EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00004496 (Gene tree)
Gene ID: -
Gene Symbol: rps-27
Alias: -
Full Name: 40S ribosomal protein S27
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Minus strand
Length: 671 bases
Position: chrV:103394-104064
Accession: Q9TXP0
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
F56E10	Ribosomal_S27e	PF01667.17	2.7e-24	1	1
F56E10	Ribosomal_S27e	PF01667.17	2.7e-24	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
F56E10.4.1	-	351	NM_070733	F56E10.4.1	83 (aa)	NP_503134	Q9TXP0
F56E10.4.2	-	356	NM_070733	F56E10.4.2	83 (aa)	NP_503134	Q9TXP0

Gene Model

Click here to download WBGene00004496's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00004496's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00004496	rps-27	99	78.049	FBgn0039300	RpS27	98	78.049	Drosophila_melanogaster
WBGene00004496	rps-27	92	65.789	ENSFHEG00000004295	-	55	65.789	Fundulus_heteroclitus
WBGene00004496	rps-27	99	64.634	ENSGAFG00000016054	-	59	64.634	Gambusia_affinis
WBGene00004496	rps-27	94	66.667	ENSGACG00000011286	-	92	66.667	Gasterosteus_aculeatus
WBGene00004496	rps-27	98	59.259	ENSMMOG00000020318	-	98	59.259	Mola_mola
WBGene00004496	rps-27	93	66.234	ENSPFOG00000004190	-	96	66.234	Poecilia_formosa
WBGene00004496	rps-27	99	65.854	ENSPLAG00000023590	-	98	65.854	Poecilia_latipinna
WBGene00004496	rps-27	99	65.854	ENSPLAG00000013332	-	98	65.854	Poecilia_latipinna
WBGene00004496	rps-27	100	64.286	ENSPMEG00000017808	-	91	64.286	Poecilia_mexicana
WBGene00004496	rps-27	99	65.854	YHR021C	RPS27B	100	65.854	Saccharomyces_cerevisiae
WBGene00004496	rps-27	99	64.634	YKL156W	RPS27A	100	64.634	Saccharomyces_cerevisiae
WBGene00004496	rps-27	94	76.923	ENSSLDG00000003982	-	89	76.923	Seriola_lalandi_dorsalis
WBGene00004496	rps-27	99	64.634	ENSXCOG00000010263	-	98	64.634	Xiphophorus_couchianus
WBGene00004496	rps-27	92	64.474	ENSXMAG00000003387	-	88	64.474	Xiphophorus_maculatus