EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00004454 (Gene tree)
Gene ID: -
Gene Symbol: rpl-36.A
Alias: -
Full Name: Ribosomal protein rpl-41
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Minus strand
Length: 663 bases
Position: chrII:11096542-11097204
Accession: P48166
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
C09H10	Ribosomal_L44	PF00935.19	5.3e-36	1	1
C09H10	Ribosomal_L44	PF00935.19	5.3e-36	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
C09H10.2.1	-	369	NM_063974	C09H10.2.1	105 (aa)	NP_496375	P48166
C09H10.2.2	-	398	NM_063974	C09H10.2.2	105 (aa)	NP_496375	P48166

Gene Model

Click here to download WBGene00004454's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00004454's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00004454	rpl-36.A	100	75.701	ENSAPOG00000013433	-	100	75.701	Acanthochromis_polyacanthus
WBGene00004454	rpl-36.A	57	81.667	ENSCHOG00000010261	-	100	81.667	Choloepus_hoffmanni
WBGene00004454	rpl-36.A	100	74.528	ENSCING00000014452	-	100	74.528	Ciona_intestinalis
WBGene00004454	rpl-36.A	100	76.415	ENSCSAVG00000007282	-	100	76.415	Ciona_savignyi
WBGene00004454	rpl-36.A	100	77.570	ENSCSEG00000002856	-	100	77.570	Cynoglossus_semilaevis
WBGene00004454	rpl-36.A	100	81.905	FBgn0031980	RpL36A	100	81.905	Drosophila_melanogaster
WBGene00004454	rpl-36.A	99	78.302	ENSEBUG00000008606	-	56	78.302	Eptatretus_burgeri
WBGene00004454	rpl-36.A	100	76.636	ENSELUG00000000608	-	99	75.510	Esox_lucius
WBGene00004454	rpl-36.A	100	77.570	ENSELUG00000011650	-	74	77.570	Esox_lucius
WBGene00004454	rpl-36.A	99	62.264	ENSMODG00000025578	-	78	62.264	Monodelphis_domestica
WBGene00004454	rpl-36.A	84	77.778	ENSMALG00000005415	-	92	77.778	Monopterus_albus
WBGene00004454	rpl-36.A	57	81.667	ENSOPRG00000007961	-	100	81.667	Ochotona_princeps
WBGene00004454	rpl-36.A	75	67.089	ENSPKIG00000021146	-	80	78.689	Paramormyrops_kingsleyae
WBGene00004454	rpl-36.A	57	81.667	ENSPCAG00000003271	-	100	81.667	Procavia_capensis
WBGene00004454	rpl-36.A	100	75.472	YHR141C	RPL42B	100	75.472	Saccharomyces_cerevisiae
WBGene00004454	rpl-36.A	100	75.472	YNL162W	RPL42A	100	75.472	Saccharomyces_cerevisiae
WBGene00004454	rpl-36.A	99	62.264	ENSSHAG00000013479	-	62	62.264	Sarcophilus_harrisii
WBGene00004454	rpl-36.A	96	64.078	ENSSLDG00000003666	-	99	64.078	Seriola_lalandi_dorsalis
WBGene00004454	rpl-36.A	97	73.077	ENSTRUG00000012092	-	69	73.077	Takifugu_rubripes