EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00004700 (Gene tree)
Gene ID: -
Gene Symbol: rsp-3
Alias: -
Full Name: Probable splicing factor%2C arginine/serine-rich 3
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Minus strand
Length: 1674 bases
Position: chrIII:12686243-12687916
Accession: Q9NEW6
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y111B2A	RRM_1	PF00076.22	2e-34	1	2
Y111B2A	RRM_1	PF00076.22	2e-34	2	2
Y111B2A	RRM_1	PF00076.22	2e-34	1	2
Y111B2A	RRM_1	PF00076.22	2e-34	2	2
Y111B2A	RRM_1	PF00076.22	2e-34	1	2
Y111B2A	RRM_1	PF00076.22	2e-34	2	2
Y111B2A	RRM_1	PF00076.22	2e-34	1	2
Y111B2A	RRM_1	PF00076.22	2e-34	2	2
Y111B2A	RRM_1	PF00076.22	2e-34	1	2
Y111B2A	RRM_1	PF00076.22	2e-34	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y111B2A.18.4	-	1343	-	Y111B2A.18.4	258 (aa)	-	Q9NEW6
Y111B2A.18.5	-	1269	-	Y111B2A.18.5	258 (aa)	-	Q9NEW6
Y111B2A.18.1	-	969	NM_067248	Y111B2A.18.1	258 (aa)	NP_499649	Q9NEW6
Y111B2A.18.2	-	928	NM_067248	Y111B2A.18.2	258 (aa)	NP_499649	Q9NEW6
Y111B2A.18.3	-	1103	NM_067248	Y111B2A.18.3	258 (aa)	NP_499649	Q9NEW6

Gene Model

Click here to download WBGene00004700's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00004700's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00004700	rsp-3	71	60.870	ENSACIG00000002623	-	91	62.295	Amphilophus_citrinellus
WBGene00004700	rsp-3	75	64.615	ENSACLG00000021693	-	77	59.487	Astatotilapia_calliptera
WBGene00004700	rsp-3	75	62.564	ENSACLG00000005676	-	93	55.833	Astatotilapia_calliptera
WBGene00004700	rsp-3	74	64.211	ENSCING00000007375	-	75	61.053	Ciona_intestinalis
WBGene00004700	rsp-3	55	59.859	ENSCING00000000257	-	76	57.042	Ciona_intestinalis
WBGene00004700	rsp-3	73	62.766	ENSCSAVG00000006093	-	90	59.574	Ciona_savignyi
WBGene00004700	rsp-3	55	56.028	ENSCSAVG00000003567	-	77	56.028	Ciona_savignyi
WBGene00004700	rsp-3	76	59.487	FBgn0283477	SF2	74	59.487	Drosophila_melanogaster
WBGene00004700	rsp-3	90	57.082	ENSEBUG00000009582	-	92	56.250	Eptatretus_burgeri
WBGene00004700	rsp-3	90	55.365	ENSFHEG00000017425	-	93	62.842	Fundulus_heteroclitus
WBGene00004700	rsp-3	71	60.870	ENSGMOG00000010606	-	91	62.842	Gadus_morhua
WBGene00004700	rsp-3	75	62.051	ENSGAFG00000012721	-	93	55.417	Gambusia_affinis
WBGene00004700	rsp-3	75	63.402	ENSGAFG00000000609	-	76	63.918	Gambusia_affinis
WBGene00004700	rsp-3	71	61.413	ENSGACG00000011094	-	92	61.749	Gasterosteus_aculeatus
WBGene00004700	rsp-3	75	64.103	ENSHBUG00000015576	-	77	58.974	Haplochromis_burtoni
WBGene00004700	rsp-3	75	58.586	ENSHCOG00000008016	-	74	56.345	Hippocampus_comes
WBGene00004700	rsp-3	75	60.513	ENSMFAG00000034223	-	62	61.340	Macaca_fascicularis
WBGene00004700	rsp-3	75	62.564	ENSMZEG00005007947	-	93	55.833	Maylandia_zebra
WBGene00004700	rsp-3	75	63.590	ENSMZEG00005019071	-	94	59.563	Maylandia_zebra
WBGene00004700	rsp-3	75	61.856	ENSMMOG00000018849	-	74	61.856	Mola_mola
WBGene00004700	rsp-3	75	62.564	ENSNBRG00000019981	-	93	55.833	Neolamprologus_brichardi
WBGene00004700	rsp-3	75	64.615	ENSNBRG00000008134	-	74	62.371	Neolamprologus_brichardi
WBGene00004700	rsp-3	64	47.904	ENSOPRG00000004745	-	92	46.988	Ochotona_princeps
WBGene00004700	rsp-3	75	64.615	ENSONIG00000004857	-	77	64.615	Oreochromis_niloticus
WBGene00004700	rsp-3	66	41.520	ENSOCUG00000026856	-	91	39.766	Oryctolagus_cuniculus
WBGene00004700	rsp-3	75	63.077	ENSORLG00000005314	-	72	64.433	Oryzias_latipes
WBGene00004700	rsp-3	75	63.077	ENSORLG00015015497	-	72	64.433	Oryzias_latipes_hsok
WBGene00004700	rsp-3	75	65.128	ENSOMEG00000017711	-	91	59.426	Oryzias_melastigma
WBGene00004700	rsp-3	75	61.026	ENSPLAG00000019553	-	97	54.098	Poecilia_latipinna
WBGene00004700	rsp-3	71	60.870	ENSPLAG00000019613	-	68	61.202	Poecilia_latipinna
WBGene00004700	rsp-3	75	63.402	ENSPREG00000016792	-	75	62.887	Poecilia_reticulata
WBGene00004700	rsp-3	75	64.615	ENSPNYG00000020651	-	74	62.371	Pundamilia_nyererei
WBGene00004700	rsp-3	75	62.564	ENSPNYG00000017115	-	93	55.833	Pundamilia_nyererei
WBGene00004700	rsp-3	82	62.736	ENSSFOG00015004989	-	67	64.103	Scleropages_formosus
WBGene00004700	rsp-3	75	64.500	ENSSDUG00000003887	-	94	55.285	Seriola_dumerili
WBGene00004700	rsp-3	76	60.714	ENSTRUG00000017058	-	77	60.714	Takifugu_rubripes
WBGene00004700	rsp-3	90	51.064	ENSTNIG00000009993	-	90	53.043	Tetraodon_nigroviridis
WBGene00004700	rsp-3	75	61.026	ENSXCOG00000009643	-	97	54.098	Xiphophorus_couchianus
WBGene00004700	rsp-3	75	62.887	ENSXCOG00000017888	-	78	63.021	Xiphophorus_couchianus
WBGene00004700	rsp-3	75	62.887	ENSXMAG00000010797	-	76	63.402	Xiphophorus_maculatus