rpl-28	91	39.837	ENSORLG00000005108	rpl28	88	39.837	Oryzias_latipes
WBGene00004442	rpl-28	91	39.837	ENSORLG00020007182	rpl28	88	39.837	Oryzias_latipes_hni
WBGene00004442	rpl-28	91	39.837	ENSORLG00015013944	rpl28	88	39.837	Oryzias_latipes_hsok
WBGene00004442	rpl-28	91	39.837	ENSOMEG00000009716	rpl28	88	39.837	Oryzias_melastigma
WBGene00004442	rpl-28	91	38.211	ENSOGAG00000025533	RPL28	88	38.211	Otolemur_garnettii
WBGene00004442	rpl-28	91	38.211	ENSOARG00000001428	RPL28	88	38.211	Ovis_aries
WBGene00004442	rpl-28	91	38.211	ENSPPAG00000038000	-	94	44.776	Pan_paniscus
WBGene00004442	rpl-28	91	33.333	ENSPPRG00000012498	-	88	33.333	Panthera_pardus
WBGene00004442	rpl-28	91	38.211	ENSPPRG00000012962	-	88	38.211	Panthera_pardus
WBGene00004442	rpl-28	91	38.211	ENSPTIG00000011191	-	88	38.211	Panthera_tigris_altaica
WBGene00004442	rpl-28	91	38.211	ENSPTRG00000011505	RPL28	88	38.211	Pan_troglodytes
WBGene00004442	rpl-28	91	38.211	ENSPANG00000029716	RPL28	94	44.776	Papio_anubis
WBGene00004442	rpl-28	91	37.398	ENSPKIG00000014698	rpl28	88	37.398	Paramormyrops_kingsleyae
WBGene00004442	rpl-28	91	39.024	ENSPMGG00000004586	rpl28	88	39.024	Periophthalmus_magnuspinnatus
WBGene00004442	rpl-28	91	38.211	ENSPEMG00000011755	Rpl28	88	38.211	Peromyscus_maniculatus_bairdii
WBGene00004442	rpl-28	91	37.398	ENSPEMG00000013352	-	88	37.398	Peromyscus_maniculatus_bairdii
WBGene00004442	rpl-28	97	38.636	ENSPMAG00000008617	rpl28	93	38.636	Petromyzon_marinus
WBGene00004442	rpl-28	87	34.746	ENSPCIG00000018601	-	88	34.746	Phascolarctos_cinereus
WBGene00004442	rpl-28	91	40.650	ENSPFOG00000002206	rpl28	88	40.650	Poecilia_formosa
WBGene00004442	rpl-28	91	40.650	ENSPLAG00000003206	rpl28	88	40.650	Poecilia_latipinna
WBGene00004442	rpl-28	91	40.650	ENSPMEG00000000595	rpl28	88	40.650	Poecilia_mexicana
WBGene00004442	rpl-28	91	40.650	ENSPREG00000002015	rpl28	88	40.650	Poecilia_reticulata
WBGene00004442	rpl-28	91	38.211	ENSPPYG00000010417	-	88	38.211	Pongo_abelii
WBGene00004442	rpl-28	100	33.088	ENSPCOG00000025957	-	99	33.088	Propithecus_coquereli
WBGene00004442	rpl-28	91	38.211	ENSPCOG00000017000	RPL28	94	44.776	Propithecus_coquereli
WBGene00004442	rpl-28	91	38.211	ENSPCOG00000007456	-	88	38.211	Propithecus_coquereli
WBGene00004442	rpl-28	96	35.659	ENSPCOG00000014236	-	93	36.000	Propithecus_coquereli
WBGene00004442	rpl-28	91	36.885	ENSPVAG00000007315	RPL28	88	36.885	Pteropus_vampyrus
WBGene00004442	rpl-28	91	41.463	ENSPNYG00000004757	rpl28	88	41.463	Pundamilia_nyererei
