EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00004456 (Gene tree)
Gene ID: -
Gene Symbol: rpl-43
Alias: rpl-37a
Full Name: 60S ribosomal protein L37a
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Plus strand
Length: 381 bases
Position: chrII:14155280-14155660
Accession: Q9U2A8
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y48B6A	Ribosomal_L37ae	PF01780.19	1.1e-39	1	1
Y48B6A	Ribosomal_L37ae	PF01780.19	1.1e-39	1	1
Y48B6A	Ribosomal_L37ae	PF01780.19	1.1e-39	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y48B6A.2.2	-	342	NM_064556	Y48B6A.2.2	91 (aa)	NP_496957	Q9U2A8
Y48B6A.2.3	-	381	NM_064556	Y48B6A.2.3	91 (aa)	NP_496957	Q9U2A8
Y48B6A.2.1	-	339	NM_064556	Y48B6A.2.1	91 (aa)	NP_496957	Q9U2A8

Gene Model

Click here to download WBGene00004456's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00004456's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00004456	rpl-43	89	57.576	ENSCAFG00020027145	-	88	57.576	Canis_lupus_dingo
WBGene00004456	rpl-43	100	62.637	ENSCING00000013022	-	100	62.637	Ciona_intestinalis
WBGene00004456	rpl-43	100	72.527	FBgn0261608	RpL37A	99	72.527	Drosophila_melanogaster
WBGene00004456	rpl-43	100	69.231	YPR043W	RPL43A	99	69.231	Saccharomyces_cerevisiae
WBGene00004456	rpl-43	100	69.231	YJR094W-A	RPL43B	99	69.231	Saccharomyces_cerevisiae