EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00004698 (Gene tree)
Gene ID: -
Gene Symbol: rsp-1
Alias: srp-5
Full Name: Probable splicing factor%2C arginine/serine-rich 1
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 2503 bases
Position: chrII:11453362-11455864
Accession: Q23121
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
W02B12	RRM_1	PF00076.22	6.8e-25	1	2
W02B12	RRM_1	PF00076.22	6.8e-25	2	2
W02B12	RRM_1	PF00076.22	8.7e-18	1	1
W02B12	RRM_1	PF00076.22	8.7e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
W02B12.3b.2	-	1428	-	W02B12.3b.2	148 (aa)	NP_871913	UPI000008651A
W02B12.3a	-	1171	NM_064041	W02B12.3a	312 (aa)	NP_496442	Q23121
W02B12.3b.1	-	1531	-	W02B12.3b.1	148 (aa)	NP_871913	UPI000008651A
W02B12.3d	-	2243	NR_138514	-	- (aa)	-	-
W02B12.3c	-	687	NM_001330960	W02B12.3c	170 (aa)	NP_001317731	UPI0007BD786D

Gene Model

Click here to download WBGene00004698's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00004698's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00004698	rsp-1	97	49.669	WBGene00004699	rsp-2	66	50.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00004698	rsp-1	97	48.252	ENSAPOG00000023399	-	59	48.990	Acanthochromis_polyacanthus
WBGene00004698	rsp-1	99	49.315	ENSACIG00000018649	srsf4	89	52.083	Amphilophus_citrinellus
WBGene00004698	rsp-1	98	49.655	ENSAOCG00000005997	srsf4	91	50.538	Amphiprion_ocellaris
WBGene00004698	rsp-1	50	42.331	ENSAPEG00000020826	srsf4	62	40.722	Amphiprion_percula
WBGene00004698	rsp-1	98	52.740	ENSATEG00000005680	srsf4	60	50.000	Anabas_testudineus
WBGene00004698	rsp-1	97	53.147	ENSACLG00000021269	-	50	51.010	Astatotilapia_calliptera
WBGene00004698	rsp-1	97	52.778	ENSACLG00000003395	srsf4	99	43.706	Astatotilapia_calliptera
WBGene00004698	rsp-1	97	53.103	ENSAMXG00000034811	srsf4	70	66.197	Astyanax_mexicanus
WBGene00004698	rsp-1	97	48.630	ENSCING00000011362	-	65	46.701	Ciona_intestinalis
WBGene00004698	rsp-1	97	48.993	ENSCING00000012370	-	68	46.000	Ciona_intestinalis
WBGene00004698	rsp-1	97	44.521	ENSCING00000020631	-	80	46.798	Ciona_intestinalis
WBGene00004698	rsp-1	97	46.154	ENSCING00000024718	-	56	48.990	Ciona_intestinalis
WBGene00004698	rsp-1	97	46.575	ENSCSAVG00000002581	-	69	47.000	Ciona_savignyi
WBGene00004698	rsp-1	97	56.250	ENSCSEG00000010058	srsf4	75	54.861	Cynoglossus_semilaevis
WBGene00004698	rsp-1	97	46.528	ENSDARG00000105293	srsf4	66	61.429	Danio_rerio
WBGene00004698	rsp-1	97	47.222	FBgn0004587	B52	96	45.161	Drosophila_melanogaster
WBGene00004698	rsp-1	97	40.000	ENSEBUG00000001681	srsf4	66	40.000	Eptatretus_burgeri
WBGene00004698	rsp-1	84	40.000	ENSEBUG00000003129	srsf4	70	37.500	Eptatretus_burgeri
WBGene00004698	rsp-1	97	50.000	ENSELUG00000017551	srsf4	94	52.027	Esox_lucius
WBGene00004698	rsp-1	97	50.694	ENSFHEG00000007472	srsf4	75	68.571	Fundulus_heteroclitus