WBGene00004442	rpl-28	91	39.837	ENSPNAG00000003547	rpl28	82	39.837	Pygocentrus_nattereri
WBGene00004442	rpl-28	91	38.211	ENSRNOG00000061441	AABR07071935.1	88	38.211	Rattus_norvegicus
WBGene00004442	rpl-28	91	39.837	ENSRNOG00000037673	AABR07071891.2	88	39.837	Rattus_norvegicus
WBGene00004442	rpl-28	91	38.211	ENSRNOG00000017127	Rpl28	88	38.211	Rattus_norvegicus
WBGene00004442	rpl-28	91	37.692	ENSRNOG00000009240	AABR07016623.1	89	37.692	Rattus_norvegicus
WBGene00004442	rpl-28	91	38.211	ENSRBIG00000034637	RPL28	94	44.776	Rhinopithecus_bieti
WBGene00004442	rpl-28	91	38.211	ENSRBIG00000003677	-	88	38.211	Rhinopithecus_bieti
WBGene00004442	rpl-28	91	38.211	ENSRROG00000028904	RPL28	94	44.776	Rhinopithecus_roxellana
WBGene00004442	rpl-28	63	39.024	ENSSBOG00000022635	-	89	39.024	Saimiri_boliviensis_boliviensis
WBGene00004442	rpl-28	91	38.211	ENSSBOG00000028286	RPL28	94	44.776	Saimiri_boliviensis_boliviensis
WBGene00004442	rpl-28	91	38.211	ENSSFOG00015001292	rpl28	88	38.211	Scleropages_formosus
WBGene00004442	rpl-28	91	37.398	ENSSFOG00015012801	-	88	37.398	Scleropages_formosus
WBGene00004442	rpl-28	91	41.463	ENSSMAG00000008756	rpl28	88	41.463	Scophthalmus_maximus
WBGene00004442	rpl-28	91	40.650	ENSSDUG00000015127	rpl28	88	40.650	Seriola_dumerili
WBGene00004442	rpl-28	63	41.975	ENSSLDG00000006440	-	83	41.975	Seriola_lalandi_dorsalis
WBGene00004442	rpl-28	91	40.650	ENSSLDG00000000414	rpl28	88	40.650	Seriola_lalandi_dorsalis
WBGene00004442	rpl-28	100	39.706	ENSSPUG00000010390	RPL28	99	39.706	Sphenodon_punctatus
WBGene00004442	rpl-28	91	41.463	ENSSPAG00000015122	rpl28	63	41.463	Stegastes_partitus
WBGene00004442	rpl-28	91	38.211	ENSSSCG00000039460	-	88	38.211	Sus_scrofa
WBGene00004442	rpl-28	67	38.636	ENSSSCG00000038865	-	78	38.636	Sus_scrofa
WBGene00004442	rpl-28	91	40.650	ENSTRUG00000025383	rpl28	88	40.650	Takifugu_rubripes
WBGene00004442	rpl-28	91	40.650	ENSTNIG00000002577	rpl28	90	41.975	Tetraodon_nigroviridis
WBGene00004442	rpl-28	91	38.211	ENSTTRG00000002428	RPL28	88	38.211	Tursiops_truncatus
WBGene00004442	rpl-28	91	38.211	ENSUAMG00000017635	RPL28	88	38.211	Ursus_americanus
WBGene00004442	rpl-28	75	34.951	ENSUMAG00000024630	-	81	34.951	Ursus_maritimus
WBGene00004442	rpl-28	91	40.800	ENSXETG00000000132	rpl28	88	40.800	Xenopus_tropicalis
WBGene00004442	rpl-28	91	39.837	ENSXCOG00000001554	rpl28	88	39.837	Xiphophorus_couchianus
WBGene00004442	rpl-28	91	39.837	ENSXMAG00000005190	rpl28	88	39.837	Xiphophorus_maculatus