EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00004701 (Gene tree)
Gene ID: -
Gene Symbol: rsp-4
Alias: srp-2
Full Name: Probable splicing factor%2C arginine/serine-rich 4
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Minus strand
Length: 1420 bases
Position: chrII:5387411-5388830
Accession: Q09511
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
EEED8	RRM_1	PF00076.22	5e-19	1	1
EEED8	RRM_1	PF00076.22	1.4e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
EEED8.7b	-	1030	-	EEED8.7b	126 (aa)	NP_495014	UPI0000079AE7
EEED8.7a	-	844	NM_062612	EEED8.7a	196 (aa)	NP_495013	Q09511

Gene Model

Click here to download WBGene00004701's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00004701's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00004701	rsp-4	61	32.468	WBGene00011059	R06C1.4	92	32.468
WBGene00004701	rsp-4	61	37.662	WBGene00011156	R09B3.3	91	37.662
WBGene00004701	rsp-4	65	34.146	WBGene00011155	R09B3.2	99	34.146
WBGene00004701	rsp-4	62	33.333	WBGene00006321	sup-12	51	33.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00004701	rsp-4	74	60.215	ENSG00000161547	SRSF2	72	60.215	Homo_sapiens
WBGene00004701	rsp-4	79	59.000	ENSACIG00000018502	srsf2a	95	44.910	Amphilophus_citrinellus
WBGene00004701	rsp-4	82	59.223	ENSCING00000004198	-	60	59.223	Ciona_intestinalis
WBGene00004701	rsp-4	82	59.223	ENSCSAVG00000009199	-	56	59.223	Ciona_savignyi
WBGene00004701	rsp-4	83	58.095	ENSDARG00000057484	srsf2a	79	61.290	Danio_rerio
WBGene00004701	rsp-4	70	62.500	FBgn0265298	SC35	54	60.377	Drosophila_melanogaster
WBGene00004701	rsp-4	74	60.215	ENSGGOG00000014378	SRSF2	82	47.929	Gorilla_gorilla
WBGene00004701	rsp-4	60	40.000	ENSHGLG00100012221	-	80	36.667	Heterocephalus_glaber_male
WBGene00004701	rsp-4	68	62.791	ENSHCOG00000008598	-	67	62.791	Hippocampus_comes
WBGene00004701	rsp-4	74	60.215	ENSLBEG00000022770	srsf2b	55	50.758	Labrus_bergylta
WBGene00004701	rsp-4	74	60.215	ENSOANG00000002695	-	78	60.215	Ornithorhynchus_anatinus
WBGene00004701	rsp-4	74	61.290	ENSPMGG00000006860	-	56	61.290	Periophthalmus_magnuspinnatus
WBGene00004701	rsp-4	74	60.215	ENSPVAG00000014264	-	78	60.215	Pteropus_vampyrus
WBGene00004701	rsp-4	80	58.416	ENSSFOG00015000588	srsf2a	58	48.227	Scleropages_formosus