WBGene00004698	rsp-1	97	53.793	ENSGAFG00000018496	srsf4	68	46.890	Gambusia_affinis
WBGene00004698	rsp-1	97	51.724	ENSGACG00000002389	srsf4	54	49.749	Gasterosteus_aculeatus
WBGene00004698	rsp-1	95	53.571	ENSHBUG00000011326	-	50	51.010	Haplochromis_burtoni
WBGene00004698	rsp-1	97	55.172	ENSHCOG00000012540	srsf4	66	49.038	Hippocampus_comes
WBGene00004698	rsp-1	97	52.703	ENSKMAG00000013631	srsf4	93	42.951	Kryptolebias_marmoratus
WBGene00004698	rsp-1	99	52.703	ENSMAMG00000004888	srsf4	70	51.389	Mastacembelus_armatus
WBGene00004698	rsp-1	97	52.778	ENSMZEG00005026275	srsf4	99	43.706	Maylandia_zebra
WBGene00004698	rsp-1	97	52.740	ENSMMOG00000013653	srsf4	61	50.500	Mola_mola
WBGene00004698	rsp-1	97	49.650	ENSMODG00000011052	SRSF4	54	48.756	Monodelphis_domestica
WBGene00004698	rsp-1	97	53.741	ENSMALG00000013392	srsf4	65	51.256	Monopterus_albus
WBGene00004698	rsp-1	53	55.128	ENSMALG00000010062	-	74	57.971	Monopterus_albus
WBGene00004698	rsp-1	97	44.755	ENSNLEG00000030787	-	98	43.607	Nomascus_leucogenys
WBGene00004698	rsp-1	97	49.306	ENSORLG00020016052	srsf4	64	51.759	Oryzias_latipes_hni
WBGene00004698	rsp-1	97	49.306	ENSORLG00015007566	srsf4	69	51.759	Oryzias_latipes_hsok
WBGene00004698	rsp-1	97	49.306	ENSOMEG00000005541	srsf4	50	51.759	Oryzias_melastigma
WBGene00004698	rsp-1	78	45.217	ENSOARG00000002451	SRSF4	62	43.318	Ovis_aries
WBGene00004698	rsp-1	99	56.849	ENSPMGG00000013436	srsf4	94	56.250	Periophthalmus_magnuspinnatus
WBGene00004698	rsp-1	97	52.083	ENSPMAG00000009397	srsf4	67	46.465	Petromyzon_marinus
WBGene00004698	rsp-1	97	53.793	ENSPLAG00000008812	srsf4	63	45.729	Poecilia_latipinna
WBGene00004698	rsp-1	97	53.741	ENSPMEG00000023638	srsf4	52	51.759	Poecilia_mexicana
WBGene00004698	rsp-1	97	52.414	ENSPREG00000009639	srsf4	62	43.673	Poecilia_reticulata
WBGene00004698	rsp-1	97	50.694	ENSPNYG00000003796	srsf4	68	46.694	Pundamilia_nyererei
WBGene00004698	rsp-1	97	51.034	ENSPNAG00000023844	srsf4	52	49.246	Pygocentrus_nattereri
WBGene00004698	rsp-1	97	49.655	ENSSFOG00015020292	srsf4	65	67.143	Scleropages_formosus
WBGene00004698	rsp-1	97	50.694	ENSSDUG00000007387	srsf4	53	50.754	Seriola_dumerili
WBGene00004698	rsp-1	97	38.194	ENSSLDG00000009745	srsf4	99	43.719	Seriola_lalandi_dorsalis
WBGene00004698	rsp-1	99	52.055	ENSSPAG00000014538	srsf4	82	53.472	Stegastes_partitus
WBGene00004698	rsp-1	97	52.027	ENSTRUG00000011891	srsf4	61	50.754	Takifugu_rubripes
WBGene00004698	rsp-1	97	52.414	ENSTNIG00000005573	srsf4	59	43.874	Tetraodon_nigroviridis
WBGene00004698	rsp-1	97	53.103	ENSXCOG00000018826	srsf4	89	50.000	Xiphophorus_couchianus
WBGene00004698	rsp-1	97	50.350	ENSXCOG00000003212	-	54	50.754	Xiphophorus_couchianus
WBGene00004698	rsp-1	54	66.667	ENSXMAG00000021549	-	59	68.571	Xiphophorus_maculatus